10 items (Pseudomonas antarctica) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A7J50_1570	Urea carboxylase; Pfam:pfam02626 Allophanate hydrolase subunit 2. (1230 aa)
	A7J50_0448	Dihydrolipoamide acetyltransferase; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). (548 aa)
	A7J50_0600	acetyl-CoA carboxylase biotin carboxyl carrier protein; This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA. (152 aa)
	A7J50_1955	Dihydrolipoamide succinyltransferase; E2 component of the 2-oxoglutarate dehydrogenase (OGDH) complex which catalyzes the second step in the conversion of 2- oxoglutarate to succinyl-CoA and CO(2). (408 aa)
	A7J50_3553	3-methylcrotonyl-CoA carboxylase subunit alpha; Pfam:pfam02786 Carbamoyl-phosphate synthase L chain, ATP binding domain. (641 aa)
	A7J50_3621	Branched-chain alpha-keto acid dehydrogenase subunit E2; Pfam:pfam00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain). (419 aa)
	A7J50_4075	3-methylcrotonyl-CoA carboxylase subunit alpha; Pfam:pfam02786 Carbamoyl-phosphate synthase L chain, ATP binding domain. (640 aa)
	gcvH	Glycine cleavage system H protein; The glycine cleavage system catalyzes the degradation of glycine. The H protein shuttles the methylamine group of glycine from the P protein to the T protein. (127 aa)
	gcvH-2	Glycine cleavage system protein H; The glycine cleavage system catalyzes the degradation of glycine. The H protein shuttles the methylamine group of glycine from the P protein to the T protein. (127 aa)
	A7J50_5805	Pfam:pfam02436 Conserved carboxylase domain. (602 aa)

Your Current Organism:

Pseudomonas antarctica

NCBI taxonomy Id: 219572
Other names: CCUG 49625, DSM 15318, LMG 22709, LMG:22709, MTCC 4992, Pseudomonas antarctica Reddy et al. 2004, strain CMS 35

