(64 nodes) RNA Polymerase I Transcription network (Aquilegia coerulea)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A2G5EP16	Uncharacterized protein. (244 aa)
	A0A2G5EP72	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (132 aa)
	A0A2G5ET36	C2H2-type domain-containing protein. (418 aa)
	A0A2G5ETP1	Uncharacterized protein. (205 aa)
	A0A2G5EUL4	BSD domain-containing protein. (597 aa)
	A0A2G5EV44	Uncharacterized protein. (239 aa)
	A0A2G5EVC2	Uncharacterized protein. (560 aa)
	A0A2G5EWI3	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1181 aa)
	A0A2G5F021	Uncharacterized protein. (340 aa)
	A0A2G5F0M4	Uncharacterized protein. (206 aa)
	A0A2G5F1P4	Uncharacterized protein. (71 aa)
	A0A2G5F6Q0	Histone H2B; Belongs to the histone H2B family. (150 aa)
	A0A2G5FAW7	MAT1 domain-containing protein. (196 aa)
	A0A2G5FCG1	Uncharacterized protein. (175 aa)
	A0A2G5DDK7	Histone H2B; Belongs to the histone H2B family. (143 aa)
	A0A2G5DA71	Uncharacterized protein. (605 aa)
	A0A2G5DA23	Uncharacterized protein. (647 aa)
	A0A2G5D7R1	Uncharacterized protein. (642 aa)
	A0A2G5D698	SANTA domain-containing protein. (345 aa)
	A0A2G5D5B1	Histone H2B; Belongs to the histone H2B family. (146 aa)
	A0A2G5CZG0	Uncharacterized protein. (191 aa)
	A0A2G5CZD9	Uncharacterized protein. (191 aa)
	A0A2G5CUK2	Uncharacterized protein. (200 aa)
	A0A2G5CRU6	Uncharacterized protein. (617 aa)
	A0A2G5CR54	Uncharacterized protein. (239 aa)
	A0A2G5CPM1	MAT1 domain-containing protein. (196 aa)
	A0A2G5CMA1	Histone H2B; Belongs to the histone H2B family. (153 aa)
	A0A2G5CM59	Histone H2B; Belongs to the histone H2B family. (153 aa)
	A0A2G5EGQ9	Histone H2B; Belongs to the histone H2B family. (143 aa)
	A0A2G5CLD6	Histone H2B; Belongs to the histone H2B family. (150 aa)
	A0A2G5CEK7	Histone domain-containing protein; Belongs to the histone H2B family. (141 aa)
	A0A2G5C2A9	Uncharacterized protein. (763 aa)
	A0A2G5C1K4	Uncharacterized protein. (190 aa)
	A0A2G5C0I8	Uncharacterized protein. (133 aa)
	A0A2G5CLG1	Uncharacterized protein. (408 aa)
	A0A2G5EF30	Uncharacterized protein. (775 aa)
	A0A2G5EC92	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1774 aa)
	A0A2G5EAW2	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (132 aa)
	A0A2G5E423	Uncharacterized protein. (200 aa)
	A0A2G5E3U8	WAT1-related protein. (352 aa)
	A0A2G5E2N0	Uncharacterized protein. (48 aa)
	A0A2G5E2G4	Uncharacterized protein. (210 aa)
	A0A2G5E1G5	Uncharacterized protein. (144 aa)
	A0A2G5E0K2	Uncharacterized protein. (302 aa)
	A0A2G5DXR2	Histone H2B; Belongs to the histone H2B family. (144 aa)
	A0A2G5DXD1	Uncharacterized protein. (228 aa)
	A0A2G5DUN3	Histone H2B; Belongs to the histone H2B family. (153 aa)
	A0A2G5DTF9	Uncharacterized protein. (168 aa)
	A0A2G5DT06	Uncharacterized protein. (303 aa)
	A0A2G5DST5	Uncharacterized protein. (641 aa)
	A0A2G5DRC1	Uncharacterized protein. (433 aa)
	A0A2G5DP22	Uncharacterized protein. (51 aa)
	A0A2G5DNV2	General transcription factor IIH subunit. (427 aa)
	A0A2G5DMW4	Helicase ATP-binding domain-containing protein. (793 aa)
	A0A2G5DML3	Uncharacterized protein; Belongs to the eukaryotic RPB8 RNA polymerase subunit family. (146 aa)
	A0A2G5DM18	CYCLIN domain-containing protein; Belongs to the cyclin family. (334 aa)
	A0A2G5DKJ0	RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. (452 aa)
	A0A2G5DJQ1	Histone H2B; Belongs to the histone H2B family. (148 aa)
	A0A2G5DJI8	Uncharacterized protein. (205 aa)
	A0A2G5DEI9	RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. (428 aa)
	A0A2G5DEI2	RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. (324 aa)
	A0A2G5EGT7	Histone domain-containing protein; Belongs to the histone H2B family. (220 aa)
	A0A2G5EIB3	Uncharacterized protein. (191 aa)
	A0A2G5EKH0	RPOLD domain-containing protein. (391 aa)

