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| | pduD | Similar to Salmonella typhimurium diol dehydratase medium subunit pduD TR:O31041 (EMBL:AF026270) (224 aa) fasta scores: E(): 0, 98.2% id in 224 aa and Klebsiella oxytoca diol dehydratase beta subunit pddB TR:Q59471 (EMBL:D45071) (224 aa) fasta scores: E(): 0, 95.1% id in 224 aa. (224 aa) |
| | pduE | Similar to Salmonella typhimurium diol dehydratase small subunit pduE TR:O31042 (EMBL:AF026270) (173 aa) fasta scores: E(): 0, 99.4% id in 173 aa, and to Klebsiella oxytoca diol dehydratase gamma pddC TR:Q59472 (EMBL:D45071) (173 aa) fasta scores: E(): 0, 96.5% id in 173 aa. (173 aa) |
| | pduG | PduG protein; Similar to Salmonella enterica serovar Typhimurium protein PduG pduG TR:O31043 (EMBL:AF026270) (610 aa) fasta scores: E(): 0, 99.0% id in 610 aa and Klebsiella oxytoca diol dehydratase-reactivating factor large subunit ddrA TR:O68195 (EMBL:AF017781) (610 aa) fasta scores: E(): 0, 95.4% id in 608 aa. May be involved in removing inactive cofactor from the PduCDE dehydratase. Possibly also an adenosyltransferase (experimental). (610 aa) |
| | pduH | PduH protein; Similar to Salmonella enterica serovar Typhimurium protein PduH pduH TR:Q9XDN8 (EMBL:AF026270) (123 aa) fasta scores: E(): 0, 99.1% id in 111 aa and Klebsiella oxytoca diol dehydratase-reactivating factor small subunit ddrB TR:O68196 (EMBL:AF017781) (125 aa) fasta scores: E(): 0, 88.8% id in 116 aa. May be involved in removing inactive cofactor from the PduCDE dehydratase (in combination with pduG). A frameshift at codon 112 alters its C-terminus with respect to the homologues described above. (116 aa) |
| | pduJ | Putative propanediol utilization protein PduJ; Similar to Salmonella enterica serovar Typhimurium protein PduJ pduJ TR:Q9XDN7 (EMBL:AF026270) (91 aa) fasta scores: E(): 4.2e-31, 100.0% id in 91 aa, Salmonella typhimurium propanediol utilization protein PduA pduA SW:PDUA_SALTY (P37448) (97 aa) fasta scores: E(): 6.7e-24, 84.9% id in 86 aa and Salmonella typhimurium ethanolamine utilization protein EutM precursor eutM or cchA SW:EUTM_SALTY (P41791) (96 aa) fasta scores: E(): 4.1e-18, 64.4% id in 87 aa. The Salmonella enterica homologue has been implicated in polyhedral body formation whi [...] (91 aa) |
| | pduK | Putative propanediol utilization protein PduK; Similar to Salmonella enterica serovar Typhimurium protein PduK pduK TR:Q9XDN6 (EMBL:AF026270) (160 aa) fasta scores: E(): 0, 98.1% id in 160 aa. The Salmonella enterica homologue has been implicated in polyhedral body formation which may protect the cell from toxic metabolites, or protect the dehydratase from oxygen. (160 aa) |
| | pduL | Conserved hypothetical protein; Involved in 1,2-propanediol (1,2-PD) degradation by catalyzing the conversion of propanoyl-CoA to propanoyl-phosphate. (210 aa) |
| | pduM | Conserved hypothetical protein; Similar to Salmonella enterica serovar Typhimurium protein PduM pduM TR:Q9XDN4 (EMBL:AF026270) (163 aa) fasta scores: E(): 0, 96.3% id in 163 aa. (163 aa) |
| | pduO | Conserved hypothetical protein; Similar to Salmonella enterica serovar Typhimurium protein PduO pduO TR:Q9XDN2 (EMBL:AF026270) (337 aa) fasta scores: E(): 0, 92.6% id in 337 aa. N-terminal half is similar to many e.g. Clostridium pasteurianum hypothetical protein TR:O30452 (EMBL:AF006034) (173 aa) fasta scores: E(): 2.3e-21, 43.7% id in 167 aa and Citrobacter freundii hypothetical protein SW:YDHW_CITFR (P45515) (176 aa) fasta scores: E(): 3.2e-25, 47.9% id in 167 aa. C-terminal half is similar to many e.g. Clostridium pasteurianum hypothetical protein TR:O30453 (EMBL:AF006034) (143 aa) [...] (336 aa) |
| | pduP | Putative CoA-dependent proprionaldehyde dehydrogenase; Similar to Salmonella enterica serovar Typhimurium protein PduP pduP TR:Q9XDN1 (EMBL:AF026270) (464 aa) fasta scores: E(): 0, 99.1% id in 464 aa and Salmonella typhimurium ethanolamine utilization protein EutE eutE SW:EUTE_SALTY (P41793) (467 aa) fasta scores: E(): 0, 45.7% id in 473 aa; Paralogue of E. coli eutE (EUTE_ECOLI); Fasta hit to EUTE_ECOLI (467 aa), 45% identity in 470 aa overlap. (464 aa) |
| | pduQ | Putative propanol dehydrogenase; Similar to Salmonella enterica serovar Typhimurium protein PduQ pduQ TR:Q9XDN0 (EMBL:AF026270) (370 aa) fasta scores: E(): 0, 97.8% id in 370 aa and Clostridium acetobutylicum NADPH-dependent butanol dehydrogenase adh1 SW:ADH1_CLOAB (P13604) (388 aa) fasta scores: E(): 7e-32, 35.6% id in 385 aa; Fasta hit to EUTG_ECOLI (395 aa), 38% identity in 380 aa overlap; Fasta hit to FUCO_ECOLI (383 aa), 32% identity in 383 aa overlap; Paralogue of E. coli yiaY (ADH2_ECOLI); Fasta hit to ADH2_ECOLI (383 aa), 37% identity in 346 aa overlap. (370 aa) |
| | pduS | Putative ferredoxin; Similar to Salmonella enterica serovar Typhimurium protein PduS pduS TR:Q9XDM9 (EMBL:AF026270) (451 aa) fasta scores: E(): 0, 97.7% id in 442 aa and Clostridium sticklandii electron transfer protein from the D-proline reductase cluster prdC TR:Q9L4Q5 (EMBL:AJ130879) (402 aa) fasta scores: E(): 1.5e-24, 32.3% id in 337 aa. The N-terminus is truncated by 9 amino acids with respect to the Salmonella enterica homologue (by a stop codon). The putative start codon indicated here is at codon 10 of the Salmonella enterica homologue. (442 aa) |
| | pduT | Putative propanediol utilization protein PduT; Similar to Salmonella enterica serovar Typhimurium protein PduT pduT TR:Q9XDM8 (EMBL:AF026270) (184 aa) fasta scores: E(): 0, 98.9% id in 184 aa and to part of Salmonella typhimurium ethanolamine utilization protein EutM precursor eutM or cchA SW:EUTM_SALTY (P41791) (96 aa) fasta scores: E(): 0.00067, 40.0% id in 80 aa. The Salmonella enterica homologue has been implicated in polyhedral body formation which may protect the cell from toxic metabolites, or protect the dehydratase from oxygen. (184 aa) |
| | STY2260 | Identical to Salmonella typhimurium propanediol utilization protein pduU SW:PDUU_SALTY (Q9XDM7) (116 aa) fasta scores: E(): 0, 100.0% id in 116 aa and Salmonella typhimurium ethanolamine utilization protein eutS SW:EUTS_SALTY (P76557) (111 aa) fasta scores: E(): 3.4e-22, 57.8% id in 109 aa. The Salmonella enterica homologue has been implicated in polyhedral body formation which may protect the cell from toxic metabolites, or protect the dehydratase from oxygen. (116 aa) |
| | pduV | Similar to Salmonella typhimurium propanediol utilization protein pduV SW:PDUV_SALTY (Q9XDM6) (150 aa) fasta scores: E(): 0, 97.3% id in 150 aa and Salmonella typhimurium ethanolamine utilization protein eutP SW:EUTP_SALTY (Q9ZFV6) (159 aa) fasta scores: E(): 2.7e-08, 32.2% id in 143 aa; Belongs to the EutP/PduV family. (150 aa) |
| | wzb | Putative protein-tyrosine phosphatase; Dephosphorylates Wzc. Required for the extracellular polysaccharide colanic acid synthesis. Probably involved in the export of colanic acid from the cell to medium. Involved in protection of cells against contact-dependent growth inhibition (CDI). (149 aa) |
| | STY2337 | DNA-3-methyladenine glycosidase II; Orthologue of E. coli alkA (3MG2_ECOLI); Fasta hit to 3MG2_ECOLI (282 aa), 74% identity in 279 aa overlap. (289 aa) |
| | STY2372 | Putative hydrolase; Shows weak similarity to Listeria monocytogenes ADP ribosyl glycohydrolase bvrC TR:Q9RLU1 (EMBL:AJ007877) (327 aa) fasta scores: E(): 3.3e-30, 33.5% id in 325 aa; Orthologue of E. coli YEGU_ECOLI; Fasta hit to YEGU_ECOLI (334 aa), 84% identity in 334 aa overlap. (334 aa) |
| | STY2406 | glutathione-S-transferase-family protein; Similar to e.g. Pseudomonas sp. U2 glutathione-S-transferase homolog from plasmid pWWU2 nagL TR:O86043 (EMBL:AF081362) (212 aa) fasta scores: E(): 2.4e-28, 42.1% id in 214 aa and Homo sapiens maleylacetoacetate isomerase gstz1 or maaI SW:MAAI_HUMAN (O43708; O15308; O75430) (216 aa) fasta scores: E(): 1.7e-24, 40.8% id in 211 aa. May be maleylpyruvate isomerase, given the presence of a putative gentisate 1,2-dioxygenase upstream. (214 aa) |
| | STY2407 | FAA-hydrolase-family protein; Similar to Pseudomonas sp. U2 putative isomerase-decarboxylase homolog from plasmid pWWU2 nagK TR:O86042 (EMBL:AF081362) (192 aa) fasta scores: E(): 2.7e-30, 46.9% id in 196 aa. May be fumarylpyruvate hydrolase, given the presence of putative gentisate 1,2-dioxygenase and putative maleylpyruvate isomerase in this gene cassette; Paralogue of E. coli P76004; Fasta hit to P76004 (219 aa), 39% identity in 208 aa overlap. (233 aa) |