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A7J50_0448	A7J50_0600	A7J50_0448	A7J50_0600	Dihydrolipoamide acetyltransferase; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2).	acetyl-CoA carboxylase biotin carboxyl carrier protein; This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA.	0.915
A7J50_0448	A7J50_5805	A7J50_0448	A7J50_5805	Dihydrolipoamide acetyltransferase; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2).	Pfam:pfam02436 Conserved carboxylase domain.	0.831
A7J50_0448	gcvH	A7J50_0448	A7J50_4658	Dihydrolipoamide acetyltransferase; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2).	Glycine cleavage system H protein; The glycine cleavage system catalyzes the degradation of glycine. The H protein shuttles the methylamine group of glycine from the P protein to the T protein.	0.507
A7J50_0448	gcvH-2	A7J50_0448	A7J50_5604	Dihydrolipoamide acetyltransferase; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2).	Glycine cleavage system protein H; The glycine cleavage system catalyzes the degradation of glycine. The H protein shuttles the methylamine group of glycine from the P protein to the T protein.	0.507
A7J50_0600	A7J50_0448	A7J50_0600	A7J50_0448	acetyl-CoA carboxylase biotin carboxyl carrier protein; This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA.	Dihydrolipoamide acetyltransferase; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2).	0.915
A7J50_0600	A7J50_1570	A7J50_0600	A7J50_1570	acetyl-CoA carboxylase biotin carboxyl carrier protein; This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA.	Urea carboxylase; Pfam:pfam02626 Allophanate hydrolase subunit 2.	0.914
A7J50_0600	A7J50_3553	A7J50_0600	A7J50_3553	acetyl-CoA carboxylase biotin carboxyl carrier protein; This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA.	3-methylcrotonyl-CoA carboxylase subunit alpha; Pfam:pfam02786 Carbamoyl-phosphate synthase L chain, ATP binding domain.	0.916
A7J50_0600	A7J50_4075	A7J50_0600	A7J50_4075	acetyl-CoA carboxylase biotin carboxyl carrier protein; This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA.	3-methylcrotonyl-CoA carboxylase subunit alpha; Pfam:pfam02786 Carbamoyl-phosphate synthase L chain, ATP binding domain.	0.918
A7J50_1570	A7J50_0600	A7J50_1570	A7J50_0600	Urea carboxylase; Pfam:pfam02626 Allophanate hydrolase subunit 2.	acetyl-CoA carboxylase biotin carboxyl carrier protein; This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA.	0.914
A7J50_1570	A7J50_5805	A7J50_1570	A7J50_5805	Urea carboxylase; Pfam:pfam02626 Allophanate hydrolase subunit 2.	Pfam:pfam02436 Conserved carboxylase domain.	0.997
A7J50_1955	gcvH	A7J50_1955	A7J50_4658	Dihydrolipoamide succinyltransferase; E2 component of the 2-oxoglutarate dehydrogenase (OGDH) complex which catalyzes the second step in the conversion of 2- oxoglutarate to succinyl-CoA and CO(2).	Glycine cleavage system H protein; The glycine cleavage system catalyzes the degradation of glycine. The H protein shuttles the methylamine group of glycine from the P protein to the T protein.	0.507
A7J50_1955	gcvH-2	A7J50_1955	A7J50_5604	Dihydrolipoamide succinyltransferase; E2 component of the 2-oxoglutarate dehydrogenase (OGDH) complex which catalyzes the second step in the conversion of 2- oxoglutarate to succinyl-CoA and CO(2).	Glycine cleavage system protein H; The glycine cleavage system catalyzes the degradation of glycine. The H protein shuttles the methylamine group of glycine from the P protein to the T protein.	0.568
A7J50_3553	A7J50_0600	A7J50_3553	A7J50_0600	3-methylcrotonyl-CoA carboxylase subunit alpha; Pfam:pfam02786 Carbamoyl-phosphate synthase L chain, ATP binding domain.	acetyl-CoA carboxylase biotin carboxyl carrier protein; This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA.	0.916
A7J50_3553	A7J50_5805	A7J50_3553	A7J50_5805	3-methylcrotonyl-CoA carboxylase subunit alpha; Pfam:pfam02786 Carbamoyl-phosphate synthase L chain, ATP binding domain.	Pfam:pfam02436 Conserved carboxylase domain.	0.996
A7J50_3621	gcvH	A7J50_3621	A7J50_4658	Branched-chain alpha-keto acid dehydrogenase subunit E2; Pfam:pfam00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain).	Glycine cleavage system H protein; The glycine cleavage system catalyzes the degradation of glycine. The H protein shuttles the methylamine group of glycine from the P protein to the T protein.	0.565
A7J50_3621	gcvH-2	A7J50_3621	A7J50_5604	Branched-chain alpha-keto acid dehydrogenase subunit E2; Pfam:pfam00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain).	Glycine cleavage system protein H; The glycine cleavage system catalyzes the degradation of glycine. The H protein shuttles the methylamine group of glycine from the P protein to the T protein.	0.582
A7J50_4075	A7J50_0600	A7J50_4075	A7J50_0600	3-methylcrotonyl-CoA carboxylase subunit alpha; Pfam:pfam02786 Carbamoyl-phosphate synthase L chain, ATP binding domain.	acetyl-CoA carboxylase biotin carboxyl carrier protein; This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA.	0.918
A7J50_4075	A7J50_5805	A7J50_4075	A7J50_5805	3-methylcrotonyl-CoA carboxylase subunit alpha; Pfam:pfam02786 Carbamoyl-phosphate synthase L chain, ATP binding domain.	Pfam:pfam02436 Conserved carboxylase domain.	0.996
A7J50_5805	A7J50_0448	A7J50_5805	A7J50_0448	Pfam:pfam02436 Conserved carboxylase domain.	Dihydrolipoamide acetyltransferase; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2).	0.831
A7J50_5805	A7J50_1570	A7J50_5805	A7J50_1570	Pfam:pfam02436 Conserved carboxylase domain.	Urea carboxylase; Pfam:pfam02626 Allophanate hydrolase subunit 2.	0.997