14 items (Pseudomonas protegens) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	hcnC	Hydrogen cyanide synthase HcnC; Previously identified and sequenced. See Laville et al 1998 (PMID: 9620970) for more information; identified by similarity to GB:AAC38596.1; match to protein family HMM PF01266. (417 aa)
	pfeA	TonB-dependent outermembrane ferric enterobactin receptor; Receptor; identified by similarity to SP:Q05098; match to protein family HMM PF00593; match to protein family HMM PF07715; match to protein family HMM TIGR01783. (746 aa)
	gspG	General secretion pathway protein G; Identified by match to protein family HMM PF07963; match to protein family HMM PF08334; match to protein family HMM TIGR01710; match to protein family HMM TIGR02532. (149 aa)
	aprA	Extracellular alkaline metalloprotease AprA; Identified by similarity to SP:Q03023; similarity to GB:AAP44489.1; match to protein family HMM PF00353; match to protein family HMM PF00413; match to protein family HMM PF08548. (482 aa)
	pslD	Polysaccharide biosynthesis/export protein PslD; See Byrd et. al. (PMID: 19659934) for more information; identified by similarity to GB:AAG05622.1; match to protein family HMM PF02563. (258 aa)
	PFL_4236	Hemolysin secretion/activation protein, ShlB family; Identified by match to protein family HMM PF03865; match to protein family HMM PF08479. (574 aa)
	higA	Addiction module antidote protein HigA; Identified by match to protein family HMM TIGR02607. (96 aa)
	hasR	TonB-dependent outermembrane heme receptor HasR; Transducer; identified by similarity to GB:AAD31013.1; match to protein family HMM PF00593; match to protein family HMM PF07715; match to protein family HMM TIGR01785; match to protein family HMM TIGR01786. (901 aa)
	lapA	Large adhesive protein; Identified by similarity to GB:ABA71877.1; match to protein family HMM PF00092; match to protein family HMM PF00353; match to protein family HMM PF03160; match to protein family HMM TIGR03661. (4920 aa)
	dnaA	Chromosomal replication initiator protein DnaA; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids. (513 aa)
	PFL_0621	Hemolysin secretion/activation protein, ShlB/FhaC/HecB family; Identified by similarity to GB:AAZ57197.1; match to protein family HMM PF03865; match to protein family HMM PF08479. (567 aa)
	cinA	Competence/damage-inducible protein CinA; Identified by match to protein family HMM PF02464; match to protein family HMM TIGR00199; Belongs to the CinA family. (166 aa)
	PFL_1551	Hemolysin secretion/activation protein, ShlB family; Identified by match to protein family HMM PF03865; match to protein family HMM PF08479. (580 aa)
	hcnB	Hydrogen cyanide synthase HcnB; Previously identified and sequenced. See Laville et al 1998 (PMID: 9620970) for more information; identified by similarity to GB:AAF21029.2; match to protein family HMM PF00070; match to protein family HMM PF04324; match to protein family HMM PF07992. (469 aa)

Your Current Organism:

Pseudomonas protegens

NCBI taxonomy Id: 220664
Other names: P. protegens Pf-5, Pseudomonas fluorescens Pf-5, Pseudomonas protegens Pf-5, Pseudomonas protegens str. Pf-5, Pseudomonas protegens strain Pf-5, Pseudomonas sp. Pf-5

