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PFL_3416 PFL_3416 pchI pchI pchH pchH PFL_3502 PFL_3502 PFL_3551 PFL_3551 PFL_3573 PFL_3573 fepC fepC PFL_3677 PFL_3677 PFL_3678 PFL_3678 uvrA_1 uvrA_1 PFL_4027 PFL_4027 PFL_4028 PFL_4028 macB2 macB2 pvdE pvdE peaH peaH PFL_4174 PFL_4174 PFL_4279 PFL_4279 PFL_4323 PFL_4323 PFL_4391 PFL_4391 aotP aotP PFL_4614 PFL_4614 PFL_4864 PFL_4864 gltL gltL PFL_5020 PFL_5020 potA potA phuV phuV PFL_5344 PFL_5344 hasD hasD PFL_5494 PFL_5494 PFL_5529 PFL_5529 pstB pstB uvrA_2 uvrA_2 prbD prbD potA-2 potA-2 choV choV mntA mntA ftsE ftsE PFL_5890 PFL_5890 potG potG PFL_5974 PFL_5974 ssuB ssuB metN2 metN2 znuC znuC PFL_0099 PFL_0099 PFL_0135 PFL_0135 PFL_0139 PFL_0139 cysA cysA atsC atsC PFL_0233 PFL_0233 metN1 metN1 PFL_0246 PFL_0246 tauB tauB PFL_0343 PFL_0343 hisV hisV PFL_0417 PFL_0417 msbA msbA livG livG livF livF urtE urtE urtD urtD PFL_0645 PFL_0645 PFL_0728 PFL_0728 opuCA opuCA dppF dppF dppD dppD PFL_0886 PFL_0886 lptB lptB ttg2A ttg2A aapP aapP hisP hisP braG braG braF braF ssuB2 ssuB2 PFL_1541 PFL_1541 ccmA ccmA PFL_5993 PFL_5993 PFL_1772 PFL_1772 PFL_1935 PFL_1935 uup uup lolD lolD PFL_2031 PFL_2031 rbsA rbsA macB1 macB1 PFL_2194 PFL_2194 pedB pedB PFL_2228 PFL_2228 PFL_2284 PFL_2284 potG2 potG2 PFL_2357 PFL_2357 PFL_2553 PFL_2553 PFL_2594 PFL_2594 PFL_2619 PFL_2619 PFL_2623 PFL_2623 pltJ pltJ PFL_2947 PFL_2947 fitA fitA fitC fitC fbpC fbpC PFL_3058 PFL_3058 mtlK mtlK PFL_3107 PFL_3107 PFL_3161 PFL_3161 PFL_3170 PFL_3170 PFL_3171 PFL_3171 PFL_3180 PFL_3180 PFL_3183 PFL_3183 metN3 metN3 aprD aprD tagT tagT PFL_3305 PFL_3305 modC modC
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
PFL_3416ABC transporter, 2 ATP-binding domain protein; Identified by match to protein family HMM PF00005. (545 aa)
pchIPutative ABC transporter, permease/ATP-binding protein; Previously identified and characterized. See Youard et al 2007 (PMID: 17938167) for more information; identified by similarity to GB:ABW70810.1; match to protein family HMM PF00005; match to protein family HMM PF00664. (588 aa)
pchHPutative ABC transporter, permease/ATP-binding protein; Previously identified and characterized. See Youard et al 2007 (PMID: 17938167) for more information; identified by similarity to GB:ABW70811.1; match to protein family HMM PF00005. (584 aa)
PFL_3502Iron-chelate uptake ABC transporter, FeCT family, ATP-binding protein; Identified by match to protein family HMM PF00005. (272 aa)
PFL_3551Amino acid ABC transporter, ATP-binding protein; Identified by similarity to SP:P0AAG3; match to protein family HMM PF00005. (269 aa)
PFL_3573Peptide ABC transporter, ATP-binding protein, YejF family; Identified by similarity to SP:P33916; match to protein family HMM PF00005; match to protein family HMM PF08352; Belongs to the ABC transporter superfamily. (524 aa)
fepCFerric enterobactin ABC transporter, ATP-binding protein FepC; Identified by similarity to SP:P23878; match to protein family HMM PF00005. (263 aa)
PFL_3677Branched-chain amino acid ABC transporter, ATP binding protein; Identified by similarity to SP:P21629; match to protein family HMM PF00005. (253 aa)
PFL_3678Branched-chain amino acid ABC transporter, ATP-binding protein; Identified by similarity to SP:P21630; match to protein family HMM PF00005. (231 aa)
uvrA_1Excinuclease ABC, A subunit; Identified by similarity to SP:O34863; match to protein family HMM PF00005; match to protein family HMM TIGR00630. (888 aa)
PFL_4027Oligopeptide/dipeptide ABC transporter, ATP-binding protein; Identified by similarity to SP:P77268; match to protein family HMM PF00005; match to protein family HMM PF08352; match to protein family HMM TIGR01727; Belongs to the ABC transporter superfamily. (331 aa)
PFL_4028Oligopeptide/dipeptide ABC transporter, ATP-binding protein; Identified by similarity to SP:P77622; match to protein family HMM PF00005; match to protein family HMM PF08352; match to protein family HMM TIGR01727; Belongs to the ABC transporter superfamily. (323 aa)