| | STY2438 | Endonuclease IV; Endonuclease IV plays a role in DNA repair. It cleaves phosphodiester bonds at apurinic or apyrimidinic (AP) sites, generating a 3'-hydroxyl group and a 5'-terminal sugar phosphate. (285 aa) |
| | STY3774 | 50S ribosomal protein L31; Binds the 23S rRNA. (70 aa) |
| | STY3752 | N-acetyl-gamma-glutamyl-phosphate reductase; Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde. Belongs to the NAGSA dehydrogenase family. Type 1 subfamily. (334 aa) |
| | STY3751 | Acetylglutamate kinase; Catalyzes the ATP-dependent phosphorylation of N-acetyl-L- glutamate. (257 aa) |
| | STY3737 | Transcription antitermination protein; Participates in transcription elongation, termination and antitermination. In the absence of Rho, increases the rate of transcription elongation by the RNA polymerase (RNAP), probably by partially suppressing pausing. In the presence of Rho, modulates most Rho-dependent termination events by interacting with the RNAP to render the complex more susceptible to the termination activity of Rho. May be required to overcome a kinetic limitation of Rho to function at certain terminators. Also involved in ribosomal RNA transcriptional antitermination; Bel [...] (181 aa) |
| | STY3736 | 50S ribosomal subunit protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. (142 aa) |
| | STY3735 | 50S ribosomal subunit protein L1; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release. (234 aa) |
| | STY3734 | 50S ribosomal subunit protein L10; Protein L10 is also a translational repressor protein. It controls the translation of the rplJL-rpoBC operon by binding to its mRNA (By similarity); Belongs to the universal ribosomal protein uL10 family. (165 aa) |
| | STY3733 | 50S ribosomal subunit protein L7/L12; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation. (121 aa) |
| | STY3719 | Conserved hypothetical protein; Orthologue of E. coli yjaD (YJAD_ECOLI); Fasta hit to YJAD_ECOLI (257 aa), 92% identity in 257 aa overlap. (257 aa) |
| | STY3715 | Histone like DNA-binding protein HU-alpha (NS2) (HU-2); Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions; Belongs to the bacterial histone-like protein family. (90 aa) |
| | STY3710 | Phosphoribosylglycineamide synthetase; Orthologue of E. coli purD (PUR2_ECOLI); Fasta hit to PUR2_ECOLI (429 aa), 94% identity in 429 aa overlap; Belongs to the GARS family. (429 aa) |
| | STY3666 | Similar to proteins of unknown function from several bacteriophage including: Bacteriophage 186 hypothetical protein SW:CP80_BP186 (P41059) (75 aa) fasta scores: E(): 2.9e-19, 68.0% id in 75 aa, and to Bacteriophage P2 hypothetical protein SW:YO82_BPP2 (Q06424) (74 aa) fasta scores: E(): 1.2e-10, 47.1% id in 70 aa. Also similar to Escherichia coli TraR protein SW:TRAR_ECOLI (P41065) (73 aa) fasta scores: E(): 3.8e-06, 38.9% id in 72 aa. Four cysteines postulated to be required for zinc binding in TraR are conserved. (75 aa) |
| | STY3642 | ATP-dependent DNA helicase; Rep helicase is a single-stranded DNA-dependent ATPase involved in DNA replication; it can initiate unwinding at a nick in the DNA. It binds to the single-stranded DNA and acts in a progressive fashion along the DNA in the 3' to 5' direction. (674 aa) |
| | recQ | Similar to Escherichia coli ATP-dependent DNA helicase RecQ SW:RECQ_ECOLI (P15043; P76762) (607 aa) fasta scores: E(): 0, 94.6% id in 608 aa. (609 aa) |
| | STY3566 | Putative adenine-specific DNA-modification methylase; Orthologue of E. coli yhdJ (YHDJ_ECOLI); Fasta hit to YHDJ_ECOLI (294 aa), 80% identity in 283 aa overlap; Belongs to the N(4)/N(6)-methyltransferase family. (294 aa) |
| | STY3565 | Fis DNA-binding protein; Activates ribosomal RNA transcription. Plays a direct role in upstream activation of rRNA promoters; Belongs to the transcriptional regulatory Fis family. (98 aa) |
| | mreB | Rod shape-determining protein; Forms membrane-associated dynamic filaments that are essential for cell shape determination. Acts by regulating cell wall synthesis and cell elongation, and thus cell shape. A feedback loop between cell geometry and MreB localization may maintain elongated cell shape by targeting cell wall growth to regions of negative cell wall curvature. (347 aa) |
| | rnG | Ribonuclease G; Similar to Escherichia coli ribonuclease G cafA r rnG SW:RNG_ECOLI (P25537; P76677) (488 aa) fasta scores: E(): 0, 96.7% id in 488 aa. (489 aa) |
| | STY3525 | 50S ribosomal subunit protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. (142 aa) |
| | STY3524 | 30S ribosomal subunit protein S9; Orthologue of E. coli rpsI (RS9_ECOLI); Fasta hit to RS9_ECOLI (129 aa), 99% identity in 129 aa overlap; Belongs to the universal ribosomal protein uS9 family. (130 aa) |
| | STY3522 | Stringent starvation protein B; Orthologue of E. coli sspB (SSPB_ECOLI); Fasta hit to SSPB_ECOLI (165 aa), 89% identity in 167 aa overlap. (166 aa) |
| | STY3483 | 50S ribosomal subunit protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. (103 aa) |
| | STY3482 | 50S ribosomal subunit protein L27; Orthologue of E. coli rpmA (RL27_ECOLI); Fasta hit to RL27_ECOLI (84 aa), 95% identity in 84 aa overlap; Belongs to the bacterial ribosomal protein bL27 family. (85 aa) |
| | STY3468 | L factor; Participates in both transcription termination and antitermination. (500 aa) |
| | STY3467 | Protein chain initiation factor 2; One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. IF-2 subfamily. (892 aa) |
| | STY3464 | 30S ribosomal subunit protein S15; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA. (89 aa) |
| | STY3449 | Probable phosphoheptose isomerase; Required for the timely initiation of chromosomal replication via direct interactions with the DnaA initiator protein. Belongs to the SIS family. DiaA subfamily. (196 aa) |
| | STY3416 | Conserved hypothetical protein; Fasta hit to YHHW_ECOLI (231 aa), 35% identity in 237 aa overlap; Orthologue of E. coli yhaK (YHAK_ECOLI); Fasta hit to YHAK_ECOLI (233 aa), 85% identity in 233 aa overlap; Belongs to the pirin family. (233 aa) |
| | STY3413 | Conserved hypothetical protein; Orthologue of E. coli yqjG (YQJG_ECOLI); Fasta hit to YQJG_ECOLI (328 aa), 93% identity in 328 aa overlap. (328 aa) |
| | mug | G/U mismatch-specific DNA glycosylase; Excises ethenocytosine and uracil, which can arise by alkylation or deamination of cytosine, respectively, from the corresponding mispairs with guanine in ds-DNA. It is capable of hydrolyzing the carbon-nitrogen bond between the sugar-phosphate backbone of the DNA and the mispaired base. The complementary strand guanine functions in substrate recognition. Required for DNA damage lesion repair in stationary-phase cells; Belongs to the uracil-DNA glycosylase (UDG) superfamily. TDG/mug family. (168 aa) |
| | STY3389 | DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. (581 aa) |
| | STY3388 | 30S ribosomal subunit protein S21; Orthologue of E. coli rpsU (RS21_ECOLI); Fasta hit to RS21_ECOLI (70 aa), 100% identity in 70 aa overlap; Belongs to the bacterial ribosomal protein bS21 family. (71 aa) |
| | STY3311 | Possible transferase; Similar to several including: Escherichia coli protein yghU SW:YGHU_ECOLI (Q46845) (288 aa) fasta scores: E(): 0, 90.6% id in 287 aa and to Rhodococcus SPAD45 glutathione S-transferase IsoJ TR:Q9RBP3 (EMBL:AJ249207) (233 aa) fasta scores: E(): 5.5e-25, 40.7% id in 214 aa; Orthologue of E. coli YGHU_ECOLI; Fasta hit to YGHU_ECOLI (288 aa), 91% identity in 287 aa overlap. (288 aa) |
| | STY3296 | Hypothetical protein. (88 aa) |
| | STY3250 | Conserved hypothetical protein; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA. (138 aa) |
| | speA | Biosynthetic arginine decarboxylase; Catalyzes the biosynthesis of agmatine from arginine. (658 aa) |
| | STY3230 | Putative membrane protein; Similar to Lactococcus lactis hypothetical 21.5 kDa protein TR:Q9WW92 (EMBL:AF036485) (200 aa) fasta scores: E(): 1.9e-15, 30.5% id in 187 aa. Contains possible membrane spanning hydrophobic domains. (192 aa) |