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PFL_0621	gspG	PFL_0621	PFL_2752	Hemolysin secretion/activation protein, ShlB/FhaC/HecB family; Identified by similarity to GB:AAZ57197.1; match to protein family HMM PF03865; match to protein family HMM PF08479.	General secretion pathway protein G; Identified by match to protein family HMM PF07963; match to protein family HMM PF08334; match to protein family HMM TIGR01710; match to protein family HMM TIGR02532.	0.536
PFL_0621	hcnB	PFL_0621	PFL_2578	Hemolysin secretion/activation protein, ShlB/FhaC/HecB family; Identified by similarity to GB:AAZ57197.1; match to protein family HMM PF03865; match to protein family HMM PF08479.	Hydrogen cyanide synthase HcnB; Previously identified and sequenced. See Laville et al 1998 (PMID: 9620970) for more information; identified by similarity to GB:AAF21029.2; match to protein family HMM PF00070; match to protein family HMM PF04324; match to protein family HMM PF07992.	0.405
PFL_0621	hcnC	PFL_0621	PFL_2579	Hemolysin secretion/activation protein, ShlB/FhaC/HecB family; Identified by similarity to GB:AAZ57197.1; match to protein family HMM PF03865; match to protein family HMM PF08479.	Hydrogen cyanide synthase HcnC; Previously identified and sequenced. See Laville et al 1998 (PMID: 9620970) for more information; identified by similarity to GB:AAC38596.1; match to protein family HMM PF01266.	0.406
PFL_0621	higA	PFL_0621	PFL_5369	Hemolysin secretion/activation protein, ShlB/FhaC/HecB family; Identified by similarity to GB:AAZ57197.1; match to protein family HMM PF03865; match to protein family HMM PF08479.	Addiction module antidote protein HigA; Identified by match to protein family HMM TIGR02607.	0.553
PFL_0621	pfeA	PFL_0621	PFL_2663	Hemolysin secretion/activation protein, ShlB/FhaC/HecB family; Identified by similarity to GB:AAZ57197.1; match to protein family HMM PF03865; match to protein family HMM PF08479.	TonB-dependent outermembrane ferric enterobactin receptor; Receptor; identified by similarity to SP:Q05098; match to protein family HMM PF00593; match to protein family HMM PF07715; match to protein family HMM TIGR01783.	0.420
PFL_1551	gspG	PFL_1551	PFL_2752	Hemolysin secretion/activation protein, ShlB family; Identified by match to protein family HMM PF03865; match to protein family HMM PF08479.	General secretion pathway protein G; Identified by match to protein family HMM PF07963; match to protein family HMM PF08334; match to protein family HMM TIGR01710; match to protein family HMM TIGR02532.	0.536
PFL_1551	hcnB	PFL_1551	PFL_2578	Hemolysin secretion/activation protein, ShlB family; Identified by match to protein family HMM PF03865; match to protein family HMM PF08479.	Hydrogen cyanide synthase HcnB; Previously identified and sequenced. See Laville et al 1998 (PMID: 9620970) for more information; identified by similarity to GB:AAF21029.2; match to protein family HMM PF00070; match to protein family HMM PF04324; match to protein family HMM PF07992.	0.405
PFL_1551	hcnC	PFL_1551	PFL_2579	Hemolysin secretion/activation protein, ShlB family; Identified by match to protein family HMM PF03865; match to protein family HMM PF08479.	Hydrogen cyanide synthase HcnC; Previously identified and sequenced. See Laville et al 1998 (PMID: 9620970) for more information; identified by similarity to GB:AAC38596.1; match to protein family HMM PF01266.	0.406
PFL_1551	higA	PFL_1551	PFL_5369	Hemolysin secretion/activation protein, ShlB family; Identified by match to protein family HMM PF03865; match to protein family HMM PF08479.	Addiction module antidote protein HigA; Identified by match to protein family HMM TIGR02607.	0.553
PFL_1551	pfeA	PFL_1551	PFL_2663	Hemolysin secretion/activation protein, ShlB family; Identified by match to protein family HMM PF03865; match to protein family HMM PF08479.	TonB-dependent outermembrane ferric enterobactin receptor; Receptor; identified by similarity to SP:Q05098; match to protein family HMM PF00593; match to protein family HMM PF07715; match to protein family HMM TIGR01783.	0.420
