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pctA_2 pctA_2 pctC pctC PFL_0418 PFL_0418 PFL_0489 PFL_0489 motA motA motB motB PFL_0572 PFL_0572 PFL_0674 PFL_0674 PFL_0707 PFL_0707 PFL_0778 PFL_0778 PFL_0855 PFL_0855 PFL_1129 PFL_1129 PFL_1130 PFL_1130 PFL_1131 PFL_1131 PFL_1132 PFL_1132 PFL_1133 PFL_1133 cheB1 cheB1 PFL_1135 PFL_1135 flgF flgF flgG flgG flgH flgH flgI flgI flgJ flgJ flgK flgK flgL flgL fliC fliC flaG flaG fliD fliD fliS fliS PFL_1633 PFL_1633 fleQ fleQ fleS fleS fleR fleR fliE fliE fliF fliF fliG fliG fliH fliH fliI fliI fliJ fliJ fliK fliK fliL fliL fliM fliM fliN fliN fliO fliO fliP fliP fliQ fliQ fliR fliR flhB flhB flhA flhA flhF flhF fleN fleN fliA fliA cheY cheY cheZ cheZ cheA cheA cheB cheB PFL_1672 PFL_1672 PFL_1673 PFL_1673 PFL_1675 PFL_1675 PFL_1676 PFL_1676 PFL_1678 PFL_1678 PFL_1679 PFL_1679 PFL_1735 PFL_1735 PFL_1757 PFL_1757 aer_1 aer_1 aer_2 aer_2 PFL_2182 PFL_2182 PFL_2312 PFL_2312 PFL_2328 PFL_2328 PFL_2407 PFL_2407 PFL_2459 PFL_2459 PFL_2537 PFL_2537 PFL_2597 PFL_2597 PFL_3249 PFL_3249 PFL_3250 PFL_3250 aer_3 aer_3 PFL_3355 PFL_3355 PFL_4011 PFL_4011 PFL_4013 PFL_4013 PFL_4203 PFL_4203 flgE flgE flgD flgD flgC flgC flgB flgB PFL_4481 PFL_4481 PFL_4482 PFL_4482 flgA flgA PFL_4484 PFL_4484 PFL_4485 PFL_4485 PFL_4486 PFL_4486 bdlA bdlA PFL_4544 PFL_4544 PFL_4590 PFL_4590 pctA_1 pctA_1 PFL_5042 PFL_5042 PFL_5046 PFL_5046 PFL_5125 PFL_5125 PFL_5212 PFL_5212 PFL_5213 PFL_5213 PFL_5389 PFL_5389 chpC chpC chpA chpA pilJ pilJ pilI pilI pilH pilH pilG pilG PFL_5947 PFL_5947 PFL_5976 PFL_5976 algR algR PFL_6027 PFL_6027
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
pctA_2Chemotactic transducer PctA; Identified by similarity to GB:BAA23412.1; match to protein family HMM PF00015; match to protein family HMM PF00672; match to protein family HMM PF02743. (626 aa)
pctCChemotactic transducer PctC; Identified by similarity to GB:BAA23410.1; match to protein family HMM PF00015; match to protein family HMM PF00672; match to protein family HMM PF02743. (626 aa)
PFL_0418Methyl-accepting chemotaxis protein; Identified by match to protein family HMM PF00015; match to protein family HMM PF00672. (638 aa)
PFL_0489Methyl-accepting chemotaxis protein; Identified by match to protein family HMM PF00015; match to protein family HMM PF00672. (545 aa)
motAChemotaxis protein MotA; Identified by similarity to SP:P09348; match to protein family HMM TIGR03818. (283 aa)
motBChemotaxis protein MotB; Identified by similarity to SP:P0AF06; match to protein family HMM PF00691. (372 aa)
PFL_0572Methyl-accepting chemotaxis protein; Identified by match to protein family HMM PF00015; match to protein family HMM PF00672. (644 aa)
PFL_0674Methyl-accepting chemotaxis protein; Identified by match to protein family HMM PF00015. (653 aa)
PFL_0707Methyl-accepting chemotaxis protein; Identified by match to protein family HMM PF00015; match to protein family HMM PF00672; match to protein family HMM PF02743. (648 aa)
PFL_0778Methyl-accepting chemotaxis sensory transducer; Identified by match to protein family HMM PF00015; match to protein family HMM PF00672. (639 aa)
PFL_0855Methyl-accepting chemotaxis protein; Identified by match to protein family HMM PF00015; match to protein family HMM PF00672. (676 aa)
PFL_1129Methyl-accepting chemotaxis protein; Identified by match to protein family HMM PF00015; match to protein family HMM PF00672. (540 aa)
PFL_1130Identified by match to protein family HMM PF01584. (178 aa)
PFL_1131Chemotaxis protein methyltransferase, CheR family; Identified by similarity to GB:AAO92335.1; match to protein family HMM PF01739; match to protein family HMM PF03705. (424 aa)
PFL_1132Identified by match to protein family HMM PF01584. (228 aa)
PFL_1133Sensor histidine kinase/response regulator; Identified by similarity to GB:AAL46994.1; similarity to GB:AAO92337.1; match to protein family HMM PF00072; match to protein family HMM PF01584; match to protein family HMM PF01627; match to protein family HMM PF02518. (776 aa)
