STRINGSTRING
PFL_0188 PFL_0188 PFL_0687 PFL_0687 PFL_1403 PFL_1403 PFL_1879 PFL_1879 aer_1 aer_1 aer_2 aer_2 PFL_2061 PFL_2061 PFL_2163 PFL_2163 fitF fitF aer_3 aer_3 PFL_3578 PFL_3578 PFL_3693 PFL_3693 PFL_4057 PFL_4057 bdlA bdlA PFL_4590 PFL_4590 PFL_5046 PFL_5046 PFL_5212 PFL_5212 PFL_5213 PFL_5213 morA morA PFL_5641 PFL_5641 PFL_5664 PFL_5664 PFL_6161 PFL_6161
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
PFL_0188Diguanylate cyclase (GGDEF) domain protein; Identified by match to protein family HMM PF00990; match to protein family HMM PF08447; match to protein family HMM PF08448; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254. (330 aa)
PFL_0687Sensory box histidine kinase; Identified by match to protein family HMM PF00512; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM PF08447; match to protein family HMM PF08448; match to protein family HMM TIGR00229. (922 aa)
PFL_1403Diguanylate cyclase (GGDEF) domain protein; Identified by match to protein family HMM PF00989; match to protein family HMM PF00990; match to protein family HMM PF01590; match to protein family HMM PF08447; match to protein family HMM PF08448; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254. (449 aa)
PFL_1879Putative CHASE domain/sensory box-containing nucleotide cyclase; Identified by match to protein family HMM PF00989; match to protein family HMM PF00990; match to protein family HMM PF03924; match to protein family HMM PF08447; match to protein family HMM PF08448; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254. (799 aa)
aer_1Aerotaxis receptor Aer; Identified by similarity to GB:AAD22405.1; match to protein family HMM PF00015; match to protein family HMM PF00989; match to protein family HMM PF08447; match to protein family HMM TIGR00229. (521 aa)
aer_2Aerotaxis receptor Aer; Identified by similarity to GB:AAD22405.1; match to protein family HMM PF00015; match to protein family HMM PF00989; match to protein family HMM PF08447; match to protein family HMM TIGR00229. (521 aa)
PFL_2061Sensory box/GGDEF domain/EAL domain protein; Identified by match to protein family HMM PF00563; match to protein family HMM PF00989; match to protein family HMM PF00990; match to protein family HMM PF08447; match to protein family HMM PF08448; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254. (1092 aa)
PFL_2163Sensory box histidine kinase; Identified by match to protein family HMM PF00512; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM PF08447; match to protein family HMM PF08448; match to protein family HMM TIGR00229. (633 aa)
fitFSensory box sensor histidine kinase/response regulator FitF; See Pechy-Tarr et. al. (PMID: 18484997) for more information; identified by similarity to GB:ABY91232.1; match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF01627; match to protein family HMM PF02518; match to protein family HMM PF08447; match to protein family HMM TIGR00229. (1059 aa)
aer_3Aerotaxis receptor Aer; Identified by similarity to GB:AAD22405.1; match to protein family HMM PF00015; match to protein family HMM PF00989; match to protein family HMM PF08447; match to protein family HMM TIGR00229. (521 aa)
PFL_3578Sensory box sensor histidine kinase/response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM PF08447; match to protein family HMM PF08448; match to protein family HMM TIGR00229. (846 aa)
PFL_3693Sensory box sensor histidine kinase/response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF02518; match to protein family HMM PF08447; match to protein family HMM TIGR00229. (703 aa)
PFL_4057Sensory box histidine kinase/response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM PF08447; match to protein family HMM PF08448; match to protein family HMM TIGR00229. (815 aa)
bdlABiofilm dispersion protein BdlA; Identified by similarity to SP:Q9I3S1; match to protein family HMM PF00015; match to protein family HMM PF00989; match to protein family HMM PF08447; match to protein family HMM PF08448; match to protein family HMM TIGR00229. (439 aa)
PFL_4590Methyl-accepting chemotaxis transducer/sensory box protein; Identified by match to protein family HMM PF00015; match to protein family HMM PF00989; match to protein family HMM PF08447; match to protein family HMM PF08448; match to protein family HMM TIGR00229. (439 aa)
PFL_5046Methyl-accepting chemotaxis protein; Identified by similarity to GB:AAG04950.1; match to protein family HMM PF00015. (527 aa)
PFL_5212Methyl-accepting chemotaxis transducer/sensory box protein; Identified by match to protein family HMM PF00015; match to protein family HMM PF00989; match to protein family HMM PF08447; match to protein family HMM PF08448; match to protein family HMM TIGR00229. (438 aa)
PFL_5213Methyl-accepting chemotaxis transducer/sensory box protein; Identified by match to protein family HMM PF00015; match to protein family HMM PF00989; match to protein family HMM PF08447; match to protein family HMM PF08448; match to protein family HMM TIGR00229. (438 aa)
morADevelopmental regulator MorA; Identified by similarity to GB:AAP85527.1; match to protein family HMM PF00563; match to protein family HMM PF00989; match to protein family HMM PF00990; match to protein family HMM PF08447; match to protein family HMM PF08448; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254. (1282 aa)
PFL_5641Sensory box histidine kinase; Identified by similarity to GB:AAG01454.2; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM PF07730; match to protein family HMM PF08447; match to protein family HMM PF08448; match to protein family HMM TIGR00229. (798 aa)
PFL_5664Diguanylate cyclase (GGDEF) domain protein; Identified by match to protein family HMM PF00497; match to protein family HMM PF00563; match to protein family HMM PF00989; match to protein family HMM PF00990; match to protein family HMM PF08447; match to protein family HMM PF08448; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254. (1247 aa)
PFL_6161Sensory box/GGDEF domain/EAL domain protein; Identified by match to protein family HMM PF00563; match to protein family HMM PF00989; match to protein family HMM PF00990; match to protein family HMM PF08447; match to protein family HMM PF08448; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254. (954 aa)
Your Current Organism:
Pseudomonas protegens
NCBI taxonomy Id: 220664
Other names: P. protegens Pf-5, Pseudomonas fluorescens Pf-5, Pseudomonas protegens Pf-5, Pseudomonas protegens str. Pf-5, Pseudomonas protegens strain Pf-5, Pseudomonas sp. Pf-5
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