| | STY3203 | Conserved hypothetical protein; An FAD assembly protein, which accelerates covalent attachment of the cofactor into other proteins. Plays an essential role in the assembly of succinate dehydrogenase (SDH, respiratory complex II), an enzyme complex that is a component of both the tricarboxylic acid cycle and the electron transport chain, and which couples the oxidation of succinate to fumarate with the reduction of ubiquinone (coenzyme Q) to ubiquinol. Required for flavinylation (covalent attachment of FAD) of the flavoprotein subunit SdhA of SDH and other flavinylated proteins as well. (88 aa) |
| | STY3157 | Diaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine. (420 aa) |
| | STY3133 | Protease III precursor (pitrilysin); Endopeptidase that degrades small peptides of less than 7 kDa, such as glucagon and insulin. (962 aa) |
| | STY3130 | N-acetylglutamate synthase; Orthologue of E. coli argA (ARGA_ECOLI); Fasta hit to ARGA_ECOLI (443 aa), 94% identity in 443 aa overlap; Belongs to the acetyltransferase family. ArgA subfamily. (443 aa) |
| | STY3077 | Highly similar to Escherichia coli putative 6-pyruvoyl tetrahydrobiopterin synthase YgcM SW:PTPS_ECOLI (Q46903) (121 aa) fasta scores: E(): 0, 94.2% id in 120 aa; Orthologue of E. coli PTPS_ECOLI; Fasta hit to PTPS_ECOLI (121 aa), 94% identity in 120 aa overlap. (120 aa) |
| | STY3046 | Possible decarboxylase; Involved in the non-oxidative decarboxylation and detoxification of phenolic derivatives. Flavin prenyltransferase that catalyzes the synthesis of the prenylated FMN cofactor (prenyl-FMN) for phenolic acid decarboxylase. (197 aa) |
| | spaT | Unknown function; Type III secretion-associated chaperone required for SipB and SipC stabilization. Prevents premature association of SipB with SipC, which may lead to their targeting for degradation. Along with InvF, required for transcription activation of sigDE (sopB pipC), sicAsipBCDA, and sopE (By similarity). (165 aa) |
| | STY2870 | DNA repair protein; May be involved in recombinational repair of damaged DNA. (553 aa) |
| | STY2863 | 30S ribosomal subunit protein S16; In addition to being a ribosomal protein, S16 also has a cation-dependent endonuclease activity. (82 aa) |
| | STY2860 | 50S ribosomal subunit protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site. (115 aa) |
| | STY2855 | Conserved hypothetical protein; Similar to eukaryotic regulacins e.g. Oryctolagus cuniculus regucalcin TR:Q9TTJ6 (EMBL:AB035445) (299 aa) fasta scores: E(): 1.2e-20, 29.3% id in 283 aa and Rattus norvegicus senescence marker protein-30 rgn or smp30 SW:SM30_RAT (Q03336) (299 aa) fasta scores: E(): 1.6e-20, 30.0% id in 280 aa. (302 aa) |
| | STY2853 | Putative sigma(54) modulation protein; Fasta hit to RP5M_ECOLI (95 aa), 40% identity in 96 aa overlap; Orthologue of E. coli yfiA (YFIA_ECOLI); Fasta hit to YFIA_ECOLI (112 aa), 92% identity in 111 aa overlap. (112 aa) |
| | STY2825 | DNA repair protein RecO; Involved in DNA repair and RecF pathway recombination. Belongs to the RecO family. (242 aa) |
| | STY2814 | Conserved hypothetical protein; Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2); Belongs to the cytidine and deoxycytidylate deaminase family. (183 aa) |
| | STY2781 | SseB protein; Orthologue of E. coli sseB (SSEB_ECOLI); Fasta hit to SSEB_ECOLI (261 aa), 89% identity in 261 aa overlap. (261 aa) |
| | STY2752 | Inosine-5'-monophosphate dehydrogenase; Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth. Belongs to the IMPDH/GMPR family. (490 aa) |
| | STY2737 | Conserved hypothetical protein; Mediates the interaction of DNA replication initiator protein DnaA with DNA polymerase subunit beta sliding clamp (dnaN). Stimulates hydrolysis of ATP-DnaA to ADP-DnaA, rendering DnaA inactive for reinitiation, a process called regulatory inhibition of DnaA or RIDA (By similarity); Belongs to the DnaA family. HdA subfamily. (241 aa) |
| | STY2723 | Conserved hypothetical protein; Catalyzes the formation of N(4)-acetylcytidine (ac(4)C) at the wobble position of tRNA(Met), by using acetyl-CoA as an acetyl donor and ATP (or GTP). (671 aa) |
| | eutS | Putative ethanolamine utilization protein EutS; May be involved in the formation of a specific microcompartment in the cell in which the metabolism of potentially toxic by-products takes place; Belongs to the EutS/PduU family. (111 aa) |
| | STY2705 | Similar to Salmonella typhimurium LT2 ethanolamine utilization protein EutP eutP SW:EUTP_SALTY (Q9ZFV6) (159 aa) fasta scores: E(): 0, 100.0% id in 159 aa and to Salmonella typhimurium propanediol utilization protein PduV pduV SW:PDUV_SALTY (Q9XDM6) (150 aa) fasta scores: E(): 4.1e-07, 30.1% id in 143 aa; Orthologue of E. coli EUTP_ECOLI; Fasta hit to EUTP_ECOLI (159 aa), 85% identity in 159 aa overlap. (159 aa) |
| | STY2704 | Similar to Salmonella typhimurium LT2 ethanolamine utilization protein EutQ eutQ SW:EUTQ_SALTY (Q9ZFV5) (229 aa) fasta scores: E(): 0, 99.1% id in 229 aa; Orthologue of E. coli EUTQ_ECOLI; Fasta hit to EUTQ_ECOLI (233 aa), 87% identity in 233 aa overlap. (229 aa) |
| | STY2703 | Putative cobalamin adenosyltransferase; Similar to Salmonella typhimurium ethanolamine utilization cobalamin adenosyltransferase SW:EUTT_SALTY (Q9ZFV4) (267 aa) fasta scores: E(): 0, 98.9% id in 267 aa; Orthologue of E. coli EUTT_ECOLI; Fasta hit to EUTT_ECOLI (267 aa), 88% identity in 265 aa overlap. (265 aa) |
| | eutN | Identical, at the C-terminus, to Salmonella typhimurium ethanolamine utilization protein EutN eutN or cchB SW:EUTN_SALTY (P41792) (99 aa) fasta scores: E(): 0, 100.0% id in 99 aa. Similar, at the C-terminus, to Escherichia coli ethanolamine utilization protein EutN eutN SW:EUTN_ECOLI (P77633) (95 aa) fasta scores: E(): 1.4e-31, 91.6% id in 95 aa. (229 aa) |
| | STY2700 | Putative aldehyde dehydrogenase; Similar to Salmonella typhimurium ethanolamine utilization protein EutE eutE SW:EUTE_SALTY (P41793) (467 aa) fasta scores: E(): 0, 99.4% id in 467 aa; Orthologue of E. coli eutE (EUTE_ECOLI); Fasta hit to EUTE_ECOLI (467 aa), 94% identity in 467 aa overlap. (467 aa) |
| | eutG | Putative alchohol dehydrogenase; Similar to Escherichia coli ethanolamine utilization protein EutG eutG SW:EUTG_ECOLI (P76553) (395 aa) fasta scores: E(): 0, 86.0% id in 394 aa and Salmonella typhimurium ethanolamine utilization protein EutG eutG SW:EUTG_SALTY (P41795) (391 aa) fasta scores: E(): 0, 93.4% id in 395 aa. (395 aa) |
| | eutA | Similar to Salmonella typhimurium ethanolamine utilization protein EutA eutA SW:EUTA_SALTY (Q9ZFV2) (467 aa) fasta scores: E(): 0, 99.1% id in 467 aa; Orthologue of E. coli EUTA_ECOLI; Fasta hit to EUTA_ECOLI (467 aa), 90% identity in 467 aa overlap. Shares a region of similarity with EutJ and DnaK/FtsA. (467 aa) |
| | eutB | Similar to Salmonella typhimurium ethanolamine ammonia-lyase heavy chain SW:EUTB_SALTY (P19264) (453 aa) fasta scores: E(): 0, 99.8% id in 453 aa; Orthologue of E. coli eutB (EUTB_ECOLI); Fasta hit to EUTB_ECOLI (453 aa), 98% identity in 453 aa overlap. (453 aa) |
| | eutC | Similar to Salmonella typhimurium ethanolamine ammonia-lyase light chain eutC SW:EUTC_SALTY (P19265) (298 aa) fasta scores: E(): 0, 99.3% id in 298 aa; Orthologue of E. coli eutC (EUTC_ECOLI); Fasta hit to EUTC_ECOLI (295 aa), 91% identity in 298 aa overlap; Belongs to the EutC family. (298 aa) |
| | eutL | Ethanolamine utilization protein EutL; May be involved in the formation of a specific microcompartment in the cell in which the metabolism of potentially toxic by-products takes place; Belongs to the EutL/PduB family. (219 aa) |
| | eutK | Similar to Escherichia coli ethanolamine utilization protein EutK precursor eutK SW:EUTK_ECOLI (P76540) (166 aa) fasta scores: E(): 0, 79.9% id in 164 aa and Salmonella typhimurium ethanolamine utilization protein EutK precursor eutK SW:EUTK_SALTY (Q9ZFU8) (164 aa) fasta scores: E(): 0, 97.6% id in 164 aa. The N-terminal approx 100 aa is similar to Salmonella typhimurium propanediol utilization protein PduA which has been implicated in polyhedral body formation which may protect the cell from toxic metabolites. (164 aa) |
| | STY0949 | Putative pirin-related protein; Similar to Lycopersicon esculentum pirin TR:Q9SEE4 (EMBL:AF154003) (291 aa) fasta scores: E(): 2.8e-31, 38.2% id in 272 aa, and to Arabidopsis thaliana putative pirin f11f12.9 TR:Q9LPS9 (EMBL:AC012561) (310 aa) fasta scores: E(): 2e-27, 37.0% id in 262 aa, and to Homo sapiens pirin TR:O00625 (EMBL:Y07868) (290 aa) fasta scores: E(): 4e-27, 34.0% id in 291 aa, and to Pseudomonas aeruginosa hypothetical 31.6 kDa protein PA2418 TR:AAG05806 (EMBL:AE004669) (286 aa) fasta scores: E(): 0, 59.4% id in 283 aa. (286 aa) |