cheB1Response regulator domain/methylesterase, CheB family; Involved in chemotaxis. Part of a chemotaxis signal transduction system that modulates chemotaxis in response to various stimuli. Catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins or MCP) by CheR. Also mediates the irreversible deamidation of specific glutamine residues to glutamic acid. Belongs to the CheB family. (336 aa)
PFL_1135Response regulator/diguanylate cyclase domain protein; Identified by similarity to GB:AAL71852.1; match to protein family HMM PF00072; match to protein family HMM PF00990; match to protein family HMM TIGR00254. (333 aa)
flgFFlagellar basal-body rod protein FlgF; Identified by match to protein family HMM PF00460; match to protein family HMM TIGR02490; match to protein family HMM TIGR03506; Belongs to the flagella basal body rod proteins family. (246 aa)
flgGFlagellar basal-body rod protein FlgG; Identified by match to protein family HMM PF00460; match to protein family HMM PF06429; match to protein family HMM TIGR02488; match to protein family HMM TIGR03506; Belongs to the flagella basal body rod proteins family. (261 aa)
flgHFlagellar L-ring protein FlgH; Assembles around the rod to form the L-ring and probably protects the motor/basal body from shearing forces during rotation. (231 aa)
flgIFlagellar P-ring protein FlgI; Assembles around the rod to form the L-ring and probably protects the motor/basal body from shearing forces during rotation. (369 aa)
flgJFlagellar rod assembly protein/muramidase FlgJ; Identified by match to protein family HMM PF01832; match to protein family HMM TIGR02541. (420 aa)
flgKFlagellar hook-associated protein FlgK; Identified by match to protein family HMM PF00460; match to protein family HMM PF06429; match to protein family HMM TIGR02492; Belongs to the flagella basal body rod proteins family. (683 aa)
flgLFlagellar hook-associated protein 3; Identified by match to protein family HMM PF00669; match to protein family HMM TIGR02550. (522 aa)
fliCFlagellin FliC; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella. (283 aa)
flaGFlagellar protein FlaG; Identified by similarity to GB:AAT42121.1; match to protein family HMM PF03646. (123 aa)
fliDFlagellar hook-associated protein 2; Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end. (484 aa)
fliSFlagellar protein FliS; Identified by similarity to GB:AAT42123.1; match to protein family HMM PF02561; match to protein family HMM TIGR00208. (131 aa)
PFL_1633Flagellar protein, FliT; Identified by similarity to GB:AAT42124.1. (98 aa)
fleQSigma 54 dependent transcriptional regulator FleQ; Identified by similarity to GB:AAG47964.1; match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM PF06490. (491 aa)
fleSSensory box histidine kinase FleS; Identified by similarity to GB:AAA93529.1; match to protein family HMM PF00512; match to protein family HMM PF00989; match to protein family HMM PF02518. (403 aa)
fleRSigma-54 dependent DNA-binding response regulator FleR; Identified by similarity to GB:AAA93530.1; match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM PF02954. (468 aa)
fliEFlagellar hook-basal body complex protein FliE; Identified by match to protein family HMM PF02049; match to protein family HMM TIGR00205. (108 aa)
fliFFlagellar M-ring protein FliF; The M ring may be actively involved in energy transduction. Belongs to the FliF family. (595 aa)
fliGFlagellar motor switch protein FliG; FliG is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation. (339 aa)
fliHFlagellar assembly protein FliH; Identified by match to protein family HMM PF02108. (280 aa)
fliIFlagellum-specific ATP synthase FliI; Identified by similarity to SP:P26465; match to protein family HMM PF00006; match to protein family HMM TIGR01026; match to protein family HMM TIGR03496. (452 aa)
