STRINGSTRING
dxr dxr qor_2 qor_2 PFL_4393 PFL_4393 rfbG rfbG PFL_5977 PFL_5977 qor_1 qor_1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
dxr1-deoxy-D-xylulose 5-phosphate reductoisomerase; Catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4- phosphate (MEP); Belongs to the DXR family. (396 aa)
qor_2NADPH:quinone reductase; Identified by similarity to SP:P28304; match to protein family HMM PF00107; match to protein family HMM PF08240. (325 aa)
PFL_4393NAD(P)H quinone oxidoreductase, PIG3 family; Identified by match to protein family HMM PF00107; match to protein family HMM PF08240; match to protein family HMM TIGR02824. (320 aa)
rfbGCDP-glucose-4,6-dehydratase; Identified by similarity to SP:P26397; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF07993; match to protein family HMM TIGR02622. (361 aa)
PFL_5977Oxidoreductase, zinc-binding dehydrogenase family; Identified by match to protein family HMM PF00107; match to protein family HMM PF08240. (325 aa)
qor_1NADPH:quinone reductase; Identified by similarity to SP:P28304; match to protein family HMM PF00107; match to protein family HMM PF08240. (324 aa)
Your Current Organism:
Pseudomonas protegens
NCBI taxonomy Id: 220664
Other names: P. protegens Pf-5, Pseudomonas fluorescens Pf-5, Pseudomonas protegens Pf-5, Pseudomonas protegens str. Pf-5, Pseudomonas protegens strain Pf-5, Pseudomonas sp. Pf-5
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