| | STY0960 | Conserevd hypothetical protein; Orthologue of E. coli ycaJ (YCAJ_ECOLI); Fasta hit to YCAJ_ECOLI (447 aa), 97% identity in 447 aa overlap. (447 aa) |
| | STY2599 | tRNA pseudouridine synthase A; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs. (270 aa) |
| | STY0981 | 30S ribosomal protein S1; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence. (557 aa) |
| | STY0982 | Integration host factor beta-subunit (IHF-beta); This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control. Belongs to the bacterial histone-like protein family. (94 aa) |
| | STY0991 | Conserved hypothetical protein; Orthologue of E. coli P75845; Fasta hit to P75845 (297 aa), 91% identity in 297 aa overlap. (297 aa) |
| | STY1022 | Similar to the N-terminus of Bacteriophage phi-80 replication protein 15 SW:VG15_BPPH8 (P14815) fasta scores: E(): 8.6e-18, 36.6% id in 227 aa and to Salmonella typhimurium hypothetical 36.5 kda protein TR:O84892 (EMBL:AF001386) fasta scores: E(): 0, 99.7% id in 325 aa. (327 aa) |
| | STY1023 | Similar to several including: Escherichia coli DNA replication protein DnaC or DnaD SW:DNAC_ECOLI (P07905) (245 aa) fasta scores: E(): 0, 48.8% id in 244 aa, Streptococcus thermophilus bacteriophage 7201 Orf5 TR:AAF26604 (EMBL:AF145054) (260 aa) fasta scores: E(): 5.1e-06, 23.3% id in 193 aa and Salmonella typhimurium hypothetical 27.6 kda protein TR:O84893 (EMBL:AF001386) fasta scores: E(): 0, 100.0% id in 249 aa; Fasta hit to DNAC_ECOLI (245 aa), 49% identity in 244 aa overlap; Paralogue of E. coli P77546; Fasta hit to P77546 (248 aa), 55% identity in 249 aa overlap. (249 aa) |
| | STY1090 | Conserved hypothetical protein; Required for spatial organization of the terminus region of the chromosome (Ter macrodomain) during the cell cycle. Prevents early segregation of duplicated Ter macrodomains during cell division. Binds specifically to matS, which is a 13 bp signature motif repeated within the Ter macrodomain. (150 aa) |
| | STY2586 | Putative decarboxylase; Flavin prenyltransferase that catalyzes the synthesis of the prenylated FMN cofactor (prenyl-FMN) for 4-hydroxy-3-polyprenylbenzoic acid decarboxylase UbiD. The prenyltransferase is metal-independent and links a dimethylallyl moiety from dimethylallyl monophosphate (DMAP) to the flavin N5 and C6 atoms of FMN. (189 aa) |
| | STY2580 | Conserved hypothetical protein; Orthologue of E. coli YFCH_ECOLI; Fasta hit to YFCH_ECOLI (297 aa), 87% identity in 297 aa overlap. (297 aa) |
| | STY2579 | Putative glutathione-S transferase; Similar to Rhodococcus SPAD45 glutathione S-transferase isoJ TR:Q9RBP3 (EMBL:AJ249207) (233 aa) fasta scores: E(): 0, 49.8% id in 203 aa; Orthologue of E. coli YFCG_ECOLI; Fasta hit to YFCG_ECOLI (215 aa), 83% identity in 208 aa overlap. (215 aa) |
| | STY2571 | Similar to the N-terminal halves of transketolases e.g. Mus musculus transketolase tkt SW:TKT_MOUSE (P40142) (623 aa) fasta scores: E(): 5.6e-24, 33.0% id in 267 aa. (276 aa) |
| | STY2544 | Putative hydrolase; Zinc phosphodiesterase, which has both exoribonuclease and endoribonuclease activities. (305 aa) |
| | STY2543 | Conserved hypothetical protein; Orthologue of E. coli ELAA_ECOLI; Fasta hit to ELAA_ECOLI (153 aa), 80% identity in 153 aa overlap. (153 aa) |
| | menF | Isochorismate synthase; Catalyzes the conversion of chorismate to isochorismate. (431 aa) |
| | STY2490 | AlkB protein; Orthologue of E. coli alkB (ALKB_ECOLI); Fasta hit to ALKB_ECOLI (216 aa), 80% identity in 216 aa overlap. (216 aa) |
| | STY2461 | 50s ribosomal protein L25; This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance. Belongs to the bacterial ribosomal protein bL25 family. (94 aa) |
| | STY1094 | Conserved hypothetical protein; Orthologue of E. coli YCCR_ECOLI; Fasta hit to YCCR_ECOLI (209 aa), 75% identity in 199 aa overlap. (201 aa) |
| | pipD | Putative secreted peptidase; Similar to Salmonella dublin dipeptidase homolog PipD TR:O85304 (EMBL:AF060858) fasta scores: E(): 0, 94.3% id in 407 aa and to Lactobacillus helveticus dipeptidase PepD TR:Q48558 (EMBL:U34257) fasta scores: E(): 0, 28.9% id in 474 aa. (489 aa) |
| | hpaG | Similar to Escherichia coli 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase [includes: 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase hpaG SW:HPAG_ECOLI (Q46978) fasta scores: E(): 0, 84.0% id in 430 aa. (429 aa) |
| | STY1143 | Hypothetical protein; No significant database matches. (312 aa) |
| | STY1157 | Putative transcriptional regulator; Orthologue of E. coli YCDC_ECOLI; Fasta hit to YCDC_ECOLI (212 aa), 83% identity in 212 aa overlap. (212 aa) |
| | STY1230 | 50S ribosomal protein L32; Orthologue of E. coli rpmF (RL32_ECOLI); Fasta hit to RL32_ECOLI (56 aa), 100% identity in 56 aa overlap; Belongs to the bacterial ribosomal protein bL32 family. (57 aa) |
| | STY1253 | Similar to Streptomyces coelicolor putative tetR-family protein SC7E4.35 TR:CAB94623 (EMBL:AL359214) (214 aa) fasta scores: E(): 2.5e-23, 35.5% id in 200 aa; Fasta hit to YJGJ_ECOLI (197 aa), 33% identity in 188 aa overlap; Orthologue of E. coli YCFQ_ECOLI; Fasta hit to YCFQ_ECOLI (210 aa), 80% identity in 210 aa overlap. (211 aa) |
| | cobB | Putative regulatory protein; NAD-dependent lysine deacetylase and desuccinylase that specifically removes acetyl and succinyl groups on target proteins. Modulates the activities of several proteins which are inactive in their acylated form. (237 aa) |
| | STY1296 | Conserved hypothetical protein; Similar to Erwinia carotovora subspcarotovora. ExpL protein expL TR:O86196 (EMBL:AJ224437) (303 aa) fasta scores: E(): 0, 64.8% id in 301 aa; Orthologue of E. coli ychK (YCHK_ECOLI); Fasta hit to YCHK_ECOLI (314 aa), 83% identity in 301 aa overlap. (301 aa) |
| | STY1315 | Putative acyl-coA hydrolase; Catalyzes the hydrolysis of the thioester bond in palmitoyl- CoA and malonyl-CoA. (133 aa) |
| | STY1390 | Similar to Escherichia coli hypothetical transcriptional regulator in ndh-mfd intergenic region ycfQ SW:YCFQ_ECOLI (P75952) (210 aa) fasta scores: E(): 1.3e-07, 29.8% id in 205 aa; Orthologue of E. coli YJGJ_ECOLI; Fasta hit to YJGJ_ECOLI (197 aa), 55% identity in 196 aa overlap. (196 aa) |
| | STY1405 | O6-methylguanine-DNA-alkyltransferase; Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction: the enzyme is irreversibly inactivated. (171 aa) |
| | STY1413 | Hypothetical protein; No significant database matches. (519 aa) |
| | STY1426 | Hypothetical protein; No significant database matches. (149 aa) |
| | STY1495 | 30S ribosomal protein S22; Although this protein associates with the 30S subunit of the ribosome it is not considered to be a bona fide ribosomal protein. Belongs to the SRA family. (47 aa) |
| | STY1622 | Similar to Haemophilus influenzae hypothetical protein Hi1508 SW:YF08_HAEIN (P44230) (141 aa) fasta scores: E(): 0.0041, 27.5% id in 102 aa. (148 aa) |
| | STY1665 | Putative NADH reducing dehydrogenase; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Required to maintain the reduced state of SoxR; Belongs to the 4Fe4S bacterial-type ferredoxin family. RnfC subfamily. (673 aa) |
| | STY1669 | Endonuclease III; DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N-glycosidic bond, leaving an AP (apurinic/apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'- phosphate. (211 aa) |
| | sscB | Putative pathogenicity island protein; Similar to Salmonella typhimurium SscB TR:O84950 (EMBL:AF020808) (144 aa) fasta scores: E(): 0, 99.3% id in 142 aa. (144 aa) |
| | ppsA | Phosphoenolpyruvate synthase; Catalyzes the phosphorylation of pyruvate to phosphoenolpyruvate; Belongs to the PEP-utilizing enzyme family. (792 aa) |
| | STY1765 | Conserved hypothetical protein; Catalyzes the transfer of adenosine 5'-monophosphate (AMP) to Ser, Thr or Tyr residues of target proteins (AMPylation). (480 aa) |
| | STY1771 | Integration host factor alpha-subunit; This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control. (99 aa) |
| | STY1775 | 50S ribosomal subunit protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit (By similarity). (118 aa) |
| | STY1776 | 50S ribosomal subunit protein L35; Orthologue of E. coli rpmI (RL35_ECOLI); Fasta hit to RL35_ECOLI (64 aa), 100% identity in 64 aa overlap; Belongs to the bacterial ribosomal protein bL35 family. (65 aa) |
| | STY1816 | DNA topoisomerase III; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA su [...] (649 aa) |
