STRINGSTRING
stgA stgA bcfA bcfA bcfD bcfD bcfE bcfE bcfF bcfF staG staG staF staF staE staE staD staD staA staA stbD stbD stbA stbA fimA fimA fimH fimH fimF fimF stcD stcD stcA stcA steD steD steE steE steF steF STY3174 STY3174 stdA stdA stgD stgD sthA sthA sthD sthD
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
stgAProbable fimbrial subunit protein; Similar to several including: Klebsiella pneumoniae Fimbrial subunit type 1 precursor Fim SW:FM12_KLEPN (P12903) (182 aa) fasta scores: E(): 8e-10, 38.2% id in 191 aa and Serratia marcescens type-1 fimbrial protein subunit precursor fimA SW:FM1A_SERMA (P22595) (180 aa) fasta scores: E(): 5.3e-09, 39.2% id in 194 aa; Fasta hit to SFMF_ECOLI (171 aa), 32% identity in 173 aa overlap; Fasta hit to FM1A_ECOLI (182 aa), 37% identity in 191 aa overlap; Fasta hit to FIMF_ECOLI (176 aa), 31% identity in 177 aa overlap; Paralogue of E. coli SFMA_ECOLI; Fasta hi [...] (191 aa)
bcfAFimbrial subunit; Similar to Salmonella typhimurium fimbrial subunit BCFA TR:Q9X604 (EMBL:AF130422) fasta scores: E(): 0, 99.4% id in 180 aa, and to Klebsiella pneumoniae fimbrial subunit type 1 precursor FIM SW:FM12_KLEPN (P12903) fasta scores: E(): 2.7e-22, 48.4% id in 184 aa; Fasta hit to YCBQ_ECOLI (182 aa), 40% identity in 180 aa overlap; Fasta hit to FIMF_ECOLI (176 aa), 30% identity in 152 aa overlap; Fasta hit to SFMA_ECOLI (191 aa), 39% identity in 179 aa overlap; Fasta hit to FIMG_ECOLI (167 aa), 34% identity in 164 aa overlap; Paralogue of E. coli fimA (FM1A_ECOLI); Fasta hi [...] (180 aa)
bcfDFimbrial subunit; Similar to Salmonella typhimurium fimbrial subunit BCFD TR:Q9X606 (EMBL:AF130422) fasta scores: E(): 0, 99.1% id in 335 aa, and to Salmonella typhimurium fimh protein precursor FIMH SW:FIMH_SALTY (P37925) fasta scores: E(): 0, 48.2% id in 332 aa; Fasta hit to YCBT_ECOLI (356 aa), 32% identity in 337 aa overlap; Paralogue of E. coli SFMH_ECOLI; Fasta hit to SFMH_ECOLI (325 aa), 45% identity in 317 aa overlap. (335 aa)
bcfEFimbrial subunit; Similar to Salmonella typhimurium fimbrial subunit BCFE TR:Q9X607 (EMBL:AF130422) fasta scores: E(): 0, 98.9% id in 181 aa, and to Salmonella typhimurium type-1 fimbrial protein, a chain precursor FIMA SW:FM1A_SALTY (P37921) fasta scores: E(): 1.1e-12, 35.1% id in 154 aa; Fasta hit to FIMF_ECOLI (176 aa), 33% identity in 151 aa overlap; Fasta hit to FM1A_ECOLI (182 aa), 31% identity in 155 aa overlap; Fasta hit to SFMA_ECOLI (191 aa), 33% identity in 154 aa overlap; Fasta hit to P77789 (176 aa), 31% identity in 163 aa overlap; Fasta hit to P75860 (187 aa), 30% identit [...] (181 aa)
bcfFFimbrial subunit; Similar to Salmonella typhimurium fimbrial subunit BCFF TR:Q9X608 (EMBL:AF130422) fasta scores: E(): 0, 98.8% id in 172 aa, and to Escherichia coli fimf protein precursor FIMF SW:FIMF_ECOLI (P08189) fasta scores: E(): 7.1e-18, 39.0% id in 177 aa; Fasta hit to FIMF_ECOLI (176 aa), 39% identity in 177 aa overlap; Fasta hit to FM1A_ECOLI (182 aa), 32% identity in 163 aa overlap; Fasta hit to SFMA_ECOLI (191 aa), 34% identity in 169 aa overlap; Fasta hit to P77789 (176 aa), 34% identity in 173 aa overlap; Fasta hit to YGIL_ECOLI (183 aa), 30% identity in 179 aa overlap; F [...] (172 aa)
staGPutative fimbrial protein; Similar to Serratia marcescens fimbria a protein precursor smfA SW:FMA_SERMA (P13421) (174 aa) fasta scores: E(): 0.96, 24.6% id in 142 aa, and to Salmonella typhimurium long polar fimbria protein a precursor lpfA SW:LPFA_SALTY (P43660) (178 aa) fasta scores: E(): 2.3, 26.3% id in 156 aa; Orthologue of E. coli yadC (YADC_ECOLI); Fasta hit to YADC_ECOLI (412 aa), 34% identity in 407 aa overlap. (391 aa)