PFL_4236	aprA	PFL_4236	PFL_3210	Hemolysin secretion/activation protein, ShlB family; Identified by match to protein family HMM PF03865; match to protein family HMM PF08479.	Extracellular alkaline metalloprotease AprA; Identified by similarity to SP:Q03023; similarity to GB:AAP44489.1; match to protein family HMM PF00353; match to protein family HMM PF00413; match to protein family HMM PF08548.	0.512
PFL_4236	gspG	PFL_4236	PFL_2752	Hemolysin secretion/activation protein, ShlB family; Identified by match to protein family HMM PF03865; match to protein family HMM PF08479.	General secretion pathway protein G; Identified by match to protein family HMM PF07963; match to protein family HMM PF08334; match to protein family HMM TIGR01710; match to protein family HMM TIGR02532.	0.536
PFL_4236	hcnB	PFL_4236	PFL_2578	Hemolysin secretion/activation protein, ShlB family; Identified by match to protein family HMM PF03865; match to protein family HMM PF08479.	Hydrogen cyanide synthase HcnB; Previously identified and sequenced. See Laville et al 1998 (PMID: 9620970) for more information; identified by similarity to GB:AAF21029.2; match to protein family HMM PF00070; match to protein family HMM PF04324; match to protein family HMM PF07992.	0.507
PFL_4236	hcnC	PFL_4236	PFL_2579	Hemolysin secretion/activation protein, ShlB family; Identified by match to protein family HMM PF03865; match to protein family HMM PF08479.	Hydrogen cyanide synthase HcnC; Previously identified and sequenced. See Laville et al 1998 (PMID: 9620970) for more information; identified by similarity to GB:AAC38596.1; match to protein family HMM PF01266.	0.406
PFL_4236	higA	PFL_4236	PFL_5369	Hemolysin secretion/activation protein, ShlB family; Identified by match to protein family HMM PF03865; match to protein family HMM PF08479.	Addiction module antidote protein HigA; Identified by match to protein family HMM TIGR02607.	0.553
PFL_4236	lapA	PFL_4236	PFL_0133	Hemolysin secretion/activation protein, ShlB family; Identified by match to protein family HMM PF03865; match to protein family HMM PF08479.	Large adhesive protein; Identified by similarity to GB:ABA71877.1; match to protein family HMM PF00092; match to protein family HMM PF00353; match to protein family HMM PF03160; match to protein family HMM TIGR03661.	0.528
PFL_4236	pfeA	PFL_4236	PFL_2663	Hemolysin secretion/activation protein, ShlB family; Identified by match to protein family HMM PF03865; match to protein family HMM PF08479.	TonB-dependent outermembrane ferric enterobactin receptor; Receptor; identified by similarity to SP:Q05098; match to protein family HMM PF00593; match to protein family HMM PF07715; match to protein family HMM TIGR01783.	0.420
aprA	PFL_4236	PFL_3210	PFL_4236	Extracellular alkaline metalloprotease AprA; Identified by similarity to SP:Q03023; similarity to GB:AAP44489.1; match to protein family HMM PF00353; match to protein family HMM PF00413; match to protein family HMM PF08548.	Hemolysin secretion/activation protein, ShlB family; Identified by match to protein family HMM PF03865; match to protein family HMM PF08479.	0.512
aprA	hcnB	PFL_3210	PFL_2578	Extracellular alkaline metalloprotease AprA; Identified by similarity to SP:Q03023; similarity to GB:AAP44489.1; match to protein family HMM PF00353; match to protein family HMM PF00413; match to protein family HMM PF08548.	Hydrogen cyanide synthase HcnB; Previously identified and sequenced. See Laville et al 1998 (PMID: 9620970) for more information; identified by similarity to GB:AAF21029.2; match to protein family HMM PF00070; match to protein family HMM PF04324; match to protein family HMM PF07992.	0.442
gspG	PFL_0621	PFL_2752	PFL_0621	General secretion pathway protein G; Identified by match to protein family HMM PF07963; match to protein family HMM PF08334; match to protein family HMM TIGR01710; match to protein family HMM TIGR02532.	Hemolysin secretion/activation protein, ShlB/FhaC/HecB family; Identified by similarity to GB:AAZ57197.1; match to protein family HMM PF03865; match to protein family HMM PF08479.	0.536

page 1 of 3

Server load: low (28%) [HD]

Permalink

Network

Neighborhood

Experiments

Cooccurrence

Databases

Coexpression

Textmining

Fusion

© STRING Consortium 2025

Credits

Access

Info

About