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safC safC staC staC sefC sefC stdB stdB steB steB stcC stcC fimD fimD stbC stbC
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
safCSimilar to Escherichia coli aggregative adherence fimbria I usher protein AafC TR:Q9X4L5 (EMBL:AF114828) (856 aa) fasta scores: E(): 0, 49.9% id in 844 aa, and to Escherichia coli outer membrane usher protein AfaC precursor afaC SW:AFAC_ECOLI (P53517) (859 aa) fasta scores: E(): 0, 49.9% id in 849 aa; Fasta hit to YCBS_ECOLI (866 aa), 35% identity in 859 aa overlap; Fasta hit to YRAJ_ECOLI (838 aa), 36% identity in 843 aa overlap; Fasta hit to SFMD_ECOLI (867 aa), 35% identity in 846 aa overlap; Paralogue of E. coli fimD (FIMD_ECOLI); Fasta hit to FIMD_ECOLI (878 aa), 36% identity in 8 [...] (836 aa)
staCOuter membrane usher protein HtrE precursor; Fasta hit to YCBS_ECOLI (866 aa), 32% identity in 873 aa overlap; Fasta hit to YRAJ_ECOLI (838 aa), 34% identity in 841 aa overlap; Fasta hit to FIMD_ECOLI (878 aa), 33% identity in 881 aa overlap; Fasta hit to YEHB_ECOLI (826 aa), 32% identity in 833 aa overlap; Fasta hit to SFMD_ECOLI (867 aa), 31% identity in 866 aa overlap; Orthologue of E. coli htrE (HTRE_ECOLI); Fasta hit to HTRE_ECOLI (865 aa), 60% identity in 852 aa overlap. (863 aa)
sefCSimilar to Salmonella enteritidis outer membrane usher protein SefC precursor SW:SEFC_SALEN (P33388) (814 aa) fasta scores: E(): 0, 96.7% id in 838 aa, and to Salmonella typhimurium outer membrane usher protein FimD precursor fimD SW:FIMD_SALTY (P37924) (870 aa) fasta scores: E(): 0, 31.0% id in 836 aa. Identity with SefC is distrupted with Glycine-Valine repeat between codons 301 and 330. TTGGTG repeated 14 times. Possible effect on function. CDS DNA has a low GC content,35.71%. (838 aa)
stdBSimilar to Escherichia coli hypothetical outer membrane usher protein YqiG SW:YQIG_ECOLI (P76655) (821 aa) fasta scores: E(): 0, 42.2% id in 812 aa. (829 aa)
steBSimilar to Salmonella typhimurium outer membrane usher protein StfC TR:O87658 (EMBL:AF093503) (885 aa) fasta scores: E(): 0, 53.3% id in 891 aa. Contains a possible N-terminal signal sequence. (899 aa)
stcCSimilar to many e.g. Escherichia coli outer membrane usher protein HtrE precursor htrE SW:HTRE_ECOLI (P33129) (865 aa) fasta scores: E(): 0, 33.0% id in 854 aa. Contains probable N-terminbal signal sequence; Fasta hit to YCBS_ECOLI (866 aa), 31% identity in 804 aa overlap; Fasta hit to FIMD_ECOLI (878 aa), 31% identity in 835 aa overlap; Fasta hit to HTRE_ECOLI (865 aa), 33% identity in 855 aa overlap; Fasta hit to SFMD_ECOLI (867 aa), 31% identity in 828 aa overlap; Orthologue of E. coli yehB (YEHB_ECOLI); Fasta hit to YEHB_ECOLI (826 aa), 75% identity in 829 aa overlap. (829 aa)
fimDSimilar to Salmonella typhimurium outer membrane usher protein FimD precursor fimD SW:FIMD_SALTY (P37924) (870 aa) fasta scores: E(): 0, 98.0% id in 870 aa, and to Escherichia coli outer membrane usher protein SfmD precursor sfmD SW:SFMD_ECOLI (P77468) (867 aa) fasta scores: E(): 0, 70.0% id in 853 aa, and to Escherichia coli outer membrane usher protein FimD precursor fimD SW:FIMD_ECOLI (P30130) (878 aa) fasta scores: E(): 0, 47.6% id in 867 aa; Fasta hit to YCBS_ECOLI (866 aa), 48% identity in 869 aa overlap; Fasta hit to YRAJ_ECOLI (838 aa), 38% identity in 848 aa overlap; Fasta hit [...] (870 aa)
stbCSimilar to Escherichia coli outer membrane usher protein FimD precursor fimD SW:FIMD_ECOLI (P30130) (878 aa) fasta scores: E(): 0, 31.7% id in 877 aa, and to Salmonella typhimurium outer membrane usher protein FimD precursor fimD SW:FIMD_SALTY (P37924) (870 aa) fasta scores: E(): 0, 32.7% id in 860 aa; Fasta hit to YCBS_ECOLI (866 aa), 31% identity in 872 aa overlap; Fasta hit to YRAJ_ECOLI (838 aa), 32% identity in 840 aa overlap; Fasta hit to HTRE_ECOLI (865 aa), 31% identity in 853 aa overlap; Fasta hit to SFMD_ECOLI (867 aa), 32% identity in 856 aa overlap; Paralogue of E. coli fim [...] (853 aa)
Your Current Organism:
Salmonella enterica Typhi
NCBI taxonomy Id: 220341
Other names: S. enterica subsp. enterica serovar Typhi str. CT18, Salmonella enterica subsp. enterica serovar Typhi CT18, Salmonella enterica subsp. enterica serovar Typhi str. CT18, Salmonella enterica subsp. enterica serovar Typhi strain CT18, Salmonella typhi CT18
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