macB2Efflux ABC transporter, ATP-binding/permease protein; Part of the tripartite efflux system MacAB-TolC. MacB is a non-canonical ABC transporter that contains transmembrane domains (TMD), which form a pore in the inner membrane, and an ATP-binding domain (NBD), which is responsible for energy generation. Confers resistance against macrolides. (657 aa)
pvdEPyoverdine ABC transporter, permease/ATP-binding protein PvdE; Identified by similarity to GB:AAG05785.1; match to protein family HMM PF00005; match to protein family HMM TIGR01194. (550 aa)
peaH2-phenylethylamine uptake protein PeaH; Identified by similarity to GB:ABR57210.1; match to protein family HMM PF00005; match to protein family HMM PF00664. (572 aa)
PFL_4174Cation ABC transporter, MZT family, ATP-binding protein; Identified by match to protein family HMM PF00005. (247 aa)
PFL_4279Efflux ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005. (227 aa)
PFL_4323ABC transporter, permease/ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664. (606 aa)
PFL_4391ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF08402; Belongs to the ABC transporter superfamily. (329 aa)
aotPArginine/ornithine ABC transporter, ATP-binding protein AotP; Identified by similarity to SP:O30506; match to protein family HMM PF00005. (254 aa)
PFL_4614Putative sugar ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF03459; match to protein family HMM PF08402; Belongs to the ABC transporter superfamily. (386 aa)
PFL_4864ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF03459; match to protein family HMM PF08402; Belongs to the ABC transporter superfamily. (369 aa)
gltLGlutamate/aspartate ABC transporter, ATP-binding protein GltL; Identified by similarity to SP:P0AAG3; match to protein family HMM PF00005. (244 aa)
PFL_5020Amino acid ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005. (264 aa)
potAPolyamine ABC transporter, ATP-binding protein; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Spermidine/putrescine importer (TC 3.A.1.11.1) family. (372 aa)
phuVHemin ABC transporter, ATP-binding protein PhuV; Part of the ABC transporter complex HmuTUV involved in hemin import. Responsible for energy coupling to the transport system. (255 aa)
PFL_5344ATP-binding cassette protein, ChvD family; Identified by match to protein family HMM PF00005; match to protein family HMM TIGR03719. (554 aa)
hasDType 1 secretion system ATPase HasD; Identified by similarity to GB:BAA88492.1; match to protein family HMM PF00005; match to protein family HMM TIGR01842. (598 aa)
PFL_5494Putative ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005. (455 aa)
PFL_5529Efflux ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005. (236 aa)
pstBPhosphate ABC transporter, ATP-binding protein PstB; Part of the ABC transporter complex PstSACB involved in phosphate import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Phosphate importer (TC 3.A.1.7) family. (277 aa)
uvrA_2Excinuclease ABC, A subunit; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate. (944 aa)
prbDProline betaine ABC transporter, ATP-binding protein; Identified by similarity to GB:CAC46836.1; match to protein family HMM PF00005. (543 aa)
potA-2Polyamine ABC transporter, ATP-binding protein; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system. (374 aa)
choVCholine ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM TIGR01186; match to protein family HMM TIGR03415. (392 aa)
mntAmanganese(II)/zinc(II) ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005. (221 aa)
ftsECell division ATP-binding protein FtsE; Part of the ABC transporter FtsEX involved in cellular division. (223 aa)
PFL_5890Putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF08402; match to protein family HMM TIGR03265; Belongs to the ABC transporter superfamily. (358 aa)
potGPutrescine ABC transporter, ATP-binding protein; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system. (380 aa)
PFL_5974Putative ABC transporter, ATP binding/permease protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF01061. (908 aa)