fliJFlagellar export protein FliJ; Identified by match to protein family HMM TIGR02473. (149 aa)
fliKFlagellar hook-length control protein FliK; Identified by match to protein family HMM PF02120. (467 aa)
fliLFlagellar basal body-associated protein FliL; Controls the rotational direction of flagella during chemotaxis; Belongs to the FliL family. (166 aa)
fliMFlagellar motor switch protein FliM; FliM is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation. (322 aa)
fliNFlagellar motor switch protein FliN; FliN is one of three proteins (FliG, FliN, FliM) that form the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation. Belongs to the FliN/MopA/SpaO family. (153 aa)
fliOFlagellar protein FliO; Identified by similarity to SP:Q51467; match to protein family HMM PF04347; match to protein family HMM TIGR03500. (147 aa)
fliPFlagellar biosynthetic protein FliP; Plays a role in the flagellum-specific transport system. Belongs to the FliP/MopC/SpaP family. (249 aa)
fliQFlagellar biosynthetic protein FliQ; Role in flagellar biosynthesis. Belongs to the FliQ/MopD/SpaQ family. (89 aa)
fliRFlagellar biosynthetic protein FliR; Role in flagellar biosynthesis. Belongs to the FliR/MopE/SpaR family. (260 aa)
flhBFlagellar biosynthetic protein FlhB; Required for formation of the rod structure in the basal body of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin; Belongs to the type III secretion exporter family. (378 aa)
flhAFlagellar biosynthesis protein FlhA; Required for formation of the rod structure of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin; Belongs to the FHIPEP (flagella/HR/invasion proteins export pore) family. (709 aa)
flhFFlagellar biosynthesis protein FlhF; Identified by match to protein family HMM PF00448; match to protein family HMM TIGR03499. (440 aa)
fleNFlagellar synthesis regulator FleN; Identified by match to protein family HMM PF01656. (276 aa)
fliAMotility sigma factor FliA; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor controls the expression of flagella-related genes; Belongs to the sigma-70 factor family. FliA subfamily. (246 aa)
cheYChemotaxis protein CheY; Identified by similarity to SP:P0AE67; match to protein family HMM PF00072. (123 aa)
cheZChemotaxis phosphatase CheZ; Plays an important role in bacterial chemotaxis signal transduction pathway by accelerating the dephosphorylation of phosphorylated CheY (CheY-P). (262 aa)
cheAChemotaxis sensor histidine kinase CheA; Identified by similarity to GB:AAC08064.1; match to protein family HMM PF01584; match to protein family HMM PF01627; match to protein family HMM PF02518; match to protein family HMM PF02895. (759 aa)
cheBChemotaxis response regulator/protein-glutamate methylesterase CheB; Involved in chemotaxis. Part of a chemotaxis signal transduction system that modulates chemotaxis in response to various stimuli. Catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins or MCP) by CheR. Also mediates the irreversible deamidation of specific glutamine residues to glutamic acid. Belongs to the CheB family. (373 aa)
PFL_1672Transporter, MotA/TolQ/ExbB proton channel family; Identified by match to protein family HMM PF01618. (246 aa)
PFL_1673OmpA/MotB domain protein; Identified by match to protein family HMM PF00691. (294 aa)
PFL_1675Identified by match to protein family HMM PF01584. (292 aa)
PFL_1676Identified by match to protein family HMM PF01584. (160 aa)
PFL_1678Conserved hypothetical protein. (109 aa)
PFL_1679Conserved hypothetical protein. (523 aa)
PFL_1735Methyl-accepting chemotaxis protein; Identified by match to protein family HMM PF00015; match to protein family HMM PF00672. (541 aa)
PFL_1757Methyl-accepting chemotaxis protein; Identified by match to protein family HMM PF00015; match to protein family HMM PF00672. (656 aa)
