(38 nodes) SNF2-like, N-terminal domain superfamily network (Aquilegia coerulea)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A2G5CKM2	Helicase ATP-binding domain-containing protein. (150 aa)
	A0A2G5C1A5	Uncharacterized protein. (1428 aa)
	A0A2G5C4J3	Uncharacterized protein. (1523 aa)
	A0A2G5CBZ5	Uncharacterized protein. (976 aa)
	A0A2G5CC06	Uncharacterized protein. (1121 aa)
	A0A2G5CGZ0	Uncharacterized protein. (1084 aa)
	A0A2G5CHN5	Uncharacterized protein. (1114 aa)
	A0A2G5CJT3	Uncharacterized protein. (706 aa)
	A0A2G5CKL6	Uncharacterized protein. (2051 aa)
	A0A2G5CTL1	Uncharacterized protein. (877 aa)
	A0A2G5CVL9	Uncharacterized protein. (906 aa)
	A0A2G5CVV7	Uncharacterized protein. (830 aa)
	A0A2G5CXA1	Uncharacterized protein. (699 aa)
	A0A2G5CYK1	Uncharacterized protein. (1225 aa)
	A0A2G5CYY5	Uncharacterized protein. (1358 aa)
	A0A2G5D1D1	Uncharacterized protein. (2370 aa)
	A0A2G5D2F0	Uncharacterized protein. (2375 aa)
	A0A2G5D4U7	Uncharacterized protein. (1652 aa)
	A0A2G5D7J6	Uncharacterized protein. (1225 aa)
	A0A2G5D919	Uncharacterized protein. (1536 aa)
	A0A2G5DM27	Uncharacterized protein. (1081 aa)
	A0A2G5DM80	Uncharacterized protein. (3382 aa)
	A0A2G5DVM7	Uncharacterized protein. (1316 aa)
	A0A2G5DXD2	Uncharacterized protein. (1349 aa)
	A0A2G5DXH7	Uncharacterized protein. (1709 aa)
	A0A2G5E098	Uncharacterized protein. (2105 aa)
	A0A2G5E0L5	Uncharacterized protein. (2272 aa)
	A0A2G5E207	Uncharacterized protein. (766 aa)
	A0A2G5EGA2	Uncharacterized protein. (1063 aa)
	A0A2G5EJ10	Uncharacterized protein. (767 aa)
	A0A2G5EJE9	Uncharacterized protein. (1026 aa)
	A0A2G5EJG3	Uncharacterized protein. (1059 aa)
	A0A2G5EKZ5	Uncharacterized protein. (925 aa)
	A0A2G5EW31	Uncharacterized protein. (868 aa)
	A0A2G5EYE5	Uncharacterized protein. (574 aa)
	A0A2G5EYX2	Uncharacterized protein. (1404 aa)
	A0A2G5F0S7	Uncharacterized protein. (1070 aa)
	A0A2G5F7R1	Uncharacterized protein. (757 aa)

Your Current Organism:

Aquilegia coerulea

NCBI taxonomy Id: 218851
Other names: A. coerulea, Aquilegia caerulea, Rocky Mountain columbine

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A2G5C1A5	A0A2G5CJT3	Uncharacterized protein.	Uncharacterized protein.	0.545
A0A2G5C1A5	A0A2G5CKM2	Uncharacterized protein.	Helicase ATP-binding domain-containing protein.	0.635
A0A2G5C1A5	A0A2G5CTL1	Uncharacterized protein.	Uncharacterized protein.	0.414
A0A2G5C1A5	A0A2G5CXA1	Uncharacterized protein.	Uncharacterized protein.	0.546
A0A2G5C1A5	A0A2G5D1D1	Uncharacterized protein.	Uncharacterized protein.	0.492
A0A2G5C1A5	A0A2G5DM27	Uncharacterized protein.	Uncharacterized protein.	0.415
A0A2G5C1A5	A0A2G5DM80	Uncharacterized protein.	Uncharacterized protein.	0.841
A0A2G5C1A5	A0A2G5E098	Uncharacterized protein.	Uncharacterized protein.	0.418
A0A2G5C1A5	A0A2G5E0L5	Uncharacterized protein.	Uncharacterized protein.	0.524
A0A2G5C1A5	A0A2G5E207	Uncharacterized protein.	Uncharacterized protein.	0.546
A0A2G5C1A5	A0A2G5EJ10	Uncharacterized protein.	Uncharacterized protein.	0.412
A0A2G5C1A5	A0A2G5EJE9	Uncharacterized protein.	Uncharacterized protein.	0.546
A0A2G5C1A5	A0A2G5EJG3	Uncharacterized protein.	Uncharacterized protein.	0.545
A0A2G5C1A5	A0A2G5EKZ5	Uncharacterized protein.	Uncharacterized protein.	0.546
A0A2G5C1A5	A0A2G5F0S7	Uncharacterized protein.	Uncharacterized protein.	0.415
A0A2G5C4J3	A0A2G5DM80	Uncharacterized protein.	Uncharacterized protein.	0.842
A0A2G5C4J3	A0A2G5E098	Uncharacterized protein.	Uncharacterized protein.	0.479
A0A2G5CBZ5	A0A2G5CKM2	Uncharacterized protein.	Helicase ATP-binding domain-containing protein.	0.597
A0A2G5CBZ5	A0A2G5CVL9	Uncharacterized protein.	Uncharacterized protein.	0.753
A0A2G5CBZ5	A0A2G5CYK1	Uncharacterized protein.	Uncharacterized protein.	0.751