| | STY1902 | glutamyl-tRNA reductase; Catalyzes the NADPH-dependent reduction of glutamyl-tRNA(Glu) to glutamate 1-semialdehyde (GSA). (418 aa) |
| | ipk | Isopentenyl monophosphate kinase; Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol; Belongs to the GHMP kinase family. IspE subfamily. (283 aa) |
| | STY1910 | Putative ATP/GTP-binding protein; ATPase that binds to both the 70S ribosome and the 50S ribosomal subunit in a nucleotide-independent manner. (363 aa) |
| | STY1942 | Putative hydrolase; Similar to Escherichia coli protein YcgM SW:YCGM_ECOLI (P76004) (219 aa) fasta scores: E(): 0, 84.9% id in 219 aa, and to Arabidopsis thaliana isomerase like protein dl4011w or at4g15940 TR:O23443 (EMBL:Z97340) (222 aa) fasta scores: E(): 1.8e-30, 46.2% id in 195 aa. (219 aa) |
| | STY1951 | Similar to Escherichia coli probable ATP-dependent helicase YoaA SW:YOAA_ECOLI (P76257) (636 aa) fasta scores: E(): 0, 95.1% id in 635 aa, and to Haemophilus influenzae probable ATP-dependent helicase Hi0387 SW:YOAA_HAEIN (P44680) (640 aa) fasta scores: E(): 0, 62.4% id in 633 aa, and to Streptomyces coelicolor putative ATP-dependent helicase SC4H2.23 TR:O69978 (EMBL:AL022268) (664 aa) fasta scores: E(): 2.1e-32, 33.6% id in 660 aa. (636 aa) |
| | STY2062 | Similar to several including: Escherichia coli DNA replication protein DnaC or dnaD SW:DNAC_ECOLI (P07905) (245 aa) fasta scores: E(): 0, 49.2% id in 242 aa, Streptococcus thermophilus bacteriophage 7201 Orf5 TR:AAF26604 (EMBL:AF145054) (260 aa) fasta scores: E(): 6.3e-06, 23.3% id in 189 aa and Salmonella typhimurium hypothetical protein TR:O84893 (EMBL:AF001386) (249 aa) fasta scores: E(): 0, 56.6% id in 249 aa; Fasta hit to DNAC_ECOLI (245 aa), 49% identity in 242 aa overlap; Orthologue of E. coli P77546; Fasta hit to P77546 (248 aa), 96% identity in 248 aa overlap. (248 aa) |
| | STY2063 | Conserved hypothetical protein; C-terminus shows similarity to C-termini of Escherichia coli hypothetical protein YdaU SW:YDAU_ECOLI (P76065) (285 aa) fasta scores: E(): 0, 63.1% id in 179 aa and Salmonella typhimurium hypothetical protein TR:O84892 (EMBL:AF001386) (325 aa) fasta scores: E(): 8.6e-16, 34.7% id in 199 aa. (262 aa) |
| | STY2082 | DNA polymerase III, theta subunit; Orthologue of E. coli holE (HOLE_ECOLI); Fasta hit to HOLE_ECOLI (76 aa), 88% identity in 76 aa overlap. (76 aa) |
| | STY2093 | 6-phosphogluconate dehydratase; Catalyzes the dehydration of 6-phospho-D-gluconate to 2- dehydro-3-deoxy-6-phospho-D-gluconate; Belongs to the IlvD/Edd family. (603 aa) |
| | STY2115 | Putative copper homeostasis protein; Participates in the control of copper homeostasis. (259 aa) |
| | pduA | Similar to Salmonella typhimurium propanediol utilization protein PduA pduA SW:PDUA_SALTY (P37448) (97 aa) fasta scores: E(): 5.7e-31, 100.0% id in 90 aa and identical to Salmonella enterica serovar Typhimurium PduA pduA TR:AAB84107 (EMBL:AF026270) (94 aa) fasta scores: E(): 1.1e-32, 100.0% id in 94 aa. S. typhi pduA is probably not essential for propanediol catabolism (by similarity), but may be involved (cf. homologue in the eut operon). The Salmonella enterica homologue has been implicated in polyhedral body formation which may protect the cell from toxic metabolites, or protect the [...] (94 aa) |
| | pduB | Similar to Salmonella typhimurium propanediol utilization protein PduB pduB SW:PDUB_SALTY (P37449) (233 aa) fasta scores: E(): 0, 99.1% id in 233 aa. S. typhi pduB is probably not essential for propanediol catabolism (by similarity), but may be involved (cf. homologue in the eut operon). The Salmonella enterica homologue has been implicated in polyhedral body formation which may protect the cell from toxic metabolites, or protect the dehydratase from oxygen. (233 aa) |
| | STY0018 | Putative chitinase; Similar to Glossina morsitans S-endosymbiont exochitinase TR:O52863 (EMBL:Y11391) fasta scores: E(): 0, 47.3% id in 704 aa, and to Aeromonas hydrophila extracellular chitinase chia CHIA TR:AAF70180 (EMBL:AF251793) fasta scores: E(): 1.7e-22, 28.3% id in 637 aa, and to Serratia marcescens chitinase a precursor CHIA SW:CHIA_SERMA (P07254; Q54275) fasta scores: E(): 5e-21, 28.2% id in 478 aa. (699 aa) |
| | STY0052 | 30S ribosomal protein S20; Binds directly to 16S ribosomal RNA. (87 aa) |
| | ribF | Similar to Escherichia coli riboflavin biosynthesis protein RibF [includes: riboflavin kinase; FMN adenylyltransferase] RIBF SW:RIBF_ECOLI (P08391; P75621) fasta scores: E(): 0, 90.0% id in 309 aa, and to Pseudomonas fluorescens riboflavin biosynthesis protein ribf [includes: riboflavin kinase; FMN adenylyltransferase] RIBF SW:RIBF_PSEFL (P22990) fasta scores: E(): 0, 52.6% id in 304 aa; Orthologue of E. coli yaaC (RIBF_ECOLI); Fasta hit to RIBF_ECOLI (313 aa), 90% identity in 309 aa overlap. (312 aa) |
| | STY0082 | L-carnitine dehydratase; Catalyzes the reversible transfer of the CoA moiety from gamma-butyrobetainyl-CoA to L-carnitine to generate L-carnitinyl-CoA and gamma-butyrobetaine. Is also able to catalyze the reversible transfer of the CoA moiety from gamma-butyrobetainyl-CoA or L- carnitinyl-CoA to crotonobetaine to generate crotonobetainyl-CoA (By similarity); Belongs to the CoA-transferase III family. CaiB subfamily. (405 aa) |
| | STY0083 | Probable carnitine operon oxidoreductase CaiA; Catalyzes the reduction of crotonobetainyl-CoA to gamma- butyrobetainyl-CoA; Belongs to the acyl-CoA dehydrogenase family. (380 aa) |
| | STY0085 | FixA protein; Required for anaerobic carnitine reduction. May bring reductant to CaiA. (256 aa) |
| | STY0086 | FixB protein; Required for anaerobic carnitine reduction. May bring reductant to CaiA. (313 aa) |
| | STY0087 | FixC protein; Could be part of an electron transfer system required for anaerobic carnitine reduction; Belongs to the ETF-QO/FixC family. (428 aa) |
| | STY0088 | Ferredoxin like protein FixX; Could be part of an electron transfer system required for anaerobic carnitine reduction. Could be a 3Fe-4S cluster-containing protein (By similarity). (95 aa) |
| | STY0104 | CorD protein; Similar to Salmonella typhimurium ApaG protein SW:APAG_SALTY (Q56017) fasta scores: E(): 0, 97.6% id in 125 aa, and to Escherichia coli ApaG protein APAG SW:APAG_ECOLI (P05636) fasta scores: E(): 0, 92.8% id in 125 aa, and to C-terminus of Homo sapiens f-box protein fbx3 TR:Q9UK99 (EMBL:AF176702) fasta scores: E(): 2.1e-09, 35.8% id in 123 aa. (125 aa) |
| | STY0112 | DNA polymerase II; Orthologue of E. coli polB (DPO2_ECOLI); Fasta hit to DPO2_ECOLI (782 aa), 90% identity in 782 aa overlap. (783 aa) |
| | STY0115 | Putative IS element transposase; Similar to Bacteriophage If1 orf348 TR:O80301 (EMBL:U02303) fasta scores: E(): 0, 90.4% id in 334 aa, and to Saccharopolyspora erythraea orf425 ERYA TR:Q54132 (EMBL:L07626) fasta scores: E(): 0, 36.0% id in 403 aa, and to Thermotoga maritima transposase, is605-tnpb family TM1044 TR:Q9X0D4 (EMBL:AE001764) fasta scores: E(): 1.6e-29, 34.1% id in 410 aa; Fasta hit to P76102 (402 aa), 64% identity in 391 aa overlap. (402 aa) |
| | STY0208 | 2-amino-4-hydroxy-6- hydroxymethyldihydropteridinepyrophosphokinase; Orthologue of E. coli folK (HPPK_ECOLI); Fasta hit to HPPK_ECOLI (158 aa), 82% identity in 158 aa overlap. (159 aa) |
| | STY0239 | 30S ribosomal protein S2; Orthologue of E. coli rpsB (RS2_ECOLI); Fasta hit to RS2_ECOLI (240 aa), 98% identity in 240 aa overlap; Belongs to the universal ribosomal protein uS2 family. (241 aa) |
| | STY0254 | DNA polymerase III, alpha chain; Orthologue of E. coli dnaE (DP3A_ECOLI); Fasta hit to DP3A_ECOLI (1160 aa), 97% identity in 1160 aa overlap. (1160 aa) |
| | STY0284 | Ribonuclease H; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids. (155 aa) |
| | STY0285 | DNA polymerase III epsilon subunit; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contains the editing function and is a proofreading 3'- 5' exonuclease (By similarity). (243 aa) |
| | STY0353 | Possible hydrolase; Similar to many hypothetical proteins e.g. Escherichia coli hypothetical protein in agr operon TR:Q9R2E1 (EMBL:D83536) (259 aa) fasta scores: E(): 0, 82.0% id in 255 aa, and to Bacillus subtilis YkrU protein ykrU TR:O31664 (EMBL:Z99111) (259 aa) fasta scores: E(): 4.3e-25, 32.7% id in 251 aa; Orthologue of E. coli YAFV_ECOLI; Fasta hit to YAFV_ECOLI (256 aa), 82% identity in 253 aa overlap. (255 aa) |
