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PFL_0419 PFL_0419 tatC tatC tatB tatB tatA tatA ubiB ubiB PFL_0426 PFL_0426 ubiE ubiE PFL_0428 PFL_0428 phaI phaI phaF phaF phaD phaD PFL_3978 PFL_3978 ubiG ubiG ybgC ybgC ubiX ubiX coq7 coq7 PFL_5965 PFL_5965 PFL_5966 PFL_5966 ubiH ubiH pepP pepP PFL_5969 PFL_5969 zapA zapA PFL_5971 PFL_5971 ubiD ubiD PFL_6033 PFL_6033 ubiC ubiC ubiA ubiA PFL_6245 PFL_6245 PFL_6265 PFL_6265
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
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textmining
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PFL_0419RNA methyltransferase, RsmE family; Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit. (235 aa)
tatCTwin arginine-targeting protein translocase TatC; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. Together with TatB, TatC is part of a receptor directly interacting with Tat signal peptides. (264 aa)
tatBTwin arginine-targeting protein translocase TatB; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. Together with TatC, TatB is part of a receptor directly interacting with Tat signal peptides. TatB may form an oligomeric binding site that transiently accommodates folded Tat precursor proteins before their translocation. (152 aa)
tatATwin arginine-targeting protein translocase, TatA/E family; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system. (93 aa)
ubiB2-polyprenylphenol 6-hydroxylase; Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis. (534 aa)
PFL_0426SCP-2 sterol transfer family protein; Identified by match to protein family HMM PF02036. (207 aa)
ubiEUbiquinone/menaquinone biosynthesis methyltransferase; Methyltransferase required for the conversion of demethylmenaquinol (DMKH2) to menaquinol (MKH2) and the conversion of 2-polyprenyl-6-methoxy-1,4-benzoquinol (DDMQH2) to 2-polyprenyl-3- methyl-6-methoxy-1,4-benzoquinol (DMQH2). (256 aa)
PFL_0428Putative polyhydroxyalkanoic acid system protein; Identified by match to protein family HMM PF09650; match to protein family HMM TIGR02610. (91 aa)
phaIPoly(3-hydroxyalkanoate) granule-associated protein PhaI; Identified by similarity to GB:BAB78724.1; match to protein family HMM PF05597; match to protein family HMM TIGR01837. (140 aa)
phaFPoly(3-hydroxyalkanoate) granule-associated protein PhaF; See Prieto et. al. 1999 (PMID: 9922249); identified by similarity to GB:BAB78723.1; similarity to GB:CAA09109.1; match to protein family HMM PF05597; match to protein family HMM TIGR01837. (290 aa)
phaDTranscriptional regulator PhaD; Identified by similarity to GB:BAB78722.1; match to protein family HMM PF00440. (206 aa)
PFL_3978Putative lipoprotein. (281 aa)
ubiG3-demethylubiquinone-9 3-O-methyltransferase; O-methyltransferase that catalyzes the 2 O-methylation steps in the ubiquinone biosynthetic pathway; Belongs to the methyltransferase superfamily. UbiG/COQ3 family. (232 aa)
ybgCTol-Pal system-associated acyl-CoA thioesterase; Identified by match to protein family HMM PF03061; match to protein family HMM TIGR00051; match to protein family HMM TIGR02799. (155 aa)
ubiXPolyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylase family protein; Flavin prenyltransferase that catalyzes the synthesis of the prenylated FMN cofactor (prenyl-FMN) for 4-hydroxy-3-polyprenylbenzoic acid decarboxylase UbiD. The prenyltransferase is metal-independent and links a dimethylallyl moiety from dimethylallyl monophosphate (DMAP) to the flavin N5 and C6 atoms of FMN; Belongs to the UbiX/PAD1 family. (210 aa)
coq72-nonaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Catalyzes the hydroxylation of 2-nonaprenyl-3-methyl-6- methoxy-1,4-benzoquinol during ubiquinone biosynthesis. (215 aa)
PFL_5965Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family protein; Identified by similarity to SP:P75728; match to protein family HMM PF01266; match to protein family HMM PF01494; match to protein family HMM TIGR01988. (405 aa)
PFL_5966Conserved hypothetical protein. (161 aa)
ubiH2-polyprenyl-6-methoxyphenol 4-hydroxylase; Identified by match to protein family HMM PF01266; match to protein family HMM PF01494; match to protein family HMM TIGR01984; match to protein family HMM TIGR01988. (395 aa)
pepPXaa-Pro aminopeptidase; Identified by similarity to SP:P15034; match to protein family HMM PF00557; match to protein family HMM PF05195. (444 aa)
PFL_5969Conserved hypothetical protein; Identified by match to protein family HMM PF03695; Belongs to the UPF0149 family. (185 aa)
zapAPutative cell division protein ZapA; Activator of cell division through the inhibition of FtsZ GTPase activity, therefore promoting FtsZ assembly into bundles of protofilaments necessary for the formation of the division Z ring. It is recruited early at mid-cell but it is not essential for cell division. (107 aa)
PFL_59715-formyltetrahydrofolate cyclo-ligase; Identified by match to protein family HMM PF01812; match to protein family HMM TIGR02727; Belongs to the 5-formyltetrahydrofolate cyclo-ligase family. (201 aa)
ubiD3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Catalyzes the decarboxylation of 3-octaprenyl-4-hydroxy benzoate to 2-octaprenylphenol, an intermediate step in ubiquinone biosynthesis. (488 aa)
PFL_6033Conserved hypothetical protein. (643 aa)
ubiCChorismate lyase; Removes the pyruvyl group from chorismate, with concomitant aromatization of the ring, to provide 4-hydroxybenzoate (4HB) for the ubiquinone pathway; Belongs to the UbiC family. (187 aa)
ubiA4-hydroxybenzoate polyprenyl transferase; Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of ubiquinone-8 (UQ-8) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 3-octaprenyl-4-hydroxybenzoate. (296 aa)
PFL_6245Putative lipoprotein. (103 aa)
PFL_6265Conserved hypothetical protein; Identified by match to protein family HMM TIGR02449. (69 aa)
Your Current Organism:
Pseudomonas protegens
NCBI taxonomy Id: 220664
Other names: P. protegens Pf-5, Pseudomonas fluorescens Pf-5, Pseudomonas protegens Pf-5, Pseudomonas protegens str. Pf-5, Pseudomonas protegens strain Pf-5, Pseudomonas sp. Pf-5
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