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choV choV PFL_2947 PFL_2947 PFL_2963 PFL_2963 fitA fitA fitC fitC fbpC fbpC PFL_3058 PFL_3058 mtlK mtlK PFL_3107 PFL_3107 PFL_3124 PFL_3124 PFL_3161 PFL_3161 PFL_3170 PFL_3170 PFL_3171 PFL_3171 PFL_3180 PFL_3180 PFL_3183 PFL_3183 metN3 metN3 aprD aprD PFL_3245 PFL_3245 PFL_3305 PFL_3305 modC modC PFL_3416 PFL_3416 pchI pchI pchH pchH PFL_3502 PFL_3502 PFL_3551 PFL_3551 PFL_3573 PFL_3573 PFL_3574 PFL_3574 fepC fepC bchI bchI PFL_3677 PFL_3677 PFL_3678 PFL_3678 PFL_3878 PFL_3878 clpA clpA lon_1 lon_1 PFL_4027 PFL_4027 PFL_4028 PFL_4028 macB2 macB2 pvdE pvdE peaH peaH peaR peaR PFL_4158 PFL_4158 PFL_4174 PFL_4174 PFL_4242 PFL_4242 PFL_4279 PFL_4279 PFL_4323 PFL_4323 PFL_4391 PFL_4391 aotP aotP PFL_4614 PFL_4614 tyrR tyrR dnaB_1 dnaB_1 ruvB ruvB PFL_4783 PFL_4783 PFL_4793 PFL_4793 dctD dctD PFL_4864 PFL_4864 gltL gltL PFL_4876 PFL_4876 PFL_4888 PFL_4888 lon_2 lon_2 PFL_5020 PFL_5020 PFL_5041 PFL_5041 PFL_5114 PFL_5114 potA potA phuV phuV cbrB cbrB clpB clpB pilR pilR PFL_5344 PFL_5344 radA radA hasD hasD PFL_5468 PFL_5468 PFL_5494 PFL_5494 PFL_5529 PFL_5529 prbD prbD PFL_5635 PFL_5635 potA-2 potA-2 pilT pilT ftsE ftsE PFL_2926 PFL_2926 PFL_5890 PFL_5890 potG potG ssuB ssuB PFL_5946 PFL_5946 PFL_5974 PFL_5974 rho rho PFL_5993 PFL_5993 PFL_6022 PFL_6022 aapP aapP PFL_2228 PFL_2228 pedB pedB PFL_2194 PFL_2194 fleR fleR fliI fliI ccmA ccmA PFL_1772 PFL_1772 dnaX dnaX PFL_1935 PFL_1935 uup uup lolD lolD PFL_2031 PFL_2031 rbsA rbsA macB1 macB1 acoR acoR ttg2A ttg2A lptB lptB PFL_0886 PFL_0886 dppD dppD dppF dppF opuCA opuCA ftsH ftsH recD recD PFL_0728 PFL_0728 PFL_0695 PFL_0695 PFL_0645 PFL_0645 urtE urtE livF livF livG livG msbA msbA hslU hslU PFL_0417 PFL_0417 hisV hisV glnG glnG PFL_0343 PFL_0343 PFL_0300 PFL_0300 tauB tauB PFL_0246 PFL_0246 metN1 metN1 PFL_0233 PFL_0233 PFL_0229 PFL_0229 atsC atsC cysA cysA PFL_0139 PFL_0139 PFL_0135 PFL_0135 PFL_0099 PFL_0099 algB algB znuC znuC metN2 metN2 dnaA dnaA tagT tagT clpV clpV pstB pstB mntA mntA atpD atpD pltJ pltJ gspE gspE PFL_2623 PFL_2623 PFL_2619 PFL_2619 PFL_2594 PFL_2594 PFL_2566 PFL_2566 PFL_2553 PFL_2553 PFL_2357 PFL_2357 potG2 potG2 rtcR rtcR recA recA hisP hisP braG braG braF braF ssuB2 ssuB2 PFL_1517 PFL_1517 hrpA hrpA PFL_1541 PFL_1541 phhR phhR fleQ fleQ PFL_2284 PFL_2284
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
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textmining
co-expression
protein homology
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choVCholine ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM TIGR01186; match to protein family HMM TIGR03415. (392 aa)
PFL_2947ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005. (234 aa)
PFL_2963Conserved hypothetical protein. (624 aa)
fitAType I secretion system ATPase FitA; Identified by similarity to GB:ABY91227.1; match to protein family HMM PF00005; match to protein family HMM PF00664; match to protein family HMM TIGR01846. (713 aa)
fitCType I secretion system ATPase FitC; See Pechy-Tarr et. al. (PMID: 18484997) for more information; identified by similarity to GB:ABY91229.1; match to protein family HMM PF00005; match to protein family HMM PF00664; match to protein family HMM TIGR01846. (719 aa)
fbpCiron(III) ABC transporter, ATP-binding protein; Part of the ABC transporter complex FbpABC involved in Fe(3+) ions import. Responsible for energy coupling to the transport system. (354 aa)
PFL_3058Amino acid ABC transporter, ATP-binding protein; Identified by similarity to SP:O30506; match to protein family HMM PF00005. (253 aa)
mtlKPolyol ABC transporter, ATP-binding protein MtlK; Identified by similarity to GB:AAC04471.1; match to protein family HMM PF00005; match to protein family HMM PF03459; match to protein family HMM PF08402; Belongs to the ABC transporter superfamily. (367 aa)
PFL_3107ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005. (528 aa)
PFL_3124Sigma-54 dependent transcriptional regulator; Identified by similarity to SP:Q00934; match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM PF07728. (441 aa)
PFL_3161ABC transporter, peptide/opine/nickel uptake transporter (PepT) family, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF08352; match to protein family HMM TIGR01727; Belongs to the ABC transporter superfamily. (596 aa)
PFL_3170ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664. (593 aa)
PFL_3171ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664. (635 aa)
PFL_3180ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005. (265 aa)