| | prpB | Putative carboxyvinyl-carboxyphosphonate phosphorylmutase; Catalyzes the thermodynamically favored C-C bond cleavage of (2R,3S)-2-methylisocitrate to yield pyruvate and succinate. Belongs to the isocitrate lyase/PEP mutase superfamily. Methylisocitrate lyase family. (295 aa) |
| | STY0430 | Exonuclease SbcD; SbcCD cleaves DNA hairpin structures. These structures can inhibit DNA replication and are intermediates in certain DNA recombination reactions. The complex acts as a 3'->5' double strand exonuclease that can open hairpins. It also has a 5' single-strand endonuclease activity; Belongs to the SbcD family. (400 aa) |
| | phnW | 2-aminoethylphosphonate:pyruvate aminotransferase; Involved in phosphonate degradation; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. PhnW subfamily. (367 aa) |
| | STY0493 | DNA-binding protein HU-beta; Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions; Belongs to the bacterial histone-like protein family. (90 aa) |
| | ybaZ | Putative methylated-DNA methyltransferase; Similar to Escherichia coli hypothetical 14.4 kDa protein in tesb-hha intergenic region ybaZ SW:YBAZ_ECOLI (P75707) (129 aa) fasta scores: E(): 0, 82.9% id in 129 aa, and to Mycobacterium tuberculosis methylated-DNA--protein-cysteine methyltransferase ogt or rv1316c or mtcy130.01C SW:OGT_MYCTU (Q10627) (165 aa) fasta scores: E(): 7.4e-06, 36.5% id in 104 aa. (129 aa) |
| | rpmE2 | Putative 50s ribosomal protein L31 (second copy); Similar to Escherichia coli hypothetical 9.9 kDa protein in intf-eaeh intergenic region ykgM SW:YKGM_ECOLI (P71302) (87 aa) fasta scores: E(): 1.6e-27, 74.4% id in 86 aa, and to Listeria monocytogenes 50s ribosomal protein l31 rpmE SW:RL31_LISMO (Q9ZH28) (81 aa) fasta scores: E(): 7.9e-12, 48.1% id in 79 aa, and to Borrelia burgdorferi 50s ribosomal protein l31 rpme or bb0229 SW:RL31_BORBU (O51247) (81 aa) fasta scores: E(): 7.8e-11, 43.6% id in 78 aa; Fasta hit to RL31_ECOLI (70 aa), 33% identity in 84 aa overlap; Orthologue of E. coli [...] (86 aa) |
| | STY0513 | Similar to Guillardia theta chloroplast 50s ribosomal protein l36 rpl36 SW:RK36_GUITH (P28528; O46911) (48 aa) fasta scores: E(): 1.6e-09, 56.5% id in 46 aa, and to Rickettsia prowazekii 50s ribosomal protein l36 rpmj or rp456 SW:RL36_RICPR (Q9ZD87) (41 aa) fasta scores: E(): 4.9e-08, 56.1% id in 41 aa. (46 aa) |
| | STY0528 | DNA polymerase III subunits gamma and tau; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. (642 aa) |
| | STY0529 | Conserved hypothetical protein; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection. (109 aa) |
| | STY0530 | Recombination protein RecR; May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO. (201 aa) |
| | STY0533 | Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX. (320 aa) |
| | aes | Acetyl esterase; Displays esterase activity towards short chain fatty esters (acyl chain length of up to 8 carbons). Able to hydrolyze triacetylglycerol (triacetin) and tributyrylglycerol (tributyrin), but not trioleylglycerol (triolein) or cholesterol oleate. Negatively regulates MalT activity by antagonizing maltotriose binding. Inhibits MelA galactosidase activity. (323 aa) |
| | ybbO | Similar to Escherichia coli hypothetical oxidoreductase in usha-tesa intergenic region ybbO SW:YBBO_ECOLI (P77388) (269 aa) fasta scores: E(): 0, 91.0% id in 255 aa, and to Homo sapiens 11-cis retinol dehydrogenase SW:RDH1_HUMAN () (318 aa) fasta scores: E(): 2.4e-21, 32.7% id in 278 aa; Orthologue of E. coli YBBO_ECOLI; Fasta hit to YBBO_ECOLI (269 aa), 91% identity in 255 aa overlap. (256 aa) |
| | allC | Similar to Escherichia coli allantoate amidohydrolase allc or glxb7 SW:ALLC_ECOLI (P77425) (411 aa) fasta scores: E(): 0, 88.1% id in 411 aa, and to Bacillus subtilis probable allantoate amidohydrolase yurH SW:ALLC_BACSU (O32149) (412 aa) fasta scores: E(): 0, 47.8% id in 404 aa; Orthologue of E. coli YLBB_ECOLI; Fasta hit to YLBB_ECOLI (411 aa), 88% identity in 411 aa overlap. (411 aa) |
| | STY0622 | Similar to Aquifex aeolicus transcriptional regulator acrr2 TR:O67927 (EMBL:AE000776) (192 aa) fasta scores: E(): 0.00033, 26.7% id in 101 aa, and to Bacillus megaterium transcriptional repressor Bm3r1 bm3r1 SW:BM3R_BACME (P43506) (192 aa) fasta scores: E(): 0.0035, 22.2% id in 189 aa. (193 aa) |
| | STY0639 | Isochorismate synthase EntC; Orthologue of E. coli entC (ENTC_ECOLI); Fasta hit to ENTC_ECOLI (391 aa), 85% identity in 388 aa overlap. (389 aa) |
| | pduC | Similar to Salmonella typhimurium glycerol dehydratase large subunit pduC SW:DHAB_SALTY (P37450) (554 aa) fasta scores: E(): 0, 99.6% id in 554 aa and Klebsiella oxytoca diol dehydratase alpha subunit pddA TR:Q59470 (EMBL:D45071) (554 aa) fasta scores: E(): 0, 99.6% id in 554 aa. (554 aa) |
| | STY0696 | Conserved hypothetical protein; Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD). (213 aa) |
| | STY0714 | Conserved hypothetical protein; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA. (157 aa) |
| | STY0723 | Pts system, N-acetylglucosamine-specific IIABC component; Orthologue of E. coli nagE (PTAA_ECOLI); Fasta hit to PTAA_ECOLI (648 aa), 93% identity in 648 aa overlap. (650 aa) |
| | STY0827 | Biotin synthetase; Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical-based mechanism; Belongs to the radical SAM superfamily. Biotin synthase family. (346 aa) |
| | ybiI | Similar to Escherichia coli hypothetical 9.8 kDa protein in ding-glnq intergenic region ybiI SW:YBII_ECOLI (P41039) (88 aa) fasta scores: E(): 9.9e-31, 80.7% id in 88 aa, and to Escherichia coli Plasmid F TraR protein traR SW:TRAR_ECOLI (P41065) (73 aa) fasta scores: E(): 1.7e-06, 47.5% id in 61 aa; Orthologue of E. coli ybiI (YBII_ECOLI); Fasta hit to YBII_ECOLI (88 aa), 81% identity in 88 aa overlap. (88 aa) |
| | STY0880 | Conserved hypothetical protein; Orthologue of E. coli YBIU_ECOLI; Fasta hit to YBIU_ECOLI (421 aa), 85% identity in 421 aa overlap. (421 aa) |
| | STY2590 | Similar to Bacillus methanolicus diaminopimelate decarboxylase lysA SW:DCDA_BACMT (P41023) (432 aa) fasta scores: E(): 4.8e-21, 28.3% id in 438 aa and to many putative diaminopimelate decarboxylases. (465 aa) |
| | dnaT | Primosomal protein I; This protein is required for primosome-dependent normal DNA replication; it is also involved in inducing stable DNA replication during SOS response. It forms, in concert with DnaB protein and other prepriming proteins DnaC, N, N', N'' a prepriming protein complex on the specific site of the template DNA recognized by protein N'. (179 aa) |
| | dnaC | Similar to Escherichia coli DNA replication protein DnaC dnaC or dnaD SW:DNAC_ECOLI (P07905) (245 aa) fasta scores: E(): 0, 93.5% id in 245 aa. (245 aa) |
| | mrr | Similar to Escherichia coli mrr restriction system protein Mrr SW:MRR_ECOLI (P24202) (304 aa) fasta scores: E(): 0, 77.3% id in 304 aa. (304 aa) |
| | STY4832 | Similar to Bacteriophage P4 putative P4-specific DNA primase alpha SW:PRIM_BPP4 (P10277) (777 aa) fasta scores: E(): 0, 86.2% id in 774 aa, and to Haemophilus influenzae phage phi-R73 primase-like protein TR:AAF27348 (EMBL:Q9L8P2) (589 aa) fasta scores: E(): 0, 37.5% id in 432 aa. (777 aa) |
| | STY4823 | Protein kinase; Similar to the N-terminus of Myxococcus xanthus putative developmental regulator Pkn10 TR:Q9S476 (EMBL:AF159502) (600 aa) fasta scores: E(): 2.7e-12, 32.1% id in 234 aa and to Staphylococcus aureus protein kinase PknB, ORF388 TR:CAA73979 (EMBL:Y13639) (388 aa) fasta scores: E(): 4.7e-13, 27.6% id in 304 aa. CDS DNA has a low GC content, 34.91%. However, more similar in size and structure to the Eukaryotic kinases e.g. Mus musculus mitogen-activated protein kinase 14 MapK14 SW:MK14_MOUSE (P47811) (360 aa) fasta scores: E(): 1.1e-10, 28.8% id in 288 aa. (357 aa) |
| | STY4812 | Putative acetyltransferase; Similar to Salmonella typhimurium hypothetical 18.3 kDa protein in miaE 3'region yYgM SW:YJGM_SALTY (Q08021) (167 aa) fasta scores: E(): 0, 99.4% id in 167 aa, and to Azospirillum brasilense IAA acetyltransferase SW:IAAT_AZOBR (P26945) (153 aa) fasta scores: E(): 3.3e-05, 27.3% id in 161 aa. (171 aa) |
| | mgtA | Mg(2+) transport ATPase, P-type; Similar to Salmonella typhimurium Mg2+ transport ATPase MgtA mgtA SW:ATMA_SALTY (P36640) (902 aa) fasta scores: E(): 0, 99.2% id in 902 aa, and to Escherichia coli mg mgta or mgt or corB SW:ATMA_ECOLI (P39168) (898 aa) fasta scores: E(): 0, 90.4% id in 896 aa. (902 aa) |