ssuBAliphatic sulfonates ABC transporter, ATP-binding protein; Part of the ABC transporter complex SsuABC involved in aliphatic sulfonates import. Responsible for energy coupling to the transport system. (268 aa)
metN2D-methionine ABC transporter, ATP-binding protein MetN; Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system. (335 aa)
znuCHigh-affinity zinc ABC transporter, ATP-binding protein ZnuC; Part of the ABC transporter complex ZnuABC involved in zinc import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Zinc importer (TC 3.A.1.15.5) family. (261 aa)
PFL_0099ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005. (267 aa)
PFL_0135Type I secretion system ATPase; Identified by match to protein family HMM PF00005; match to protein family HMM TIGR03375. (717 aa)
PFL_0139ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005. (286 aa)
cysASulfate ABC transporter, ATP-binding protein CysA; Part of the ABC transporter complex CysAWTP involved in sulfate/thiosulfate import. Responsible for energy coupling to the transport system. (329 aa)
atsCSulfate ester ABC transporter, ATP-binding protein AtsC; Identified by similarity to GB:AAD31787.1; match to protein family HMM PF00005. (271 aa)
PFL_0233Amino acid ABC transporter, ATP-binding protein; Identified by similarity to SP:P10346; match to protein family HMM PF00005. (260 aa)
metN1D-methionine ABC transporter, ATP-binding protein MetN; Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system. (374 aa)
PFL_0246Polar amino acid ABC transporter, ATP-binding protein; Identified by similarity to SP:P37774; match to protein family HMM PF00005. (253 aa)
tauBTaurine ABC transporter, ATP-binding protein; Part of the ABC transporter complex TauABC involved in taurine import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Taurine importer (TC 3.A.1.17.1) family. (264 aa)
PFL_0343Amino acid ABC transporter, ATP-binding protein; Identified by similarity to SP:O30506; match to protein family HMM PF00005. (257 aa)
hisVHistidine ABC transporter, ATP-binding protein; Identified by similarity to GB:AAF78099.1; match to protein family HMM PF00005. (276 aa)
PFL_0417Amino acid ABC transporter, ATP-binding protein; Identified by similarity to SP:P0AAG3; match to protein family HMM PF00005. (244 aa)
msbALipid A export permease/ATP-binding protein MsbA; Involved in lipid A export and possibly also in glycerophospholipid export and for biogenesis of the outer membrane. Transmembrane domains (TMD) form a pore in the inner membrane and the ATP-binding domain (NBD) is responsible for energy generation. (601 aa)
livGHigh affinity branched-chain amino acid ABC transporter, ATP-binding protein LivG; Identified by similarity to SP:P0A9S7; match to protein family HMM PF00005. (290 aa)
livFHigh affinity branched-chain amino acid ABC transporter, ATP-binding protein LivF; Identified by similarity to SP:P22731; match to protein family HMM PF00005; Belongs to the ABC transporter superfamily. (238 aa)
urtEUrea ABC transporter, ATP-binding protein UrtE; Identified by match to protein family HMM PF00005; match to protein family HMM TIGR03410. (232 aa)
urtDUrea ABC transporter, ATP-binding protein UrtD; Identified by match to protein family HMM PF00005; match to protein family HMM TIGR03411. (286 aa)
PFL_0645Iron-chelate ABC transporter, FeCT family, ATP-binding protein; Identified by match to protein family HMM PF00005. (262 aa)
PFL_0728ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005. (521 aa)
opuCAGlycine betaine/carnitine/choline ABC transporter, ATP-binding protein; Identified by similarity to SP:O34992; match to protein family HMM PF00005; match to protein family HMM PF00571; match to protein family HMM TIGR01186. (385 aa)
dppFDipeptide ABC transporter, ATP-binding protein DppF; Identified by similarity to SP:P37313; match to protein family HMM PF00005; match to protein family HMM PF08352; match to protein family HMM TIGR01727; Belongs to the ABC transporter superfamily. (323 aa)