aer_1Aerotaxis receptor Aer; Identified by similarity to GB:AAD22405.1; match to protein family HMM PF00015; match to protein family HMM PF00989; match to protein family HMM PF08447; match to protein family HMM TIGR00229. (521 aa)
aer_2Aerotaxis receptor Aer; Identified by similarity to GB:AAD22405.1; match to protein family HMM PF00015; match to protein family HMM PF00989; match to protein family HMM PF08447; match to protein family HMM TIGR00229. (521 aa)
PFL_2182Methyl-accepting chemotaxis protein; Identified by match to protein family HMM PF00015; match to protein family HMM PF00672. (541 aa)
PFL_2312Methyl-accepting chemotaxis protein; Identified by match to protein family HMM PF00015; match to protein family HMM PF00672; match to protein family HMM PF02743. (671 aa)
PFL_2328Methyl-accepting chemotaxis protein; Identified by match to protein family HMM PF00015; match to protein family HMM PF00672; match to protein family HMM PF05227. (543 aa)
PFL_2407Methyl-accepting chemotaxis protein; Identified by match to protein family HMM PF00015; match to protein family HMM PF00672. (542 aa)
PFL_2459Response regulator; Identified by match to protein family HMM PF00072. (329 aa)
PFL_2537Methyl-accepting chemotaxis protein; Identified by match to protein family HMM PF00015; match to protein family HMM PF00672. (540 aa)
PFL_2597Methyl-accepting chemotaxis protein; Identified by match to protein family HMM PF00015. (541 aa)
PFL_3249Protein-glutamate methylesterase, CheB family; Identified by match to protein family HMM PF01339. (202 aa)
PFL_3250Chemotaxis protein methyltransferase, CheR family; Identified by match to protein family HMM PF01739; match to protein family HMM PF03705. (271 aa)
aer_3Aerotaxis receptor Aer; Identified by similarity to GB:AAD22405.1; match to protein family HMM PF00015; match to protein family HMM PF00989; match to protein family HMM PF08447; match to protein family HMM TIGR00229. (521 aa)
PFL_3355Methyl-accepting chemotaxis protein; Identified by match to protein family HMM PF00015; match to protein family HMM PF00672. (541 aa)
PFL_4011Methyl-accepting chemotaxis protein; Identified by match to protein family HMM PF00015; match to protein family HMM PF00672; match to protein family HMM PF08269. (559 aa)
PFL_4013Methyl-accepting chemotaxis protein; Identified by match to protein family HMM PF00015; match to protein family HMM PF00672. (715 aa)
PFL_4203Identified by match to protein family HMM PF00072; match to protein family HMM PF01584. (311 aa)
flgEFlagellar hook protein FlgE; Identified by similarity to SP:P0A1J1; match to protein family HMM PF00460; match to protein family HMM PF06429; match to protein family HMM PF07559; match to protein family HMM TIGR03506. (447 aa)
flgDFlagellar hook capping protein; Required for flagellar hook formation. May act as a scaffolding protein. (242 aa)
flgCFlagellar basal-body rod protein FlgC; Identified by match to protein family HMM PF00460; match to protein family HMM PF06429; match to protein family HMM TIGR01395; Belongs to the flagella basal body rod proteins family. (147 aa)
flgBFlagellar basal-body rod protein FlgB; Structural component of flagellum, the bacterial motility apparatus. Part of the rod structure of flagellar basal body. (135 aa)
PFL_4481Chemotaxis protein methyltransferase, CheR family; Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP. (275 aa)
PFL_4482Response regulator receiver domain/CheW-like domain protein; Identified by match to protein family HMM PF00072; match to protein family HMM PF01584. (310 aa)
flgAFlagella basal body P-ring formation protein FlgA; Identified by similarity to SP:P40131; match to protein family HMM PF08666; match to protein family HMM TIGR03170. (253 aa)
PFL_4484Anti-sigma-28 factor, FlgM; Identified by match to protein family HMM PF04316. (105 aa)
PFL_4485Identified by match to protein family HMM PF05130. (155 aa)
