STRINGSTRING
stdA stdA bcfF bcfF STY0112 STY0112 safA safA stbC stbC stbA stbA fimD fimD fimH fimH STY1179 STY1179 STY1181 STY1181 stgA stgA sthD sthD sthB sthB
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
stdAProbable fimbrial protein; Similar to Escherichia coli hypothetical fimbrial-like protein precursor YbgD SW:YBGD_ECOLI (P37909; P75751) (188 aa) fasta scores: E(): 4.9e-11, 31.5% id in 200 aa; Fasta hit to FIMF_ECOLI (176 aa), 32% identity in 160 aa overlap; Fasta hit to YFCP_ECOLI (179 aa), 31% identity in 159 aa overlap. (193 aa)
bcfFFimbrial subunit; Similar to Salmonella typhimurium fimbrial subunit BCFF TR:Q9X608 (EMBL:AF130422) fasta scores: E(): 0, 98.8% id in 172 aa, and to Escherichia coli fimf protein precursor FIMF SW:FIMF_ECOLI (P08189) fasta scores: E(): 7.1e-18, 39.0% id in 177 aa; Fasta hit to FIMF_ECOLI (176 aa), 39% identity in 177 aa overlap; Fasta hit to FM1A_ECOLI (182 aa), 32% identity in 163 aa overlap; Fasta hit to SFMA_ECOLI (191 aa), 34% identity in 169 aa overlap; Fasta hit to P77789 (176 aa), 34% identity in 173 aa overlap; Fasta hit to YGIL_ECOLI (183 aa), 30% identity in 179 aa overlap; F [...] (172 aa)
STY0112DNA polymerase II; Orthologue of E. coli polB (DPO2_ECOLI); Fasta hit to DPO2_ECOLI (782 aa), 90% identity in 782 aa overlap. (783 aa)
safAProbable lipoprotein; No database matches. Contains N-terminal signal sequence and appropriately positioned PS00013 Prokaryotic membrane lipoprotein lipid attachment site. (164 aa)
stbCSimilar to Escherichia coli outer membrane usher protein FimD precursor fimD SW:FIMD_ECOLI (P30130) (878 aa) fasta scores: E(): 0, 31.7% id in 877 aa, and to Salmonella typhimurium outer membrane usher protein FimD precursor fimD SW:FIMD_SALTY (P37924) (870 aa) fasta scores: E(): 0, 32.7% id in 860 aa; Fasta hit to YCBS_ECOLI (866 aa), 31% identity in 872 aa overlap; Fasta hit to YRAJ_ECOLI (838 aa), 32% identity in 840 aa overlap; Fasta hit to HTRE_ECOLI (865 aa), 31% identity in 853 aa overlap; Fasta hit to SFMD_ECOLI (867 aa), 32% identity in 856 aa overlap; Paralogue of E. coli fim [...] (853 aa)
stbAProbable fimbrial protein; Similar to Yersinia pestis similar to pilin precursor f17d-a TR:Q9ZC32 (EMBL:AL031866) (176 aa) fasta scores: E(): 2.2e-24, 45.5% id in 176 aa, and to Escherichia coli F17A fimbrial subunit precursor f17A TR:Q9RH94 (EMBL:AF055308) (181 aa) fasta scores: E(): 6.7e-16, 39.9% id in 183 aa. (178 aa)
fimDSimilar to Salmonella typhimurium outer membrane usher protein FimD precursor fimD SW:FIMD_SALTY (P37924) (870 aa) fasta scores: E(): 0, 98.0% id in 870 aa, and to Escherichia coli outer membrane usher protein SfmD precursor sfmD SW:SFMD_ECOLI (P77468) (867 aa) fasta scores: E(): 0, 70.0% id in 853 aa, and to Escherichia coli outer membrane usher protein FimD precursor fimD SW:FIMD_ECOLI (P30130) (878 aa) fasta scores: E(): 0, 47.6% id in 867 aa; Fasta hit to YCBS_ECOLI (866 aa), 48% identity in 869 aa overlap; Fasta hit to YRAJ_ECOLI (838 aa), 38% identity in 848 aa overlap; Fasta hit [...] (870 aa)
fimHFimH protein precursor; Similar to Salmonella typhimurium FimH protein precursor fimH SW:FIMH_SALTY (P37925) (335 aa) fasta scores: E(): 0, 96.7% id in 335 aa, and to Escherichia coli SfmH protein precursor sfmH SW:SFMH_ECOLI (P75715; P77078) (325 aa) fasta scores: E(): 0, 68.8% id in 321 aa; Orthologue of E. coli SFMH_ECOLI; Fasta hit to SFMH_ECOLI (325 aa), 69% identity in 321 aa overlap. (335 aa)
STY1179Putative regulatory protein; Orthologue of E. coli csgD (CSGD_ECOLI); Fasta hit to CSGD_ECOLI (216 aa), 92% identity in 208 aa overlap. (208 aa)
STY1181Major curlin subunit precursor; Curlin is the structural subunit of the curli. Curli are coiled surface structures that assemble preferentially at growth temperatures below 37 degrees Celsius. Curli can bind to fibronectin (By similarity); Belongs to the CsgA/CsgB family. (151 aa)
stgAProbable fimbrial subunit protein; Similar to several including: Klebsiella pneumoniae Fimbrial subunit type 1 precursor Fim SW:FM12_KLEPN (P12903) (182 aa) fasta scores: E(): 8e-10, 38.2% id in 191 aa and Serratia marcescens type-1 fimbrial protein subunit precursor fimA SW:FM1A_SERMA (P22595) (180 aa) fasta scores: E(): 5.3e-09, 39.2% id in 194 aa; Fasta hit to SFMF_ECOLI (171 aa), 32% identity in 173 aa overlap; Fasta hit to FM1A_ECOLI (182 aa), 37% identity in 191 aa overlap; Fasta hit to FIMF_ECOLI (176 aa), 31% identity in 177 aa overlap; Paralogue of E. coli SFMA_ECOLI; Fasta hi [...] (191 aa)
sthDSimilar to Salmonella typhimurium fimbrial subunit bcfE TR:Q9X607 (EMBL:AF130422) (181 aa) fasta scores: E(): 3.3e-07, 30.4% id in 191 aa. (185 aa)
sthBSimilar to Escherichia coli chaperone protein FimC SW:FIMC_ECOLI (P31697; P71220) (241 aa) fasta scores: E(): 6.3e-23, 32.6% id in 218 aa, and to Proteus mirabilis type 1 fimbrial chaperone AtfB TR:P72210 (EMBL:Z78535) (225 aa) fasta scores: E(): 7.1e-24, 33.0% id in 221 aa, and to Salmonella typhi FinC gene finC TR:Q56085 (EMBL:X74602) (237 aa) fasta scores: E(): 5.3e-23, 33.0% id in 215 aa. (227 aa)
Your Current Organism:
Salmonella enterica Typhi
NCBI taxonomy Id: 220341
Other names: S. enterica subsp. enterica serovar Typhi str. CT18, Salmonella enterica subsp. enterica serovar Typhi CT18, Salmonella enterica subsp. enterica serovar Typhi str. CT18, Salmonella enterica subsp. enterica serovar Typhi strain CT18, Salmonella typhi CT18
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