STRINGSTRING
bkdB bkdB ofaB ofaB ofaA ofaA pvdL pvdL pvdI pvdI pvdJ pvdJ pvdD pvdD sucB sucB aceF aceF ofaC ofaC pchF pchF rzxA rzxA pchE pchE
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
bkdB2-oxoisovalerate dehydrogenase E2 component, dihydrolipoamide acyltransferase; Identified by similarity to SP:P09062; match to protein family HMM PF00198; match to protein family HMM PF00364; match to protein family HMM PF02817. (434 aa)
ofaBNon-ribosomal peptide synthetase OfaB; Previously identified and characterized. See Gross et al 2007 (PMID: 17254952) for more information; identified by match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00668; match to protein family HMM TIGR01733. (4367 aa)
ofaANon-ribosomal peptide synthetase OfaA; Previously identified and characterized. See Gross et al 2007 (PMID: 17254952) for more information; identified by match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00668; match to protein family HMM TIGR01733. (2121 aa)
pvdLNon-ribosomal peptide synthetase PvdL; Identified by similarity to GB:AAG05812.1; match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00668; match to protein family HMM PF03007; match to protein family HMM TIGR01720; match to protein family HMM TIGR01733. (4342 aa)
pvdINon-ribosomal peptide synthetase PvdI; Identified by match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00668; match to protein family HMM TIGR01720; match to protein family HMM TIGR01733. (3715 aa)
pvdJNon-ribosomal peptide synthetase PvdJ; Identified by match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00668; match to protein family HMM TIGR01733. (2193 aa)
pvdDNon-ribosomal peptide synthetase PvdD; Identified by match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00668; match to protein family HMM PF00975; match to protein family HMM TIGR01720; match to protein family HMM TIGR01733. (4410 aa)
sucBDihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex; E2 component of the 2-oxoglutarate dehydrogenase (OGDH) complex which catalyzes the second step in the conversion of 2- oxoglutarate to succinyl-CoA and CO(2). (407 aa)
aceFPyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). (649 aa)
ofaCNon-ribosomal peptide synthetase OfaC; Previously identified and characterized. See Gross et al 2007 (PMID: 17254952) for more information; identified by match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00668; match to protein family HMM PF00975; match to protein family HMM TIGR01733. (4901 aa)
pchFEnantio-pyochelin synthetase F; Previously identified and characterized. See Youard et al 2007 (PMID: 17938167) for more information; identified by similarity to GB:ABW70808.1; match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00668; match to protein family HMM PF00975; match to protein family HMM PF08241; match to protein family HMM PF08242; match to protein family HMM PF08415; match to protein family HMM TIGR01733. (1807 aa)
rzxAPolyketide synthase/nonribosomal peptide synthetase hybrid RzxA; Previously identified and characterized. See Loper et al 2008 (PMID: 18344330) and Brendel et al 2007 (PMID: 17609750) for more information; identified by match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF00668; match to protein family HMM PF02801; match to protein family HMM PF08415. (2355 aa)
pchEEnantio-pyochelin synthetase E; Previously identified and characterized. See Youard et al 2007 (PMID: 17938167) for more information; identified by similarity to GB:ABW70809.1; match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00668; match to protein family HMM PF08415; match to protein family HMM TIGR01733. (1156 aa)
Your Current Organism:
Pseudomonas protegens
NCBI taxonomy Id: 220664
Other names: P. protegens Pf-5, Pseudomonas fluorescens Pf-5, Pseudomonas protegens Pf-5, Pseudomonas protegens str. Pf-5, Pseudomonas protegens strain Pf-5, Pseudomonas sp. Pf-5
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