STRINGSTRING
ybiP ybiP STY1173 STY1173 STY1174 STY1174 STY1175 STY1175 STY1378 STY1378 STY1544 STY1544 STY1545 STY1545 STY1646 STY1646 STY2145 STY2145 STY2173 STY2173 STY2174 STY2174 insB insB STY2420 STY2420 STY2846 STY2846 STY2923 STY2923 STY3460 STY3460 STY4124 STY4124 insB-2 insB-2 STY4135 STY4135 damX damX STY4441 STY4441 trpR trpR
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
ybiPPutative membrane protein; Similar to Escherichia coli hypothetical 59.7 kDa protein in ompx-moeb intergenic region ybiP SW:YBIP_ECOLI (P75785) (527 aa) fasta scores: E(): 0, 83.8% id in 526 aa; Orthologue of E. coli YBIP_ECOLI; Fasta hit to YBIP_ECOLI (527 aa), 84% identity in 526 aa overlap. (526 aa)
STY1173Conserved hypothetical protein; Orthologue of E. coli YCDX_ECOLI; Fasta hit to YCDX_ECOLI (245 aa), 89% identity in 245 aa overlap; Belongs to the PHP family. (245 aa)
STY1174Conserved hypothetical protein; Orthologue of E. coli YCDY_ECOLI; Fasta hit to YCDY_ECOLI (184 aa), 86% identity in 184 aa overlap. (184 aa)
STY1175Putative membrane protein; Fasta hit to YAHC_ECOLI (165 aa), 30% identity in 156 aa overlap; Orthologue of E. coli YCDZ_ECOLI; Fasta hit to YCDZ_ECOLI (179 aa), 84% identity in 179 aa overlap. (176 aa)
STY1378Transcriptional regulatory protein TyrR; Involved in transcriptional regulation of aromatic amino acid biosynthesis and transport. Modulates the expression of at least 8 unlinked operons. Seven of these operons are regulated in response to changes in the concentration of the three aromatic amino acids (phenylalanine, tyrosine and tryptophan). These amino acids are suggested to act as co-effectors which bind to the TyrR protein to form an active regulatory protein. In most cases TyrR causes negative regulation, but positive effects on the tyrP gene have been observed at high phenylalani [...] (513 aa)
STY1544Putative membrane protein; Orthologue of E. coli ydeF (YDEE_ECOLI); Fasta hit to YDEE_ECOLI (395 aa), 77% identity in 395 aa overlap. (395 aa)
STY1545Putative periplasmic protein; Orthologue of E. coli ydeI (YDEI_ECOLI); Fasta hit to YDEI_ECOLI (130 aa), 80% identity in 107 aa overlap. (118 aa)
STY1646Putative membrane protein; Orthologue of E. coli YDGC_ECOLI; Fasta hit to YDGC_ECOLI (111 aa), 81% identity in 111 aa overlap. (111 aa)
STY2145Tyrosine-specific transport protein; Fasta hit to TNAB_ECOLI (415 aa), 32% identity in 409 aa overlap; Fasta hit to MTR_ECOLI (414 aa), 34% identity in 399 aa overlap; Orthologue of E. coli tyrP (TYRP_ECOLI); Fasta hit to TYRP_ECOLI (403 aa), 89% identity in 403 aa overlap. (403 aa)
STY2173Putative membrane protein; Similar to Salmonella typhimurium hypothetical protein yedE SW:YEDE_SALTY (Q06400) (401 aa) fasta scores: E(): 0, 99.3% id in 401 aa. Contains hydrophobic, probable membrane-spanning regions; Orthologue of E. coli yedE (YEDE_ECOLI); Fasta hit to YEDE_ECOLI (401 aa), 92% identity in 399 aa overlap. (421 aa)
STY2174Conserved hypothetical protein; Fasta hit to YHHP_ECOLI (81 aa), 31% identity in 72 aa overlap; Orthologue of E. coli yedF (YEDF_ECOLI); Fasta hit to YEDF_ECOLI (77 aa), 100% identity in 77 aa overlap; Belongs to the sulfur carrier protein TusA family. (77 aa)
insBSimilar to Escherichia coli insertion element IS1 protein InsB insB SW:INSB_ECOLI (P03830; P77707) (167 aa) fasta scores: E(): 0, 97.0% id in 167 aa. (167 aa)
STY2420Insertion element IS1 protein InsA; Absolutely required for transposition of IS1. (91 aa)
STY2846Conserved hypothetical protein; Orthologue of E. coli yfiM (YFIM_ECOLI); Fasta hit to YFIM_ECOLI (90 aa), 80% identity in 90 aa overlap. (107 aa)
STY2923Putative membrane protein; Exports L-alanine; Belongs to the AlaE exporter family. (149 aa)
STY3460Probable amino acid permease; Fasta hit to TNAB_ECOLI (415 aa), 54% identity in 406 aa overlap; Fasta hit to TYRP_ECOLI (403 aa), 35% identity in 401 aa overlap; Orthologue of E. coli mtr (MTR_ECOLI); Fasta hit to MTR_ECOLI (414 aa), 95% identity in 414 aa overlap. (414 aa)
STY4124Insertion element IS1 protein InsA; Fasta hit to ISA2_ECOLI (91 aa), 90% identity in 91 aa overlap; Paralogue of E. coli insA_5 (ISA1_ECOLI); Fasta hit to ISA1_ECOLI (91 aa), 98% identity in 91 aa overlap. (91 aa)
insB-2Similar to Escherichia coli insertion element IS1 protein InsB insB SW:INSB_ECOLI (P03830) (167 aa) fasta scores: E(): 0, 97.0% id in 167 aa. (167 aa)
STY4135Putative exported amidase; Orthologue of E. coli BAX_ECOLI; Fasta hit to BAX_ECOLI (274 aa), 89% identity in 274 aa overlap. Contains a probable N-terminal signal sequence. (274 aa)
damXDamX protein; Non-essential cell division protein. (425 aa)
STY4441Similar to Escherichia coli quinone oxidoreductase qor SW:QOR_ECOLI (P28304) (327 aa) fasta scores: E(): 0, 90.2% id in 327 aa, and to Pseudomonas aeruginosa quinone oxidoreductase qor SW:QOR_PSEAE (P43903) (325 aa) fasta scores: E(): 0, 60.9% id in 327 aa. (327 aa)
trpRProbable trp operon repressor; This protein is an aporepressor. When complexed with L- tryptophan it binds the operator region of the trp operon (5'- ACTAGT-'3') and prevents the initiation of transcription. The complex also regulates trp repressor biosynthesis by binding to its regulatory region (By similarity). (108 aa)
Your Current Organism:
Salmonella enterica Typhi
NCBI taxonomy Id: 220341
Other names: S. enterica subsp. enterica serovar Typhi str. CT18, Salmonella enterica subsp. enterica serovar Typhi CT18, Salmonella enterica subsp. enterica serovar Typhi str. CT18, Salmonella enterica subsp. enterica serovar Typhi strain CT18, Salmonella typhi CT18
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