PFL_3183Nitrate/nitrite/cyanate ABC transporter, NitT family, ATP-binding protein; Identified by similarity to SP:P38045; match to protein family HMM PF00005. (279 aa)
metN3ABC transporter, ATP-binding protein; Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system. (325 aa)
aprDABC transporter; Identified by similarity to GB:AAF87590.1; similarity to GB:ABB55357.1; match to protein family HMM PF00005; match to protein family HMM TIGR01842. (593 aa)
PFL_3245Putative KaiC domain protein; Identified by match to protein family HMM PF09054. (500 aa)
PFL_3305Putative ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF08352; Belongs to the ABC transporter superfamily. (536 aa)
modCMolybdate ABC transporter, ATP-binding protein; Part of the ABC transporter complex ModABC involved in molybdenum import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Molybdate importer (TC 3.A.1.8) family. (360 aa)
PFL_3416ABC transporter, 2 ATP-binding domain protein; Identified by match to protein family HMM PF00005. (545 aa)
pchIPutative ABC transporter, permease/ATP-binding protein; Previously identified and characterized. See Youard et al 2007 (PMID: 17938167) for more information; identified by similarity to GB:ABW70810.1; match to protein family HMM PF00005; match to protein family HMM PF00664. (588 aa)
pchHPutative ABC transporter, permease/ATP-binding protein; Previously identified and characterized. See Youard et al 2007 (PMID: 17938167) for more information; identified by similarity to GB:ABW70811.1; match to protein family HMM PF00005. (584 aa)
PFL_3502Iron-chelate uptake ABC transporter, FeCT family, ATP-binding protein; Identified by match to protein family HMM PF00005. (272 aa)
PFL_3551Amino acid ABC transporter, ATP-binding protein; Identified by similarity to SP:P0AAG3; match to protein family HMM PF00005. (269 aa)
PFL_3573Peptide ABC transporter, ATP-binding protein, YejF family; Identified by similarity to SP:P33916; match to protein family HMM PF00005; match to protein family HMM PF08352; Belongs to the ABC transporter superfamily. (524 aa)
PFL_3574Sigma-54 dependent transcriptional regulator; Identified by match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM PF08448. (472 aa)
fepCFerric enterobactin ABC transporter, ATP-binding protein FepC; Identified by similarity to SP:P23878; match to protein family HMM PF00005. (263 aa)
bchIMagnesium chelatase, subunit BchI; Identified by similarity to SP:P26239; match to protein family HMM PF01078; match to protein family HMM PF07728. (335 aa)
PFL_3677Branched-chain amino acid ABC transporter, ATP binding protein; Identified by similarity to SP:P21629; match to protein family HMM PF00005. (253 aa)
PFL_3678Branched-chain amino acid ABC transporter, ATP-binding protein; Identified by similarity to SP:P21630; match to protein family HMM PF00005. (231 aa)
PFL_3878Recombination factor protein RarA; Identified by match to protein family HMM PF00004. (441 aa)
clpAATP-dependent Clp protease ATP-binding subunit ClpA; Identified by similarity to SP:P0ABH9; match to protein family HMM PF00004; match to protein family HMM PF02861; match to protein family HMM PF07724; match to protein family HMM PF07728; match to protein family HMM TIGR02639; Belongs to the ClpA/ClpB family. (756 aa)
lon_1Endopeptidase La; ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short- lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner. (798 aa)
PFL_4027Oligopeptide/dipeptide ABC transporter, ATP-binding protein; Identified by similarity to SP:P77268; match to protein family HMM PF00005; match to protein family HMM PF08352; match to protein family HMM TIGR01727; Belongs to the ABC transporter superfamily. (331 aa)
PFL_4028Oligopeptide/dipeptide ABC transporter, ATP-binding protein; Identified by similarity to SP:P77622; match to protein family HMM PF00005; match to protein family HMM PF08352; match to protein family HMM TIGR01727; Belongs to the ABC transporter superfamily. (323 aa)
macB2Efflux ABC transporter, ATP-binding/permease protein; Part of the tripartite efflux system MacAB-TolC. MacB is a non-canonical ABC transporter that contains transmembrane domains (TMD), which form a pore in the inner membrane, and an ATP-binding domain (NBD), which is responsible for energy generation. Confers resistance against macrolides. (657 aa)
pvdEPyoverdine ABC transporter, permease/ATP-binding protein PvdE; Identified by similarity to GB:AAG05785.1; match to protein family HMM PF00005; match to protein family HMM TIGR01194. (550 aa)
