STRINGSTRING
waaQ waaQ waaG waaG waaP waaP waaB waaB waaI waaI waaJ waaJ waaY waaY waaZ waaZ waaK waaK waaL waaL
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
waaQSimilar to Salmonella typhimurium lipopolysaccharide core biosynthesis protein rfaq waaQ TR:O68270 (EMBL:AF026386) (344 aa) fasta scores: E(): 0, 99.4% id in 344 aa. (344 aa)
waaGSimilar to Salmonella typhimurium lipopolysaccharide core biosynthesis protein rfaG waaG TR:O68269 (EMBL:AF026386) (374 aa) fasta scores: E(): 0, 98.7% id in 374 aa, and to Escherichia coli UDP-glucose: waaG TR:Q9R2L8 (EMBL:AF019746) (374 aa) fasta scores: E(): 0, 88.5% id in 374 aa. (374 aa)
waaPLipopolysaccharide core biosynthesis protein; Catalyzes the phosphorylation of heptose(I) of the outer membrane lipopolysaccharide core; Belongs to the protein kinase superfamily. KdkA/rfaP family. (265 aa)
waaBSimilar to Salmonella typhimurium lipopolysaccharide 1,6-galactosyltransferase rfab or waaB SW:RFAB_SALTY (Q06994) (359 aa) fasta scores: E(): 0, 98.1% id in 359 aa, and to Escherichia coli lipopolysaccharide 1,6-galactosyltransferase rfab or waaB SW:RFAB_ECOLI (P27127) (369 aa) fasta scores: E(): 0, 63.8% id in 359 aa. (359 aa)
waaISimilar to Salmonella typhimurium lipopolysaccharide 1,3-galactosyltransferase SW:RFAI_SALTY (P19816) (338 aa) fasta scores: E(): 0, 97.0% id in 338 aa, and to Escherichia coli lipopolysaccharide 1,3-galactosyltransferase SW:RFAI_ECOLI (P27128) (339 aa) fasta scores: E(): 0, 54.9% id in 337 aa. (337 aa)
waaJSimilar to Salmonella typhimurium lipopolysaccharide 1,2-glucosyltransferase SW:RFAJ_SALTY (P19817) (336 aa) fasta scores: E(): 0, 99.1% id in 336 aa, and to Escherichia coli lipopolysaccharide 1,2-glucosyltransferase SW:RFAJ_ECOLI (P27129) (338 aa) fasta scores: E(): 0, 58.4% id in 339 aa. (336 aa)
waaYSimilar to Salmonella typhimurium lipopolysaccharide core biosynthesis protein RfaY SW:RFAY_SALTY (P26472) (232 aa) fasta scores: E(): 0, 99.1% id in 232 aa, and to Escherichia coli lipopolysaccharide core biosynthesis protein RfaY SW:RFAY_ECOLI (P27240) (232 aa) fasta scores: E(): 0, 69.4% id in 232 aa. (232 aa)
waaZSimilar to Salmonella typhimurium lipopolysaccharide core biosynthesis protein RfaZ SW:RFAZ_SALTY (P26473) (269 aa) fasta scores: E(): 0, 99.3% id in 269 aa, and to Escherichia coli lipopolysaccharide core biosynthesis protein RfaZ SW:RFAZ_ECOLI (P27241) (283 aa) fasta scores: E(): 0, 70.2% id in 262 aa. (269 aa)
waaKSimilar to Salmonella typhimurium lipopolysaccharide 1,2-N-acetylglucosaminetransferase SW:RFAK_SALTY (P26470) (381 aa) fasta scores: E(): 0, 99.2% id in 381 aa, and to Escherichia coli glcnac transferase waaK TR:O68201 (EMBL:AF019375) (380 aa) fasta scores: E(): 0, 73.6% id in 379 aa. (381 aa)
waaLO-antigen ligase; Similar to Salmonella typhimurium O-antigen ligase SW:RFAL_SALTY (P26471) (404 aa) fasta scores: E(): 0, 98.0% id in 404 aa, and to Escherichia coli lipid A-core:surface polymer ligase waaL TR:O68200 (EMBL:AF019375) (405 aa) fasta scores: E(): 0, 65.9% id in 405 aa. (404 aa)
Your Current Organism:
Salmonella enterica Typhi
NCBI taxonomy Id: 220341
Other names: S. enterica subsp. enterica serovar Typhi str. CT18, Salmonella enterica subsp. enterica serovar Typhi CT18, Salmonella enterica subsp. enterica serovar Typhi str. CT18, Salmonella enterica subsp. enterica serovar Typhi strain CT18, Salmonella typhi CT18
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.