staFPutative fimbrial protein; Similar to Escherichia coli major fimbrial subunit protein precursor f17d-A TR:Q47196 (EMBL:L77091) (181 aa) fasta scores: E(): 4.2e-05, 25.4% id in 181 aa, and to Klebsiella pneumoniae fimbrial subunit type 3 precursor mrkA SW:FM3_KLEPN (P12267) (202 aa) fasta scores: E(): 0.00013, 24.9% id in 205 aa; Orthologue of E. coli yadK (YADK_ECOLI); Fasta hit to YADK_ECOLI (198 aa), 37% identity in 174 aa overlap. (198 aa)
staEPutative fimbrial protein; Orthologue of E. coli yadL (YADL_ECOLI); Fasta hit to YADL_ECOLI (201 aa), 40% identity in 203 aa overlap. (204 aa)
staDPutative fimbrial protein; Some similarity to Escherichia coli AC/I pili pilAC/I or sfaA TR:Q57238 (EMBL:X76121) (181 aa) fasta scores: E(): 0.00068, 24.6% id in 187 aa, and to Escherichia coli type-1 fimbrial protein, a chain precursor fimA or pilA SW:FM1A_ECOLI (P04128) (182 aa) fasta scores: E(): 0.024, 26.1% id in 165 aa; Orthologue of E. coli yadM (YADM_ECOLI); Fasta hit to YADM_ECOLI (189 aa), 43% identity in 181 aa overlap. (188 aa)
staAPutative fimbrial protein; Similar to Klebsiella pneumoniae fimbrial subunit type 3 precursor mrkA SW:FM3_KLEPN (P12267) (202 aa) fasta scores: E(): 8.9e-05, 31.8% id in 214 aa, and to Salmonella typhimurium major fimbrial antigen subunit pefA TR:P72422 (EMBL:Y07657) (174 aa) fasta scores: E(): 0.00082, 30.8% id in 159 aa; Orthologue of E. coli yadN (YADN_ECOLI); Fasta hit to YADN_ECOLI (194 aa), 38% identity in 197 aa overlap. (194 aa)
stbDPutative fimbrial protein; Similar to Yersinia pestis protein showing similarity with pilin TR:Q9ZC29 (EMBL:AL031866) (449 aa) fasta scores: E(): 1.3e-16, 28.6% id in 420 aa. (441 aa)
stbAProbable fimbrial protein; Similar to Yersinia pestis similar to pilin precursor f17d-a TR:Q9ZC32 (EMBL:AL031866) (176 aa) fasta scores: E(): 2.2e-24, 45.5% id in 176 aa, and to Escherichia coli F17A fimbrial subunit precursor f17A TR:Q9RH94 (EMBL:AF055308) (181 aa) fasta scores: E(): 6.7e-16, 39.9% id in 183 aa. (178 aa)
fimAType-1 fimbrial protein, a chain precursor; Fimbriae (also called pili), polar filaments radiating from the surface of the bacterium to a length of 0.5-1.5 micrometers and numbering 100-300 per cell, enable bacteria to colonize the epithelium of specific host organs; Belongs to the fimbrial protein family. (184 aa)
fimHFimH protein precursor; Similar to Salmonella typhimurium FimH protein precursor fimH SW:FIMH_SALTY (P37925) (335 aa) fasta scores: E(): 0, 96.7% id in 335 aa, and to Escherichia coli SfmH protein precursor sfmH SW:SFMH_ECOLI (P75715; P77078) (325 aa) fasta scores: E(): 0, 68.8% id in 321 aa; Orthologue of E. coli SFMH_ECOLI; Fasta hit to SFMH_ECOLI (325 aa), 69% identity in 321 aa overlap. (335 aa)
fimFSimilar to Salmonella typhimurium fimbrial-like protein FimF precursor fimF SW:FIMF_SALTY (P37926) (172 aa) fasta scores: E(): 0, 98.8% id in 172 aa, and to Escherichia coli fimbrial-like protein SfmF precursor sfmF SW:SFMF_ECOLI (P38052; P75716; P77079) (171 aa) fasta scores: E(): 0, 57.9% id in 171 aa; Fasta hit to FM1A_ECOLI (182 aa), 34% identity in 159 aa overlap; Fasta hit to FIMF_ECOLI (176 aa), 31% identity in 167 aa overlap; Fasta hit to P75860 (187 aa), 32% identity in 178 aa overlap; Fasta hit to YFCP_ECOLI (179 aa), 32% identity in 146 aa overlap; Orthologue of E. coli ybcG [...] (172 aa)
