STRINGSTRING
pltR pltR pltL pltL pltZ pltZ pltI pltI
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
pltRTranscriptional regulator PltR; Identified by similarity to GB:AAQ90169.1; match to protein family HMM PF00126; match to protein family HMM PF03466; Belongs to the LysR transcriptional regulatory family. (343 aa)
pltLPeptidyl carrier protein PltL; Previously identified and sequenced(PMID: 10094695 Nowak-Thompson et al. 1999 PMID: 11880032 Thomas et al. 2002). (88 aa)
pltZTranscriptional regulator PltZ; Previously identified and sequenced (PMID 16269724; Brodhagen et al., 2005); identified by similarity to GB:AAQ90179.1; match to protein family HMM PF00440; match to protein family HMM PF09209. (223 aa)
pltIPutative membrane fusion protein; Previously identified and sequenced (PMID 16269724; Brodhagen et al., 2005) called pltH in Pseudomonas sp. M18 (PMID 16269724); identified by similarity to GB:AAY59066.1; match to protein family HMM PF00529. (337 aa)
Your Current Organism:
Pseudomonas protegens
NCBI taxonomy Id: 220664
Other names: P. protegens Pf-5, Pseudomonas fluorescens Pf-5, Pseudomonas protegens Pf-5, Pseudomonas protegens str. Pf-5, Pseudomonas protegens strain Pf-5, Pseudomonas sp. Pf-5
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