(7 nodes) Porin domain superfamily network (Salmonella enterica Typhi)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

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Your Input:
	ompS1	Outer membrane protein S1; Forms pores that allow passive diffusion of small molecules across the outer membrane. (394 aa)
	STY0556	Outer membrane protein; Previously sequenced as Salmonella enteritidis outer membrane protein omp TR:Q9S4Z2 (EMBL:AF102556) (377 aa) fasta scores: E(): 0, 99.7% id in 377 aa, and weakly similar to Brucella melitensis porin omp2B TR:Q45311 (EMBL:U26440) (375 aa) fasta scores: E(): 0.074, 25.2% id in 313 aa, and to Aeromonas hydrophila outer membrane protein porin ii ompiI TR:Q9RNA1 (EMBL:AF183931) (351 aa) fasta scores: E(): 0.17, 22.6% id in 393 aa, and to Neisseria meningitidis iron-regulated protein FrpC frpC SW:FRPC_NEIME (P55127) (1829 aa) fasta scores: E(): 0.56, 26.4% id in 356 aa. (377 aa)
	ompC	Outer membrane protein C; Forms pores that allow passive diffusion of small molecules across the outer membrane; Belongs to the Gram-negative porin family. (378 aa)
	STY1002	Outer membrane protein F precursor; Forms pores that allow passive diffusion of small molecules across the outer membrane; Belongs to the Gram-negative porin family. (363 aa)
	ybfM	Putative outer membrane protein; Similar to Escherichia coli hypothetical 52.8 kDa protein in glns-fur intergenic region ybfM SW:YBFM_ECOLI (P75733) (468 aa) fasta scores: E(): 0, 91.2% id in 468 aa, andweakly to several Pseudomaonas porin proteins e.g. Pseudomonas putida benzoate-specific porin-like protein benF TR:Q9L7X9 (EMBL:AF218267) (397 aa) fasta scores: E(): 7.1e-06, 22.4% id in 416 aa, and to Pseudomonas aeruginosa outer membrane porin OprE precursor oprE TR:AAG03680 (EMBL:AE004467) (460 aa) fasta scores: E(): 5.5e-05, 21.0% id in 476 aa, and to Pseudomonas aeruginosa porin d [...] (468 aa)
	STY1649	Outer membrane protein; Forms pores that allow passive diffusion of small molecules across the outer membrane. (383 aa)
	STY0365	Outer membrane pore protein E precursor; Uptake of inorganic phosphate, phosphorylated compounds, and some other negatively charged solutes; Belongs to the Gram-negative porin family. (350 aa)

Your Current Organism:

Salmonella enterica Typhi

NCBI taxonomy Id: 220341
Other names: S. enterica subsp. enterica serovar Typhi str. CT18, Salmonella enterica subsp. enterica serovar Typhi CT18, Salmonella enterica subsp. enterica serovar Typhi str. CT18, Salmonella enterica subsp. enterica serovar Typhi strain CT18, Salmonella typhi CT18