dppDDipeptide ABC transporter, ATP-binding protein DppD; Identified by similarity to SP:P0AAG0; match to protein family HMM PF00005; match to protein family HMM PF08352; match to protein family HMM TIGR01727; Belongs to the ABC transporter superfamily. (322 aa)
PFL_0886ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF05992; match to protein family HMM PF06472. (575 aa)
lptBLipopolysaccharide ABC transporter, ATP-binding protein LptB; Identified by similarity to SP:P0A9V1; match to protein family HMM PF00005. (241 aa)
ttg2AToluene tolerance ABC efflux transporter, ATP-binding protein; Identified by similarity to GB:AAD17957.1; match to protein family HMM PF00005. (269 aa)
aapPGeneral L-amino acid ABC transporter, ATP-binding protein AapP; Identified by similarity to SP:Q52815; match to protein family HMM PF00005. (254 aa)
hisPHistidine ABC transporter, ATP-binding protein HisP; Identified by similarity to SP:P07109; match to protein family HMM PF00005. (251 aa)
braGBranched-chain amino acid ABC transporter, ATP-binding protein BraG; Identified by similarity to SP:P21630; match to protein family HMM PF00005; Belongs to the ABC transporter superfamily. (233 aa)
braFBranched-chain amino acid ABC transporter, ATP-binding protein BraF; Identified by similarity to SP:P21629; match to protein family HMM PF00005. (255 aa)
ssuB2Aliphatic sulfonates ABC transporter, ATP-binding protein; Part of the ABC transporter complex SsuABC involved in aliphatic sulfonates import. Responsible for energy coupling to the transport system. (259 aa)
PFL_1541ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005. (610 aa)
ccmAHeme ABC exporter, ATP-binding protein CcmA; Part of the ABC transporter complex CcmAB involved in the biogenesis of c-type cytochromes; once thought to export heme, this seems not to be the case, but its exact role is uncertain. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. CcmA exporter (TC 3.A.1.107) family. (211 aa)
PFL_5993ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005. (636 aa)
PFL_1772ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005. (310 aa)
PFL_1935ABC transporter, permease/ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664; match to protein family HMM TIGR02204. (584 aa)
uupATP-binding cassette ATPase, Uup; Identified by similarity to SP:P43672; match to protein family HMM PF00005. (639 aa)
lolDLipoprotein-releasing system, ATP-binding protein LolD; Part of the ABC transporter complex LolCDE involved in the translocation of mature outer membrane-directed lipoproteins, from the inner membrane to the periplasmic chaperone, LolA. Responsible for the formation of the LolA-lipoprotein complex in an ATP-dependent manner. (232 aa)
PFL_2031ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005. (424 aa)
rbsARibose ABC transporter, ATP-binding protein; Based on sequence similarity with rbsA from E. coli (SP:P04983); identified by match to protein family HMM PF00005. (517 aa)
macB1Efflux ABC transporter, permease/ATP-binding protein; Part of the tripartite efflux system MacAB-TolC. MacB is a non-canonical ABC transporter that contains transmembrane domains (TMD), which form a pore in the inner membrane, and an ATP-binding domain (NBD), which is responsible for energy generation. Confers resistance against macrolides. (652 aa)
PFL_2194Amino acid ABC transporter, ATP-binding protein; Identified by similarity to SP:Q52815; match to protein family HMM PF00005. (266 aa)
pedB2-phenylethanol ABC efflux transporter, ATP-binding protein PedB; Identified by similarity to GB:ABR57216.1; match to protein family HMM PF00005; match to protein family HMM TIGR03864. (252 aa)
PFL_2228ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005. (222 aa)
PFL_2284Amino acid ABC transporter, ATP-binding protein; Identified by similarity to SP:P37774; match to protein family HMM PF00005. (248 aa)
potG2Putrescine ABC transporter, ATP-binding protein; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system. (380 aa)
