STRINGSTRING
PFL_1466 PFL_1466 PFL_1551 PFL_1551 PFL_2820 PFL_2820 PFL_4236 PFL_4236 PFL_0165 PFL_0165 PFL_0621 PFL_0621 PFL_0701 PFL_0701
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
PFL_1466Outer membrane protein, OMP85 family; Identified by match to protein family HMM PF01103; match to protein family HMM PF07244; match to protein family HMM PF08479. (583 aa)
PFL_1551Hemolysin secretion/activation protein, ShlB family; Identified by match to protein family HMM PF03865; match to protein family HMM PF08479. (580 aa)
PFL_2820Outer membrane protein, OMP85 family; Identified by match to protein family HMM PF01103; match to protein family HMM PF08479. (570 aa)
PFL_4236Hemolysin secretion/activation protein, ShlB family; Identified by match to protein family HMM PF03865; match to protein family HMM PF08479. (574 aa)
PFL_0165Conserved hypothetical protein. (105 aa)
PFL_0621Hemolysin secretion/activation protein, ShlB/FhaC/HecB family; Identified by similarity to GB:AAZ57197.1; match to protein family HMM PF03865; match to protein family HMM PF08479. (567 aa)
PFL_0701POTRA domain protein, ShlB-type; Identified by match to protein family HMM PF08479. (558 aa)
Your Current Organism:
Pseudomonas protegens
NCBI taxonomy Id: 220664
Other names: P. protegens Pf-5, Pseudomonas fluorescens Pf-5, Pseudomonas protegens Pf-5, Pseudomonas protegens str. Pf-5, Pseudomonas protegens strain Pf-5, Pseudomonas sp. Pf-5
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