(9 nodes) tRNA synthetases class I (I, L, M and V) network (Aquilegia coerulea)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A2G5CC75	Uncharacterized protein; Belongs to the class-I aminoacyl-tRNA synthetase family. (808 aa)
	A0A2G5F0I1	Uncharacterized protein; Belongs to the class-I aminoacyl-tRNA synthetase family. (1087 aa)
	A0A2G5EY96	tRNA-synt_1 domain-containing protein. (484 aa)
	A0A2G5DKL9	tRNA-synt_1e domain-containing protein. (589 aa)
	A0A2G5D688	Uncharacterized protein; Belongs to the class-I aminoacyl-tRNA synthetase family. (615 aa)
	A0A2G5F8Z8	Uncharacterized protein; Belongs to the class-I aminoacyl-tRNA synthetase family. (1191 aa)
	A0A2G5D0N9	tRNA-synt_1 domain-containing protein. (210 aa)
	A0A2G5CC93	Uncharacterized protein; Belongs to the class-I aminoacyl-tRNA synthetase family. (572 aa)
	A0A2G5C3X3	DALR_2 domain-containing protein. (290 aa)

Your Current Organism:

Aquilegia coerulea

NCBI taxonomy Id: 218851
Other names: A. coerulea, Aquilegia caerulea, Rocky Mountain columbine

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A2G5C3X3	A0A2G5CC75	DALR_2 domain-containing protein.	Uncharacterized protein; Belongs to the class-I aminoacyl-tRNA synthetase family.	0.566
A0A2G5C3X3	A0A2G5D0N9	DALR_2 domain-containing protein.	tRNA-synt_1 domain-containing protein.	0.566
A0A2G5C3X3	A0A2G5F0I1	DALR_2 domain-containing protein.	Uncharacterized protein; Belongs to the class-I aminoacyl-tRNA synthetase family.	0.754
A0A2G5C3X3	A0A2G5F8Z8	DALR_2 domain-containing protein.	Uncharacterized protein; Belongs to the class-I aminoacyl-tRNA synthetase family.	0.472
A0A2G5CC75	A0A2G5C3X3	Uncharacterized protein; Belongs to the class-I aminoacyl-tRNA synthetase family.	DALR_2 domain-containing protein.	0.566
A0A2G5CC75	A0A2G5CC93	Uncharacterized protein; Belongs to the class-I aminoacyl-tRNA synthetase family.	Uncharacterized protein; Belongs to the class-I aminoacyl-tRNA synthetase family.	0.794
A0A2G5CC75	A0A2G5D688	Uncharacterized protein; Belongs to the class-I aminoacyl-tRNA synthetase family.	Uncharacterized protein; Belongs to the class-I aminoacyl-tRNA synthetase family.	0.794
A0A2G5CC75	A0A2G5DKL9	Uncharacterized protein; Belongs to the class-I aminoacyl-tRNA synthetase family.	tRNA-synt_1e domain-containing protein.	0.566
A0A2G5CC75	A0A2G5EY96	Uncharacterized protein; Belongs to the class-I aminoacyl-tRNA synthetase family.	tRNA-synt_1 domain-containing protein.	0.846
A0A2G5CC75	A0A2G5F0I1	Uncharacterized protein; Belongs to the class-I aminoacyl-tRNA synthetase family.	Uncharacterized protein; Belongs to the class-I aminoacyl-tRNA synthetase family.	0.826
A0A2G5CC75	A0A2G5F8Z8	Uncharacterized protein; Belongs to the class-I aminoacyl-tRNA synthetase family.	Uncharacterized protein; Belongs to the class-I aminoacyl-tRNA synthetase family.	0.865
A0A2G5CC93	A0A2G5CC75	Uncharacterized protein; Belongs to the class-I aminoacyl-tRNA synthetase family.	Uncharacterized protein; Belongs to the class-I aminoacyl-tRNA synthetase family.	0.794
A0A2G5CC93	A0A2G5D0N9	Uncharacterized protein; Belongs to the class-I aminoacyl-tRNA synthetase family.	tRNA-synt_1 domain-containing protein.	0.794
A0A2G5CC93	A0A2G5EY96	Uncharacterized protein; Belongs to the class-I aminoacyl-tRNA synthetase family.	tRNA-synt_1 domain-containing protein.	0.808
A0A2G5CC93	A0A2G5F0I1	Uncharacterized protein; Belongs to the class-I aminoacyl-tRNA synthetase family.	Uncharacterized protein; Belongs to the class-I aminoacyl-tRNA synthetase family.	0.840
A0A2G5CC93	A0A2G5F8Z8	Uncharacterized protein; Belongs to the class-I aminoacyl-tRNA synthetase family.	Uncharacterized protein; Belongs to the class-I aminoacyl-tRNA synthetase family.	0.829
A0A2G5D0N9	A0A2G5C3X3	tRNA-synt_1 domain-containing protein.	DALR_2 domain-containing protein.	0.566
A0A2G5D0N9	A0A2G5CC93	tRNA-synt_1 domain-containing protein.	Uncharacterized protein; Belongs to the class-I aminoacyl-tRNA synthetase family.	0.794
A0A2G5D0N9	A0A2G5D688	tRNA-synt_1 domain-containing protein.	Uncharacterized protein; Belongs to the class-I aminoacyl-tRNA synthetase family.	0.794
A0A2G5D0N9	A0A2G5DKL9	tRNA-synt_1 domain-containing protein.	tRNA-synt_1e domain-containing protein.	0.566