STRINGSTRING
PFL_1655 PFL_1655 PFL_1656 PFL_1656 PFL_1659 PFL_1659 PFL_1660 PFL_1660 PFL_1661 PFL_1661 PFL_1662 PFL_1662
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
PFL_1655Aminotransferase, DegT/DnrJ/EryC1/StrS family; Identified by match to protein family HMM PF01041; match to protein family HMM PF01212; Belongs to the DegT/DnrJ/EryC1 family. (373 aa)
PFL_1656Conserved hypothetical protein. (73 aa)
PFL_1659Bacterial transferase; Identified by match to protein family HMM PF00132. (212 aa)
PFL_1660Rieske 2Fe-2S domain protein; Identified by match to protein family HMM PF00355. (380 aa)
PFL_1661Conserved hypothetical protein. (206 aa)
PFL_1662Methyltransferase, FkbM family; Identified by match to protein family HMM TIGR01444. (411 aa)
Your Current Organism:
Pseudomonas protegens
NCBI taxonomy Id: 220664
Other names: P. protegens Pf-5, Pseudomonas fluorescens Pf-5, Pseudomonas protegens Pf-5, Pseudomonas protegens str. Pf-5, Pseudomonas protegens strain Pf-5, Pseudomonas sp. Pf-5
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