peaH2-phenylethylamine uptake protein PeaH; Identified by similarity to GB:ABR57210.1; match to protein family HMM PF00005; match to protein family HMM PF00664. (572 aa)
peaRSigma-54 dependent transcriptional activator PeaR; Identified by similarity to SP:P28614; match to protein family HMM PF00158; match to protein family HMM PF01590; match to protein family HMM PF02954; match to protein family HMM PF07728. (634 aa)
PFL_4158Sigma-54 dependent transcriptional regulator; Identified by similarity to SP:P17899; match to protein family HMM PF00158; match to protein family HMM PF07728. (366 aa)
PFL_4174Cation ABC transporter, MZT family, ATP-binding protein; Identified by match to protein family HMM PF00005. (247 aa)
PFL_4242Conserved hypothetical protein; Identified by match to protein family HMM PF05673. (296 aa)
PFL_4279Efflux ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005. (227 aa)
PFL_4323ABC transporter, permease/ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664. (606 aa)
PFL_4391ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF08402; Belongs to the ABC transporter superfamily. (329 aa)
aotPArginine/ornithine ABC transporter, ATP-binding protein AotP; Identified by similarity to SP:O30506; match to protein family HMM PF00005. (254 aa)
PFL_4614Putative sugar ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF03459; match to protein family HMM PF08402; Belongs to the ABC transporter superfamily. (386 aa)
tyrRTranscriptional regulatory protein TyrR; Identified by similarity to SP:P07604; match to protein family HMM PF00158; match to protein family HMM PF00989; match to protein family HMM PF07728. (502 aa)
dnaB_1Replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity and contains distinct active sites for ATP binding, DNA binding, and interaction with DnaC protein, primase, and other prepriming proteins. Belongs to the helicase family. DnaB subfamily. (449 aa)
ruvBHolliday junction DNA helicase RuvB; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. (352 aa)
PFL_4783Conserved hypothetical protein; Identified by match to protein family HMM PF05872. (495 aa)
PFL_4793ATPase, AAA family; Identified by match to protein family HMM PF07726; match to protein family HMM PF07728. (341 aa)
dctDC4-dicarboxylate transport transcriptional regulatory protein DctD; Identified by similarity to SP:P13632; match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM PF02954. (444 aa)
PFL_4864ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF03459; match to protein family HMM PF08402; Belongs to the ABC transporter superfamily. (369 aa)
gltLGlutamate/aspartate ABC transporter, ATP-binding protein GltL; Identified by similarity to SP:P0AAG3; match to protein family HMM PF00005. (244 aa)
PFL_4876Sigma-54 dependent DNA-binding response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM PF07728. (441 aa)
PFL_4888Sigma-54 dependent DNA-binding response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM PF07728. (465 aa)
lon_2Endopeptidase La; ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short- lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner. (806 aa)
PFL_5020Amino acid ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005. (264 aa)
PFL_5041Sigma-54 dependent transcriptional regulator; Identified by similarity to SP:P37013; match to protein family HMM PF00158; match to protein family HMM PF01590; match to protein family HMM PF02954; match to protein family HMM PF07728. (518 aa)
PFL_5114Transcriptional regulator, LuxR family; Identified by match to protein family HMM PF00196; match to protein family HMM PF07721. (911 aa)
potAPolyamine ABC transporter, ATP-binding protein; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Spermidine/putrescine importer (TC 3.A.1.11.1) family. (372 aa)
phuVHemin ABC transporter, ATP-binding protein PhuV; Part of the ABC transporter complex HmuTUV involved in hemin import. Responsible for energy coupling to the transport system. (255 aa)
cbrBTwo-component response regulator CbrB; Identified by similarity to GB:BAB20867.1; match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM PF07728. (475 aa)
clpBATP-dependent chaperone protein ClpB; Part of a stress-induced multi-chaperone system, it is involved in the recovery of the cell from heat-induced damage, in cooperation with DnaK, DnaJ and GrpE; Belongs to the ClpA/ClpB family. (854 aa)
pilRPutative sigma-54 dependent DNA-binding response regulator PilR; Identified by similarity to SP:Q00934; match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM PF02954. (444 aa)