stcDPutative exported protein; Orthologue of E. coli yehA (YEHA_ECOLI); Fasta hit to YEHA_ECOLI (344 aa), 50% identity in 342 aa overlap. Contains possible N-terminal signal sequence. (335 aa)
stcAPutative fimbrial subunit protein; Shows very weak similarity to e.g. Klebsiella pneumoniae fimbrial subunit type 1 precursor fim SW:FM12_KLEPN (P12903) (182 aa) fasta scores: E(): 0.11, 26.5% id in 189 aa. Contains probable N-terminal signal sequence; Orthologue of E. coli yehD (YEHD_ECOLI); Fasta hit to YEHD_ECOLI (180 aa), 32% identity in 182 aa overlap. (176 aa)
steDFimbrial subunit; Similar to Salmonella typhimurium minor fimbrial subunit StfE TR:O87660 (EMBL:AF093503) (170 aa) fasta scores: E(): 5.3e-31, 52.9% id in 170 aa and to Escherichia coli hypothetical prtein TR:P76501 (EMBL:AE000322) (170 aa) fasta scores: E(): 2.4e-22, 42.4% id in 158 aa; Fasta hit to P76500 (162 aa), 33% identity in 171 aa overlap; Orthologue of E. coli P76501; Fasta hit to P76501 (170 aa), 42% identity in 158 aa overlap. (168 aa)
steEFimbrial subunit; Similar to Salmonella typhimurium minor fimbrial subunit StfF TR:O87661 (EMBL:AF093503) (158 aa) fasta scores: E(): 1.2e-27, 47.5% id in 158 aa and to Escherichia coli hypothetical protein TR:P76500 (EMBL:AE000322) (162 aa) fasta scores: E(): 5.7e-21, 44.1% id in 161 aa; Orthologue of E. coli P76500; Fasta hit to P76500 (162 aa), 44% identity in 161 aa overlap. (156 aa)
steFFimbrial subunit; Similar to Salmonella typhimurium minor fimbrial subunit StfG TR:O87662 (EMBL:AF093503) (173 aa) fasta scores: E(): 2e-18, 41.0% id in 144 aa and to Escherichia coli hypothetical fimbrial-like protein in aroc-sixa intergenic region precursor yfcP SW:YFCP_ECOLI (P76499) (179 aa) fasta scores: E(): 1.5e-25, 43.6% id in 179 aa; Fasta hit to FIMF_ECOLI (176 aa), 35% identity in 168 aa overlap; Fasta hit to SFMA_ECOLI (191 aa), 31% identity in 154 aa overlap; Fasta hit to P77789 (176 aa), 32% identity in 159 aa overlap; Orthologue of E. coli YFCP_ECOLI; Fasta hit to YFCP_E [...] (178 aa)
STY3174Hypothetical protein; No database matches; within a low G+C region. (358 aa)
stdAProbable fimbrial protein; Similar to Escherichia coli hypothetical fimbrial-like protein precursor YbgD SW:YBGD_ECOLI (P37909; P75751) (188 aa) fasta scores: E(): 4.9e-11, 31.5% id in 200 aa; Fasta hit to FIMF_ECOLI (176 aa), 32% identity in 160 aa overlap; Fasta hit to YFCP_ECOLI (179 aa), 31% identity in 159 aa overlap. (193 aa)
stgDProbable fimbrial protein; Similar to Salmonella typhimurium FimH fimbrial protein precursor SW:FIMH_SALTY (P37925) (335 aa) fasta scores: E(): 9e-08, 23.6% id in 339 aa. (355 aa)
sthAPutative fimbrial protein; Similar to Escherichia coli major fimbrial subunit protein precursor f17d-A TR:Q47196 (EMBL:L77091) (181 aa) fasta scores: E(): 2.3e-10, 33.0% id in 188 aa, and to Escherichia coli minor fimbrial subunit, precursor polypeptide fimF TR:O87737 (EMBL:AJ225176) (176 aa) fasta scores: E(): 5.5e-10, 31.0% id in 184 aa. (181 aa)
sthDSimilar to Salmonella typhimurium fimbrial subunit bcfE TR:Q9X607 (EMBL:AF130422) (181 aa) fasta scores: E(): 3.3e-07, 30.4% id in 191 aa. (185 aa)
Your Current Organism:
Salmonella enterica Typhi
NCBI taxonomy Id: 220341
Other names: S. enterica subsp. enterica serovar Typhi str. CT18, Salmonella enterica subsp. enterica serovar Typhi CT18, Salmonella enterica subsp. enterica serovar Typhi str. CT18, Salmonella enterica subsp. enterica serovar Typhi strain CT18, Salmonella typhi CT18
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