| | rplI | 50s ribosomal subunit protein L9; Binds to the 23S rRNA. (149 aa) |
| | rpsR | 30s ribosomal subunit protein S18; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family. (75 aa) |
| | priB | Primosomal replication protein N; Binds single-stranded DNA at the primosome assembly site (PAS). During primosome assembly it facilitates the complex formation between PriA and DnaT; Belongs to the PriB family. (104 aa) |
| | rpsF | 30s ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA. (131 aa) |
| | yjfR | Conserved hypothetical protein; Probably catalyzes the hydrolysis of L-ascorbate-6-P into 3- keto-L-gulonate-6-P. Is essential for L-ascorbate utilization under anaerobic conditions; Belongs to the UlaG family. (354 aa) |
| | aidB | Probable acyl Co-A dehydrogenase; Similar to Escherichia coli AidB protein SW:AIDB_ECOLI (P33224) (546 aa) fasta scores: E(): 0, 85.2% id in 539 aa and to Streptomyces coelicolor putative oxidoreductase 2scg38.05 TR:CAC13064 (EMBL:AL445503) (567 aa) fasta scores: E(): 0, 44.2% id in 545 aa. (540 aa) |
| | STY4681 | Putative transcriptional regulator; Similar to Escherichia coli hypothetical protein YjdC yjdC SW:YJDC_ECOLI (P36656) (191 aa) fasta scores: E(): 0, 87.4% id in 191 aa. Pfam match to entry PF00440 tetR, Bacterial regulatory proteins, tetR family, score 23.80, E-value 0.00021. (191 aa) |
| | STY4668 | Conserved hypothetical protein; Similar to Mycobacterium tuberculosis hypothetical 18.0 kDa protein RV0919 or MTCY21c12.13 TR:O05911 (EMBL:Z95210) (166 aa) fasta scores: E(): 5.8e-29, 50.6% id in 156 aa, and to Escherichia coli orf79 protein TR:Q9S0Z0 (EMBL:AB024946) (176 aa) fasta scores: E(): 4.1e-12, 34.6% id in 133 aa. (162 aa) |
| | STY4638 | Similar to Bacteriophage P2 hypothetical 8.2 kDa protein in gpa 5'region orf82 SW:YO82_BPP2 (Q06424) (74 aa) fasta scores: E(): 5.3e-10, 47.1% id in 70 aa and bacteriophage 186 hypothetical 8.5 kDa protein CP80 SW:CP80_BP186 (P41059) (75 aa) fasta scores: E(): 1.6e-19, 69.3% id in 75 aa. Also similar to Escherichia coli TraR zinc finger protein SW:TRAR_ECOLI (P41065) (73 aa) fasta scores: E(): 1.1e-05, 38.9% id in 72 aa. Four cysteines postulated to be required for zinc binding in TraR are conserved. (75 aa) |
| | STY4637 | Putative exonuclease; Similar to Bacteriophage 186 hypothetical 21.5 kDa protein CP81 SW:CP81_BP186 (P41060) (194 aa) fasta scores: E(): 0, 72.5% id in 193 aa. (194 aa) |
| | STY4561 | Putative membrane protein; Weakly similar to Salmonella typhimurium plasmid pKM101 hypothetical protein TR:O06957 (EMBL:AF000360) (213 aa) fasta scores: E(): 1.4e-27, 48.2% id in 170 aa. Contains a hydrophobic region at the N-terminus. (189 aa) |
| | STY4522 | DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity and contains distinct active sites for ATP binding, DNA binding, and interaction with DnaC protein, primase, and other prepriming proteins. Belongs to the helicase family. DnaB subfamily. (454 aa) |
| | STY4518 | Putative acetyltransferase; Similar to Mycobacterium tuberculosis hypothetical 18.0 kDa protein RV0919 TR:O05911 (EMBL:Z95210) (166 aa) fasta scores: E(): 4.6e-26, 46.8% id in 156 aa, and to Escherichia coli ORF79 protein TR:Q9S0Z0 (EMBL:AB024946) (176 aa) fasta scores: E(): 4.6e-11, 32.8% id in 134 aa. (163 aa) |
| | STY4486 | Putative acetyltransferase; Similar to Escherichia coli PhnO protein SW:PHNO_ECOLI (P16691) (144 aa) fasta scores: E(): 0, 78.5% id in 144 aa, and to Streptomyces coelicolor hypothetical 16.7 kDa protein SCH24.35C TR:Q9X8U9 (EMBL:AL049826) (150 aa) fasta scores: E(): 4.9e-10, 33.1% id in 142 aa. (154 aa) |
| | STY4485 | Putative membrane-bound beta-hydroxylase; Similar to C-terminus of Bos taurus aspartyl/asparaginyl beta-hydroxylase aspH SW:ASPH_BOVIN (Q28056) (754 aa) fasta scores: E(): 3.4e-08, 26.1% id in 176 aa, Homo sapiens aspartyl/asparaginyl beta-hydroxylase aspH SW:ASPH_HUMAN (Q12797) (757 aa) fasta scores: E(): 4.7e-08, 26.0% id in 169 aa and to the N-terminus of Streptomyces verticillus beta-hydroxylase TR:Q53792 (EMBL:L26955) (304 aa) fasta scores: E(): 2e-07, 20.6% id in 218 aa. Contains N-terminal and C-terminal hydrophobic regions, probable membrane spanning domains. (302 aa) |
| | STY4465 | Putative glutathione S transferase; Similar to Pseudomonas syringae GstA TR:AAF71510 (EMBL:AF232006) (208 aa) fasta scores: E(): 3.3e-22, 45.0% id in 222 aa, and to Schizosaccharomyces pombe putative glutathione S transferase SPAC688.04C TR:CAB90771 (EMBL:AL355632) (242 aa) fasta scores: E(): 3.2e-24, 39.5% id in 210 aa; Belongs to the GST superfamily. (222 aa) |
| | STY4453 | Putative integral membrane protein; Similar to the C-terminus of Salmonella typhimurium hypothetical protein SPI4_A TR:O85311 (EMBL:AF060869) (524 aa) fasta scores: E(): 0, 95.4% id in 307 aa. Also similar to Salmonella typhimurium hypothetical protein SPI4_B TR:O85312 (EMBL:AF060869) (121 aa) fasta scores: E(): 0, 98.3% id in 121 aa. Contains multiple possible membrane spanning hydrophobic domains including a possible N-terminal signal sequence. (462 aa) |
| | STY4446 | Similar to Escherichia coli hypothetical 15.7 kDa protein in aphA-uvrA intergenic region SW:YJBQ_ECOLI (P32698) (138 aa) fasta scores: E(): 0, 79.0% id in 138 aa, and to Vibrio cholerae hypothetical protein VC0373 TR:Q9KUY5 (EMBL:AE004125) (139 aa) fasta scores: E(): 0, 62.6% id in 139 aa; Belongs to the UPF0047 family. (138 aa) |
| | dnaB | Replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity and contains distinct active sites for ATP binding, DNA binding, and interaction with DnaC protein, primase, and other prepriming proteins. (471 aa) |
| | STY4431 | Similar to Escherichia coli glycerol-3-phosphate acyltransferase PlsB SW:PLSB_ECOLI (P00482) (806 aa) fasta scores: E(): 0, 94.9% id in 805 aa, and to Haemophilus influenzae glycerol-3-phosphate acyltransferase PlsB SW:PLSB_HAEIN (P44857) (810 aa) fasta scores: E(): 0, 56.6% id in 806 aa; Belongs to the GPAT/DAPAT family. (806 aa) |
| | STY4415 | Putative membrane protein; Poor database matches, similar to Rhodobacter capsulatus PTS system, fructose-specific IIBC component FruA SW:PTFB_RHOCA (P23387) (578 aa) fasta scores: E(): 2.2e-05, 23.3% id in 510 aa. Predicted hydrophobic membrane spanning domains, integral membrane protein. (492 aa) |
| | yrdD | Conserved hypothetical protein; Orthologue of E. coli yrdD (YRDD_ECOLI); Fasta hit to YRDD_ECOLI (169 aa), 80% identity in 167 aa overlap. It also shows some smilarity to the C-terminus of some bacterial topoisomerase I. (180 aa) |
| | rplQ | 50S ribosomal subunit protein L17; Orthologue of E. coli rplQ (RL17_ECOLI); Fasta hit to RL17_ECOLI (127 aa), 99% identity in 127 aa overlap. (127 aa) |
| | rpsD | 30S ribosomal subunit protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. (206 aa) |
| | rpsK | 30S ribosomal subunit protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family. (129 aa) |
| | rpsM | 30S ribosomal subunit protein S13; Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits; these bridges are implicated in subunit movement. Contacts the tRNAs in the A and P-sites. Belongs to the universal ribosomal protein uS13 family. (118 aa) |
| | rpmJ | 50S ribosomal subunit protein L36; Orthologue of E. coli rpmJ (RL36_ECOLI); Fasta hit to RL36_ECOLI (38 aa), 100% identity in 38 aa overlap; Belongs to the bacterial ribosomal protein bL36 family. (38 aa) |
| | rplO | 50S ribosomal subunit protein L15; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family. (144 aa) |
| | rpmD | 50S ribosomal subunit protein L30; Orthologue of E. coli rpmD (RL30_ECOLI); Fasta hit to RL30_ECOLI (58 aa), 97% identity in 58 aa overlap. (59 aa) |
| | rpsE | 30S ribosomal subunit protein S5; With S4 and S12 plays an important role in translational accuracy; Belongs to the universal ribosomal protein uS5 family. (167 aa) |
| | rplR | 50S ribosomal subunit protein L18; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. (117 aa) |
| | rplF | 50S ribosomal subunit protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family. (177 aa) |
| | rpsH | 30S ribosomal subunit protein S8; One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; Belongs to the universal ribosomal protein uS8 family. (130 aa) |
| | rpsN | 30S ribosomal subunit protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family. (101 aa) |
