STRINGSTRING
bcfA bcfA bcfB bcfB stbE stbE stbD stbD stbC stbC stbB stbB stbA stbA stdC stdC stdB stdB stdA stdA sthB sthB sthA sthA
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
bcfAFimbrial subunit; Similar to Salmonella typhimurium fimbrial subunit BCFA TR:Q9X604 (EMBL:AF130422) fasta scores: E(): 0, 99.4% id in 180 aa, and to Klebsiella pneumoniae fimbrial subunit type 1 precursor FIM SW:FM12_KLEPN (P12903) fasta scores: E(): 2.7e-22, 48.4% id in 184 aa; Fasta hit to YCBQ_ECOLI (182 aa), 40% identity in 180 aa overlap; Fasta hit to FIMF_ECOLI (176 aa), 30% identity in 152 aa overlap; Fasta hit to SFMA_ECOLI (191 aa), 39% identity in 179 aa overlap; Fasta hit to FIMG_ECOLI (167 aa), 34% identity in 164 aa overlap; Paralogue of E. coli fimA (FM1A_ECOLI); Fasta hi [...] (180 aa)
bcfBFimbrial chaperone; Similar to Salmonella typhimurium fimbrial chaperone BCFB TR:Q9X605 (EMBL:AF130422) fasta scores: E(): 0, 98.7% id in 228 aa, and to Salmonella typhimurium chaperone protein fimc precursor FIMC SW:FIMC_SALTY (P37923) fasta scores: E(): 0, 49.5% id in 220 aa; Fasta hit to YCBR_ECOLI (233 aa), 45% identity in 231 aa overlap; Fasta hit to YRAI_ECOLI (231 aa), 35% identity in 225 aa overlap; Fasta hit to FIMC_ECOLI (241 aa), 46% identity in 237 aa overlap; Fasta hit to YFCS_ECOLI (250 aa), 33% identity in 225 aa overlap; Fasta hit to YCBF_ECOLI (245 aa), 33% identity in [...] (228 aa)
stbESimilar to Klebsiella pneumoniae chaperone protein MrkB precursor mrkB SW:MRKB_KLEPN (P21646) (233 aa) fasta scores: E(): 9.3e-21, 32.4% id in 204 aa, and to Bordetella pertussis chaperone protein fimb/fhad precursor fimb or fhaD SW:FIMB_BORPE (P33409) (244 aa) fasta scores: E(): 1.8e-18, 31.7% id in 221 aa; Fasta hit to YRAI_ECOLI (231 aa), 32% identity in 222 aa overlap; Fasta hit to ECPD_ECOLI (246 aa), 32% identity in 213 aa overlap; Fasta hit to SFMC_ECOLI (230 aa), 30% identity in 207 aa overlap; Fasta hit to YBGP_ECOLI (242 aa), 31% identity in 229 aa overlap; Paralogue of E. co [...] (252 aa)
stbDPutative fimbrial protein; Similar to Yersinia pestis protein showing similarity with pilin TR:Q9ZC29 (EMBL:AL031866) (449 aa) fasta scores: E(): 1.3e-16, 28.6% id in 420 aa. (441 aa)
stbCSimilar to Escherichia coli outer membrane usher protein FimD precursor fimD SW:FIMD_ECOLI (P30130) (878 aa) fasta scores: E(): 0, 31.7% id in 877 aa, and to Salmonella typhimurium outer membrane usher protein FimD precursor fimD SW:FIMD_SALTY (P37924) (870 aa) fasta scores: E(): 0, 32.7% id in 860 aa; Fasta hit to YCBS_ECOLI (866 aa), 31% identity in 872 aa overlap; Fasta hit to YRAJ_ECOLI (838 aa), 32% identity in 840 aa overlap; Fasta hit to HTRE_ECOLI (865 aa), 31% identity in 853 aa overlap; Fasta hit to SFMD_ECOLI (867 aa), 32% identity in 856 aa overlap; Paralogue of E. coli fim [...] (853 aa)
