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pltI pltI pltJ pltJ pltK pltK pltN pltN pltO pltO pltP pltP aprE aprE oprN oprN phlH phlH phlG phlG phlF phlF pltR pltR pltB pltB pltG pltG pltZ pltZ
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
pltIPutative membrane fusion protein; Previously identified and sequenced (PMID 16269724; Brodhagen et al., 2005) called pltH in Pseudomonas sp. M18 (PMID 16269724); identified by similarity to GB:AAY59066.1; match to protein family HMM PF00529. (337 aa)
pltJABC transporter, ATP binding/permease protein PltJ; Previously identified and sequenced (PMID 16269724; Brodhagen et al., 2005) called pltI in Pseudomonas sp. M18 (PMID: 16581203); identified by similarity to GB:AAY59067.1; match to protein family HMM PF00005. (589 aa)
pltKABC transporter, ATP-binding/permease protein PltK; Previously identified and sequenced (PMID 16269724; Brodhagen et al., 2005) Called PltJ in Pseudomonas sp. M18 (PMID 16581203); identified by similarity to GB:AAY59068.1; match to protein family HMM PF01061. (382 aa)
pltNABC transporter, permease protein PltN; Previously identified and sequenced (PMID 16269724; Brodhagen et al., 2005) Called pltK in Pseudomonas sp. M18 (PMID 16581203); identified by similarity to GB:AAY59069.1; match to protein family HMM PF01061. (372 aa)
pltOPutative multidrug efflux MFS outer membrane protein, PltO; Previously identified and sequenced (PMID 16269724; Brodhagen et al., 2005) Called pltN in Pseudomonas sp. M18 (PMID 16581203); identified by similarity to GB:AAY59070.1; match to protein family HMM PF02321; match to protein family HMM TIGR01845. (498 aa)
pltPEfflux protein, LysE family; Previously identified and sequenced (PMID 16269724; Brodhagen et al., 2005) Called pltO in Pseudomonas sp. M18 (PMID 16581203). (201 aa)
aprEMembrane fusion protein; Identified by similarity to GB:AAF87591.1; similarity to GB:ABM54444.1; match to protein family HMM PF00529; match to protein family HMM TIGR01843. (438 aa)
oprNMultidrug efflux RND transporter, outer membrane factor lipoprotein OprN; Identified by similarity to GB:CAA67865.1; match to protein family HMM PF02321; match to protein family HMM TIGR01845. (473 aa)
phlH2,4-diacetylphloroglucinol biosynthesis regulator PhlH; Previously identified and sequenced. See Schnider-Keel et al 2000 (PMID: 10671440) for more information; identified by similarity to GB:AAF20930.1; match to protein family HMM PF00440; match to protein family HMM PF09209. (223 aa)
phlG2,4-diacetylphloroglucinol specific hydrolase PhlG; Previously identified and sequenced. See Bottiglieri and Keel 2006 (PMID: 16391073) for more information; identified by similarity to GB:AAF20929.2. (294 aa)
phlFTranscriptional repressor PhlF; Previously identified and sequenced. See Schnider-Keel et al 2000 (PMID: 10671440) for more information; identified by similarity to GB:AAF20928.1; match to protein family HMM PF00440. (200 aa)
pltRTranscriptional regulator PltR; Identified by similarity to GB:AAQ90169.1; match to protein family HMM PF00126; match to protein family HMM PF03466; Belongs to the LysR transcriptional regulatory family. (343 aa)
pltBPolyketide synthase PltB; Previously identified and sequenced (PMID: 9434161 Nowak-Thompson et al. 1997); identified by similarity to GB:AAQ90173.1; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF00698; match to protein family HMM PF02801. (2458 aa)
pltGThioesterase PltG; Previously identified and sequenced (PMID: 10094695 Nowak-Thompson et al. 1999); identified by match to protein family HMM PF00975. (260 aa)
pltZTranscriptional regulator PltZ; Previously identified and sequenced (PMID 16269724; Brodhagen et al., 2005); identified by similarity to GB:AAQ90179.1; match to protein family HMM PF00440; match to protein family HMM PF09209. (223 aa)
Your Current Organism:
Pseudomonas protegens
NCBI taxonomy Id: 220664
Other names: P. protegens Pf-5, Pseudomonas fluorescens Pf-5, Pseudomonas protegens Pf-5, Pseudomonas protegens str. Pf-5, Pseudomonas protegens strain Pf-5, Pseudomonas sp. Pf-5
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