PFL_2357Amino acid ABC transporter, ATP-binding protein; Identified by similarity to SP:P27675; match to protein family HMM PF00005. (254 aa)
PFL_2553Identified by match to protein family HMM PF00005; match to protein family HMM PF00528. (690 aa)
PFL_2594Ribose ABC transporter, ATP-binding protein; Part of an ABC transporter complex involved in carbohydrate import. Could be involved in ribose, galactose and/or methyl galactoside import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Carbohydrate importer 2 (CUT2) (TC 3.A.1.2) family. (515 aa)
PFL_2619Branched-chain amino acid ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005. (258 aa)
PFL_2623Branched-chain amino acid ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005. (255 aa)
pltJABC transporter, ATP binding/permease protein PltJ; Previously identified and sequenced (PMID 16269724; Brodhagen et al., 2005) called pltI in Pseudomonas sp. M18 (PMID: 16581203); identified by similarity to GB:AAY59067.1; match to protein family HMM PF00005. (589 aa)
PFL_2947ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005. (234 aa)
fitAType I secretion system ATPase FitA; Identified by similarity to GB:ABY91227.1; match to protein family HMM PF00005; match to protein family HMM PF00664; match to protein family HMM TIGR01846. (713 aa)
fitCType I secretion system ATPase FitC; See Pechy-Tarr et. al. (PMID: 18484997) for more information; identified by similarity to GB:ABY91229.1; match to protein family HMM PF00005; match to protein family HMM PF00664; match to protein family HMM TIGR01846. (719 aa)
fbpCiron(III) ABC transporter, ATP-binding protein; Part of the ABC transporter complex FbpABC involved in Fe(3+) ions import. Responsible for energy coupling to the transport system. (354 aa)
PFL_3058Amino acid ABC transporter, ATP-binding protein; Identified by similarity to SP:O30506; match to protein family HMM PF00005. (253 aa)
mtlKPolyol ABC transporter, ATP-binding protein MtlK; Identified by similarity to GB:AAC04471.1; match to protein family HMM PF00005; match to protein family HMM PF03459; match to protein family HMM PF08402; Belongs to the ABC transporter superfamily. (367 aa)
PFL_3107ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005. (528 aa)
PFL_3161ABC transporter, peptide/opine/nickel uptake transporter (PepT) family, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF08352; match to protein family HMM TIGR01727; Belongs to the ABC transporter superfamily. (596 aa)
PFL_3170ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664. (593 aa)
PFL_3171ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664. (635 aa)
PFL_3180ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005. (265 aa)
PFL_3183Nitrate/nitrite/cyanate ABC transporter, NitT family, ATP-binding protein; Identified by similarity to SP:P38045; match to protein family HMM PF00005. (279 aa)
metN3ABC transporter, ATP-binding protein; Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system. (325 aa)
aprDABC transporter; Identified by similarity to GB:AAF87590.1; similarity to GB:ABB55357.1; match to protein family HMM PF00005; match to protein family HMM TIGR01842. (593 aa)
tagTPutative Lol-like lipoprotein-translocating system, ATP-binding protein TagT; See Hsu et. al. 2009 (PMID: 19400797) for more information; identified by similarity to GB:AAG03463.1; match to protein family HMM PF00005. (238 aa)
PFL_3305Putative ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF08352; Belongs to the ABC transporter superfamily. (536 aa)
modCMolybdate ABC transporter, ATP-binding protein; Part of the ABC transporter complex ModABC involved in molybdenum import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Molybdate importer (TC 3.A.1.8) family. (360 aa)
Your Current Organism:
Pseudomonas protegens
NCBI taxonomy Id: 220664
Other names: P. protegens Pf-5, Pseudomonas fluorescens Pf-5, Pseudomonas protegens Pf-5, Pseudomonas protegens str. Pf-5, Pseudomonas protegens strain Pf-5, Pseudomonas sp. Pf-5
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