Your Current Organism:

Aquilegia coerulea

NCBI taxonomy Id: 218851
Other names: A. coerulea, Aquilegia caerulea, Rocky Mountain columbine

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A2G5C0I8	A0A2G5C1K4	Uncharacterized protein.	Uncharacterized protein.	0.855
A0A2G5C0I8	A0A2G5C2A9	Uncharacterized protein.	Uncharacterized protein.	0.954
A0A2G5C0I8	A0A2G5CPM1	Uncharacterized protein.	MAT1 domain-containing protein.	0.958
A0A2G5C0I8	A0A2G5CR54	Uncharacterized protein.	Uncharacterized protein.	0.907
A0A2G5C0I8	A0A2G5CUK2	Uncharacterized protein.	Uncharacterized protein.	0.855
A0A2G5C0I8	A0A2G5CZD9	Uncharacterized protein.	Uncharacterized protein.	0.855
A0A2G5C0I8	A0A2G5CZG0	Uncharacterized protein.	Uncharacterized protein.	0.855
A0A2G5C0I8	A0A2G5D698	Uncharacterized protein.	SANTA domain-containing protein.	0.907
A0A2G5C0I8	A0A2G5DA71	Uncharacterized protein.	Uncharacterized protein.	0.960
A0A2G5C0I8	A0A2G5DEI2	Uncharacterized protein.	RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family.	0.961
A0A2G5C0I8	A0A2G5DEI9	Uncharacterized protein.	RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family.	0.961
A0A2G5C0I8	A0A2G5DJI8	Uncharacterized protein.	Uncharacterized protein.	0.887
A0A2G5C0I8	A0A2G5DKJ0	Uncharacterized protein.	RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family.	0.961
A0A2G5C0I8	A0A2G5DM18	Uncharacterized protein.	CYCLIN domain-containing protein; Belongs to the cyclin family.	0.981
A0A2G5C0I8	A0A2G5DML3	Uncharacterized protein.	Uncharacterized protein; Belongs to the eukaryotic RPB8 RNA polymerase subunit family.	0.958
A0A2G5C0I8	A0A2G5DMW4	Uncharacterized protein.	Helicase ATP-binding domain-containing protein.	0.981
A0A2G5C0I8	A0A2G5DNV2	Uncharacterized protein.	General transcription factor IIH subunit.	0.975
A0A2G5C0I8	A0A2G5DP22	Uncharacterized protein.	Uncharacterized protein.	0.907
A0A2G5C0I8	A0A2G5DRC1	Uncharacterized protein.	Uncharacterized protein.	0.960
A0A2G5C0I8	A0A2G5DTF9	Uncharacterized protein.	Uncharacterized protein.	0.931