STRINGSTRING
STY3182 STY3182 STY3183 STY3183 STY3847 STY3847 STY3848 STY3848 STY4886 STY4886 STY4887 STY4887
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
STY3182Hypothetical protein (assiciated with virulence); Toxic component of a toxin-antitoxin (TA) system. A site- specific tRNA-(fMet) endonuclease, it cleaves both charged and uncharged tRNA-(fMet) between positions 38 and 39 at the anticodon stem-loop boundary. Its toxic effects are neutralized by expression of cognate antitoxin VapB; Belongs to the PINc/VapC protein family. (132 aa)
STY3183Hypothetical protein (assiciated with virulence); Similar to Salmonella dublin VagC a plasmid encoded protein associated with virulence SW:VAGC_SALDU (Q05459) (76 aa) fasta scores: E(): 0.00032, 38.9% id in 72 aa and to Shigella flexneri hypothetical protein Stborf1 SW:YVO1_SHIFL (O06663) (75 aa) fasta scores: E(): 6.8e-21, 69.3% id in 75 aa. (75 aa)
STY3847Conserved hypothetical protein; Paralogue of E. coli ygjN (YGJN_ECOLI); Fasta hit to YGJN_ECOLI (104 aa), 40% identity in 99 aa overlap. (103 aa)
STY3848Conserved hypothetical protein; Paralogue of E. coli ygjM (YGJM_ECOLI); Fasta hit to YGJM_ECOLI (138 aa), 46% identity in 122 aa overlap. (148 aa)
STY4886Hypothetical protein; Similar to part of Synechocystis sp hypothetical protein SLL1965 TR:P73378 (EMBL:D90905) (136 aa) fasta scores: E(): 2.8e-09, 39.8% id in 93 aa. (95 aa)
STY4887Hypothetical protein; No database matches. (100 aa)
Your Current Organism:
Salmonella enterica Typhi
NCBI taxonomy Id: 220341
Other names: S. enterica subsp. enterica serovar Typhi str. CT18, Salmonella enterica subsp. enterica serovar Typhi CT18, Salmonella enterica subsp. enterica serovar Typhi str. CT18, Salmonella enterica subsp. enterica serovar Typhi strain CT18, Salmonella typhi CT18
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