| | rplE | 50S ribosomal subunit protein L5; This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. Contacts the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs. (179 aa) |
| | rplX | 50S ribosomal subunit protein L24; One of two assembly initiator proteins, it binds directly to the 5'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. (104 aa) |
| | rplN | 50S ribosomal subunit protein L14; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family. (123 aa) |
| | rpsQ | 30S ribosomal subunit protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA. (84 aa) |
| | rpmC | 50S ribosomal subunit protein L29; Orthologue of E. coli rpmC (RL29_ECOLI); Fasta hit to RL29_ECOLI (63 aa), 98% identity in 63 aa overlap; Belongs to the universal ribosomal protein uL29 family. (63 aa) |
| | rplP | 50S ribosomal subunit protein L16; Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs; Belongs to the universal ribosomal protein uL16 family. (136 aa) |
| | rpsC | 30S ribosomal subunit protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation (By similarity). Belongs to the universal ribosomal protein uS3 family. (233 aa) |
| | rplV | 50S ribosomal subunit protein L22; This protein binds specifically to 23S rRNA; its binding is stimulated by other ribosomal proteins, e.g. L4, L17, and L20. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome (By similarity). (110 aa) |
| | rpsS | 30S ribosomal subunit protein S19; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA. (92 aa) |
| | rplB | 50S ribosomal subunit protein L2; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family. (273 aa) |
| | rplW | 50S ribosomal subunit protein L23; One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome; Belongs to the universal ribosomal protein uL23 family. (100 aa) |
| | rplD | 50S ribosomal subunit protein L4; One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome. Forms part of the polypeptide exit tunnel. Belongs to the universal ribosomal protein uL4 family. (201 aa) |
| | rplC | 50S ribosomal subunit protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. (209 aa) |
| | rpsJ | 30S ribosomal subunit protein S10; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family. (103 aa) |
| | rpsG | 30S ribosomal subunit protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family. (156 aa) |
| | rpsL | 30S ribosomal subunit protein S12; With S4 and S5 plays an important role in translational accuracy. (124 aa) |
| | STY4267 | Conserved hypothetical protein; Similar to Escherichia coli 26.3 kDa protein in gntR-ggt intergenic region Yhhw SW:YHHW_ECOLI (P46852) (231 aa) fasta scores: E(): 0, 93.9% id in 231 aa, and to Synechocystis sp hypothetical 25.7 kDa protein SLL1773 TR:P73623 (EMBL:D90908) (232 aa) fasta scores: E(): 0, 51.1% id in 233 aa; Belongs to the pirin family. (231 aa) |
| | STY4224 | Similar to Escherichia coli hypothetical ABC transporter ATP-binding protein YhiH SW:YHIH_ECOLI (P37624) (894 aa) fasta scores: E(): 0, 89.3% id in 896 aa, and to Escherichia coli hypothetical ABC transporter ATP-binding protein YbhF SW:YBHF_ECOLI (P75776) (578 aa) fasta scores: E(): 0, 35.9% id in 574 aa. Predicted hydrophobic membrane spanning domains, integral membrane protein. (913 aa) |
| | STY4148 | Putative acetyltransferase; Similar to e.g. Escherichia coli hypothetical protein YafP yafP SW:YAFP_ECOLI (Q47158) (150 aa) fasta scores: E(): 4.6e-12, 34.4% id in 151 aa and Salmonella typhimurium orf X protein from plasmid inclL/M TR:O86935 (EMBL:AJ009820) (176 aa) fasta scores: E(): 1e-11, 31.4% id in 153 aa. (155 aa) |
| | STY4128 | Hypothetical protein; Unknown function. (310 aa) |
| | waaY | Similar to Salmonella typhimurium lipopolysaccharide core biosynthesis protein RfaY SW:RFAY_SALTY (P26472) (232 aa) fasta scores: E(): 0, 99.1% id in 232 aa, and to Escherichia coli lipopolysaccharide core biosynthesis protein RfaY SW:RFAY_ECOLI (P27240) (232 aa) fasta scores: E(): 0, 69.4% id in 232 aa. (232 aa) |
| | STY4067 | 50S ribosomal subunit protein L33; Orthologue of E. coli rpmG (RL33_ECOLI); Fasta hit to RL33_ECOLI (54 aa), 100% identity in 54 aa overlap; Belongs to the bacterial ribosomal protein bL33 family. (55 aa) |
| | STY4066 | 50S ribosomal subunit protein L28; Orthologue of E. coli rpmB (RL28_ECOLI); Fasta hit to RL28_ECOLI (77 aa), 96% identity in 77 aa overlap; Belongs to the bacterial ribosomal protein bL28 family. (78 aa) |
| | radC | Similar to Escherichia coli DNA repair protein RadC radC SW:RADC_ECOLI (P25531) (222 aa) fasta scores: E(): 0, 83.7% id in 215 aa, and to Haemophilus influenzae DNA repair protein SW:RADC_HAEIN (P44952) (234 aa) fasta scores: E(): 0, 51.2% id in 217 aa; Belongs to the UPF0758 family. YicR subfamily. (221 aa) |
| | STY4062 | Putative TetR-family transcriptional regulator; Required for nucleoid occlusion (NO) phenomenon, which prevents Z-ring formation and cell division over the nucleoid. Acts as a DNA-associated cell division inhibitor that binds simultaneously chromosomal DNA and FtsZ, and disrupts the assembly of FtsZ polymers. SlmA-DNA-binding sequences (SBS) are dispersed on non-Ter regions of the chromosome, preventing FtsZ polymerization at these regions. (198 aa) |
| | mgtB | Magnesium transport ATPase, P-type 2; Similar to Salmonella typhimurium Magnesium transport ATPase MgtB SW:ATMB_SALTY (P22036) (908 aa) fasta scores: E(): 0, 99.2% id in 908 aa. Contains multiple possible membrane spanning hydrophobic domains. Note located within Salmonella pathogenicity island 3; Paralogue of E. coli mgtA (ATMA_ECOLI); Fasta hit to ATMA_ECOLI (898 aa), 53% identity in 877 aa overlap. (908 aa) |
| | STY3942 | recF protein; The RecF protein is involved in DNA metabolism; it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP (By similarity). (357 aa) |
| | STY3940 | Chromosomal replication initiator protein; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids. (466 aa) |
| | rpmH | Similar to Escherichia coli 50s ribosomal protein l34 RpmH SW:RL34_ECOLI (P02437) (46 aa) fasta scores: E(): 1.5e-19, 100.0% id in 46 aa; Belongs to the bacterial ribosomal protein bL34 family. (46 aa) |
| | STY3852 | Putative haloacid dehalogenase-like hydrolase; Orthologue of E. coli yihX (YIHX_ECOLI); Fasta hit to YIHX_ECOLI (199 aa), 89% identity in 199 aa overlap. (199 aa) |
| | STY3850 | Conserved hypothetical protein; An aminoacyl-tRNA editing enzyme that deacylates mischarged D-aminoacyl-tRNAs. Also deacylates mischarged glycyl-tRNA(Ala), protecting cells against glycine mischarging by AlaRS. Acts via tRNA- based rather than protein-based catalysis; rejects L-amino acids rather than detecting D-amino acids in the active site. By recycling D- aminoacyl-tRNA to D-amino acids and free tRNA molecules, this enzyme counteracts the toxicity associated with the formation of D-aminoacyl- tRNA entities in vivo and helps enforce protein L-homochirality. Belongs to the DTD family. (145 aa) |
| | STY3849 | Putative acetyltransferase; Orthologue of E. coli yiiD (YIID_ECOLI); Fasta hit to YIID_ECOLI (329 aa), 95% identity in 313 aa overlap. (329 aa) |
| | STY3846 | Putative lipase; Similar to several including: Pseudomonas sp. lipase LipP TR:O52270 (EMBL:AF034088) (308 aa) fasta scores: E(): 1.8e-30, 38.4% id in 310 aa; Paralogue of E. coli ybaC (AES_ECOLI); Fasta hit to AES_ECOLI (319 aa), 31% identity in 261 aa overlap. (309 aa) |
| | STY3832 | Putative DNA-binding protein; Weakly similar to several including: Bacillus halodurans protein bh2909 TR:Q9K8U3 (EMBL:AP001517) (189 aa) fasta scores: E(): 1.2e-10, 28.7% id in 157 aa, and to Escherichia coli hypothetical 19.7 kDa protein YdcN SW:YDCN_ECOLI (P77626) (178 aa) fasta scores: E(): 2.7e-08, 25.6% id in 160 aa. (188 aa) |
| | STY3803 | Hypothetical protein; Weakly similar to several including: Escherichia coli hypothetical 35.6 kDa protein YegU SW:YEGU_ECOLI (P76418) (334 aa) fasta scores: E(): 3e-12, 31.4% id in 344 aa, and to Listeria monocytogenes ADP ribosyl glycohydrolase BvrC TR:Q9RLU1 (EMBL:AJ007877) (327 aa) fasta scores: E(): 3.5e-10, 27.7% id in 343 aa. (346 aa) |
| | STY3799 | Hypothetical protein; No significant database hits. (65 aa) |
| | STY3775 | Primosomal protein replication factor; Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA; Belongs to the helicase family. PriA subfamily. (732 aa) |