PFL_4486Type IV pilus assembly protein, PilZ family; Identified by match to protein family HMM PF07238. (248 aa)
bdlABiofilm dispersion protein BdlA; Identified by similarity to SP:Q9I3S1; match to protein family HMM PF00015; match to protein family HMM PF00989; match to protein family HMM PF08447; match to protein family HMM PF08448; match to protein family HMM TIGR00229. (439 aa)
PFL_4544Methyl-accepting chemotaxis transducer; Identified by match to protein family HMM PF00015; match to protein family HMM PF00672. (541 aa)
PFL_4590Methyl-accepting chemotaxis transducer/sensory box protein; Identified by match to protein family HMM PF00015; match to protein family HMM PF00989; match to protein family HMM PF08447; match to protein family HMM PF08448; match to protein family HMM TIGR00229. (439 aa)
pctA_1Chemotactic transducer PctA; Identified by similarity to GB:BAA23412.1; match to protein family HMM PF00015; match to protein family HMM PF00672; match to protein family HMM PF02743. (629 aa)
PFL_5042Identified by match to protein family HMM PF00072; match to protein family HMM PF01584. (300 aa)
PFL_5046Methyl-accepting chemotaxis protein; Identified by similarity to GB:AAG04950.1; match to protein family HMM PF00015. (527 aa)
PFL_5125Methyl-accepting chemotaxis protein; Identified by match to protein family HMM PF00015; match to protein family HMM PF00672. (713 aa)
PFL_5212Methyl-accepting chemotaxis transducer/sensory box protein; Identified by match to protein family HMM PF00015; match to protein family HMM PF00989; match to protein family HMM PF08447; match to protein family HMM PF08448; match to protein family HMM TIGR00229. (438 aa)
PFL_5213Methyl-accepting chemotaxis transducer/sensory box protein; Identified by match to protein family HMM PF00015; match to protein family HMM PF00989; match to protein family HMM PF08447; match to protein family HMM PF08448; match to protein family HMM TIGR00229. (438 aa)
PFL_5389Methyl-accepting chemotaxis protein; Identified by match to protein family HMM PF00015; match to protein family HMM PF00672. (540 aa)
chpCChemosensory protein ChpC; Identified by similarity to GB:AAC23933.1; match to protein family HMM PF01584. (149 aa)
chpAPutative sensor histidine kinase/response regulator ChpA; Identified by similarity to GB:AAC23931.2; match to protein family HMM PF00072; match to protein family HMM PF01584; match to protein family HMM PF01627; match to protein family HMM PF02518. (1969 aa)
pilJType IV pilus biogenesis protein PilJ; Identified by similarity to SP:P42257; match to protein family HMM PF00015. (687 aa)
pilIType IV pilus biogenesis protein PilI; Identified by similarity to SP:P43502; match to protein family HMM PF01584. (179 aa)
pilHType IV pilus response regulator PilH; Identified by similarity to SP:P43501; match to protein family HMM PF00072. (121 aa)
pilGType IV pilus response regulator PilG; Identified by similarity to SP:P46384; match to protein family HMM PF00072. (134 aa)
PFL_5947Methyl-accepting chemotaxis protein; Identified by match to protein family HMM PF00015; match to protein family HMM PF00672. (535 aa)
PFL_5976Putative flagellar protein FliL; Controls the rotational direction of flagella during chemotaxis; Belongs to the FliL family. (135 aa)
algRDNA-binding response regulator AlgR; Identified by similarity to GB:AAD31823.1; match to protein family HMM PF00072; match to protein family HMM PF04397. (248 aa)
PFL_6027Methyl-accepting chemotaxis protein; Identified by match to protein family HMM PF00015; match to protein family HMM PF00672. (658 aa)
Your Current Organism:
Pseudomonas protegens
NCBI taxonomy Id: 220664
Other names: P. protegens Pf-5, Pseudomonas fluorescens Pf-5, Pseudomonas protegens Pf-5, Pseudomonas protegens str. Pf-5, Pseudomonas protegens strain Pf-5, Pseudomonas sp. Pf-5
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