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
STY0365	STY1002	gene:17584394	gene:17584990	Outer membrane pore protein E precursor; Uptake of inorganic phosphate, phosphorylated compounds, and some other negatively charged solutes; Belongs to the Gram-negative porin family.	Outer membrane protein F precursor; Forms pores that allow passive diffusion of small molecules across the outer membrane; Belongs to the Gram-negative porin family.	0.770
STY0365	STY1649	gene:17584394	gene:17585584	Outer membrane pore protein E precursor; Uptake of inorganic phosphate, phosphorylated compounds, and some other negatively charged solutes; Belongs to the Gram-negative porin family.	Outer membrane protein; Forms pores that allow passive diffusion of small molecules across the outer membrane.	0.558
STY0365	ompC	gene:17584394	gene:17586395	Outer membrane pore protein E precursor; Uptake of inorganic phosphate, phosphorylated compounds, and some other negatively charged solutes; Belongs to the Gram-negative porin family.	Outer membrane protein C; Forms pores that allow passive diffusion of small molecules across the outer membrane; Belongs to the Gram-negative porin family.	0.620
STY0365	ompS1	gene:17584394	gene:17586111	Outer membrane pore protein E precursor; Uptake of inorganic phosphate, phosphorylated compounds, and some other negatively charged solutes; Belongs to the Gram-negative porin family.	Outer membrane protein S1; Forms pores that allow passive diffusion of small molecules across the outer membrane.	0.562
STY1002	STY0365	gene:17584990	gene:17584394	Outer membrane protein F precursor; Forms pores that allow passive diffusion of small molecules across the outer membrane; Belongs to the Gram-negative porin family.	Outer membrane pore protein E precursor; Uptake of inorganic phosphate, phosphorylated compounds, and some other negatively charged solutes; Belongs to the Gram-negative porin family.	0.770
STY1002	STY1649	gene:17584990	gene:17585584	Outer membrane protein F precursor; Forms pores that allow passive diffusion of small molecules across the outer membrane; Belongs to the Gram-negative porin family.	Outer membrane protein; Forms pores that allow passive diffusion of small molecules across the outer membrane.	0.596
STY1002	ompC	gene:17584990	gene:17586395	Outer membrane protein F precursor; Forms pores that allow passive diffusion of small molecules across the outer membrane; Belongs to the Gram-negative porin family.	Outer membrane protein C; Forms pores that allow passive diffusion of small molecules across the outer membrane; Belongs to the Gram-negative porin family.	0.966
STY1002	ompS1	gene:17584990	gene:17586111	Outer membrane protein F precursor; Forms pores that allow passive diffusion of small molecules across the outer membrane; Belongs to the Gram-negative porin family.	Outer membrane protein S1; Forms pores that allow passive diffusion of small molecules across the outer membrane.	0.575
STY1649	STY0365	gene:17585584	gene:17584394	Outer membrane protein; Forms pores that allow passive diffusion of small molecules across the outer membrane.	Outer membrane pore protein E precursor; Uptake of inorganic phosphate, phosphorylated compounds, and some other negatively charged solutes; Belongs to the Gram-negative porin family.	0.558
STY1649	STY1002	gene:17585584	gene:17584990	Outer membrane protein; Forms pores that allow passive diffusion of small molecules across the outer membrane.	Outer membrane protein F precursor; Forms pores that allow passive diffusion of small molecules across the outer membrane; Belongs to the Gram-negative porin family.	0.596
STY1649	ompC	gene:17585584	gene:17586395	Outer membrane protein; Forms pores that allow passive diffusion of small molecules across the outer membrane.	Outer membrane protein C; Forms pores that allow passive diffusion of small molecules across the outer membrane; Belongs to the Gram-negative porin family.	0.582
STY1649	ompS1	gene:17585584	gene:17586111	Outer membrane protein; Forms pores that allow passive diffusion of small molecules across the outer membrane.	Outer membrane protein S1; Forms pores that allow passive diffusion of small molecules across the outer membrane.	0.697
ompC	STY0365	gene:17586395	gene:17584394	Outer membrane protein C; Forms pores that allow passive diffusion of small molecules across the outer membrane; Belongs to the Gram-negative porin family.	Outer membrane pore protein E precursor; Uptake of inorganic phosphate, phosphorylated compounds, and some other negatively charged solutes; Belongs to the Gram-negative porin family.	0.620
ompC	STY1002	gene:17586395	gene:17584990	Outer membrane protein C; Forms pores that allow passive diffusion of small molecules across the outer membrane; Belongs to the Gram-negative porin family.	Outer membrane protein F precursor; Forms pores that allow passive diffusion of small molecules across the outer membrane; Belongs to the Gram-negative porin family.	0.966
ompC	STY1649	gene:17586395	gene:17585584	Outer membrane protein C; Forms pores that allow passive diffusion of small molecules across the outer membrane; Belongs to the Gram-negative porin family.	Outer membrane protein; Forms pores that allow passive diffusion of small molecules across the outer membrane.	0.582
ompC	ompS1	gene:17586395	gene:17586111	Outer membrane protein C; Forms pores that allow passive diffusion of small molecules across the outer membrane; Belongs to the Gram-negative porin family.	Outer membrane protein S1; Forms pores that allow passive diffusion of small molecules across the outer membrane.	0.563
ompS1	STY0365	gene:17586111	gene:17584394	Outer membrane protein S1; Forms pores that allow passive diffusion of small molecules across the outer membrane.	Outer membrane pore protein E precursor; Uptake of inorganic phosphate, phosphorylated compounds, and some other negatively charged solutes; Belongs to the Gram-negative porin family.	0.562
ompS1	STY1002	gene:17586111	gene:17584990	Outer membrane protein S1; Forms pores that allow passive diffusion of small molecules across the outer membrane.	Outer membrane protein F precursor; Forms pores that allow passive diffusion of small molecules across the outer membrane; Belongs to the Gram-negative porin family.	0.575
ompS1	STY1649	gene:17586111	gene:17585584	Outer membrane protein S1; Forms pores that allow passive diffusion of small molecules across the outer membrane.	Outer membrane protein; Forms pores that allow passive diffusion of small molecules across the outer membrane.	0.697
ompS1	ompC	gene:17586111	gene:17586395	Outer membrane protein S1; Forms pores that allow passive diffusion of small molecules across the outer membrane.	Outer membrane protein C; Forms pores that allow passive diffusion of small molecules across the outer membrane; Belongs to the Gram-negative porin family.	0.563

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