stbBSimilar to Escherichia coli chaperone protein EcpD precursor ecpD SW:ECPD_ECOLI (P33128) (246 aa) fasta scores: E(): 7.4e-32, 40.3% id in 248 aa, and to Bordetella pertussis chaperone protein fimb/fhad precursor fimb or fhaD SW:FIMB_BORPE (P33409) (244 aa) fasta scores: E(): 3.2e-24, 38.5% id in 208 aa; Fasta hit to YEHC_ECOLI (239 aa), 39% identity in 258 aa overlap; Fasta hit to YFCS_ECOLI (250 aa), 34% identity in 233 aa overlap; Fasta hit to SFMC_ECOLI (230 aa), 33% identity in 236 aa overlap; Paralogue of E. coli ecpD (ECPD_ECOLI); Fasta hit to ECPD_ECOLI (246 aa), 40% identity in [...] (253 aa)
stbAProbable fimbrial protein; Similar to Yersinia pestis similar to pilin precursor f17d-a TR:Q9ZC32 (EMBL:AL031866) (176 aa) fasta scores: E(): 2.2e-24, 45.5% id in 176 aa, and to Escherichia coli F17A fimbrial subunit precursor f17A TR:Q9RH94 (EMBL:AF055308) (181 aa) fasta scores: E(): 6.7e-16, 39.9% id in 183 aa. (178 aa)
stdCWeakly similar to Escherichia coli chaperone protein PapD involved in pili assembly SW:PAPD_ECOLI (P15319) (239 aa) fasta scores: E(): 5.9e-33, 37.8% id in 238 aa; Paralogue of E. coli YBGP_ECOLI; Fasta hit to YBGP_ECOLI (242 aa), 40% identity in 222 aa overlap. (247 aa)
stdBSimilar to Escherichia coli hypothetical outer membrane usher protein YqiG SW:YQIG_ECOLI (P76655) (821 aa) fasta scores: E(): 0, 42.2% id in 812 aa. (829 aa)
stdAProbable fimbrial protein; Similar to Escherichia coli hypothetical fimbrial-like protein precursor YbgD SW:YBGD_ECOLI (P37909; P75751) (188 aa) fasta scores: E(): 4.9e-11, 31.5% id in 200 aa; Fasta hit to FIMF_ECOLI (176 aa), 32% identity in 160 aa overlap; Fasta hit to YFCP_ECOLI (179 aa), 31% identity in 159 aa overlap. (193 aa)
sthBSimilar to Escherichia coli chaperone protein FimC SW:FIMC_ECOLI (P31697; P71220) (241 aa) fasta scores: E(): 6.3e-23, 32.6% id in 218 aa, and to Proteus mirabilis type 1 fimbrial chaperone AtfB TR:P72210 (EMBL:Z78535) (225 aa) fasta scores: E(): 7.1e-24, 33.0% id in 221 aa, and to Salmonella typhi FinC gene finC TR:Q56085 (EMBL:X74602) (237 aa) fasta scores: E(): 5.3e-23, 33.0% id in 215 aa. (227 aa)
sthAPutative fimbrial protein; Similar to Escherichia coli major fimbrial subunit protein precursor f17d-A TR:Q47196 (EMBL:L77091) (181 aa) fasta scores: E(): 2.3e-10, 33.0% id in 188 aa, and to Escherichia coli minor fimbrial subunit, precursor polypeptide fimF TR:O87737 (EMBL:AJ225176) (176 aa) fasta scores: E(): 5.5e-10, 31.0% id in 184 aa. (181 aa)
Your Current Organism:
Salmonella enterica Typhi
NCBI taxonomy Id: 220341
Other names: S. enterica subsp. enterica serovar Typhi str. CT18, Salmonella enterica subsp. enterica serovar Typhi CT18, Salmonella enterica subsp. enterica serovar Typhi str. CT18, Salmonella enterica subsp. enterica serovar Typhi strain CT18, Salmonella typhi CT18
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