PFL_5344ATP-binding cassette protein, ChvD family; Identified by match to protein family HMM PF00005; match to protein family HMM TIGR03719. (554 aa)
radADNA repair protein RadA; DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function. (455 aa)
hasDType 1 secretion system ATPase HasD; Identified by similarity to GB:BAA88492.1; match to protein family HMM PF00005; match to protein family HMM TIGR01842. (598 aa)
PFL_5468Sigma-54 dependent transcriptional regulator; Identified by similarity to SP:P28614; match to protein family HMM PF00158; match to protein family HMM PF01590; match to protein family HMM PF02954. (640 aa)
PFL_5494Putative ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005. (455 aa)
PFL_5529Efflux ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005. (236 aa)
prbDProline betaine ABC transporter, ATP-binding protein; Identified by similarity to GB:CAC46836.1; match to protein family HMM PF00005. (543 aa)
PFL_5635Sensory box-containing sigma-54 dependent transcriptional regulator; Identified by similarity to SP:Q46802; match to protein family HMM PF00158; match to protein family HMM PF00989; match to protein family HMM PF02954; match to protein family HMM PF07728; match to protein family HMM PF08448; match to protein family HMM TIGR00229. (457 aa)
potA-2Polyamine ABC transporter, ATP-binding protein; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system. (374 aa)
pilTTwitching motility protein PilT; Identified by similarity to SP:P24559; match to protein family HMM PF00437; match to protein family HMM TIGR01420. (344 aa)
ftsECell division ATP-binding protein FtsE; Part of the ABC transporter FtsEX involved in cellular division. (223 aa)
PFL_2926Sigma-54 dependent transcriptional regulator; Identified by similarity to SP:P17899; match to protein family HMM PF00158; match to protein family HMM PF07728. (358 aa)
PFL_5890Putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF08402; match to protein family HMM TIGR03265; Belongs to the ABC transporter superfamily. (358 aa)
potGPutrescine ABC transporter, ATP-binding protein; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system. (380 aa)
ssuBAliphatic sulfonates ABC transporter, ATP-binding protein; Part of the ABC transporter complex SsuABC involved in aliphatic sulfonates import. Responsible for energy coupling to the transport system. (268 aa)
PFL_5946Type II/IV secretion system protein; Identified by match to protein family HMM PF00437; match to protein family HMM PF05157. (592 aa)
PFL_5974Putative ABC transporter, ATP binding/permease protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF01061. (908 aa)
rhoTranscription termination factor Rho; Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA- dependent ATPase activity, and release of the mRNA from the DNA template. (419 aa)
PFL_5993ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005. (636 aa)
PFL_6022Mg-chelatase subunits D/I family, ComM subfamily protein; Identified by similarity to SP:P45049; match to protein family HMM PF01078; match to protein family HMM PF07728; match to protein family HMM TIGR00368. (497 aa)
aapPGeneral L-amino acid ABC transporter, ATP-binding protein AapP; Identified by similarity to SP:Q52815; match to protein family HMM PF00005. (254 aa)
PFL_2228ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005. (222 aa)
pedB2-phenylethanol ABC efflux transporter, ATP-binding protein PedB; Identified by similarity to GB:ABR57216.1; match to protein family HMM PF00005; match to protein family HMM TIGR03864. (252 aa)
PFL_2194Amino acid ABC transporter, ATP-binding protein; Identified by similarity to SP:Q52815; match to protein family HMM PF00005. (266 aa)
fleRSigma-54 dependent DNA-binding response regulator FleR; Identified by similarity to GB:AAA93530.1; match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM PF02954. (468 aa)
fliIFlagellum-specific ATP synthase FliI; Identified by similarity to SP:P26465; match to protein family HMM PF00006; match to protein family HMM TIGR01026; match to protein family HMM TIGR03496. (452 aa)
ccmAHeme ABC exporter, ATP-binding protein CcmA; Part of the ABC transporter complex CcmAB involved in the biogenesis of c-type cytochromes; once thought to export heme, this seems not to be the case, but its exact role is uncertain. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. CcmA exporter (TC 3.A.1.107) family. (211 aa)
PFL_1772ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005. (310 aa)
dnaXDNA polymerase III, gamma and tau subunit; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. (692 aa)
PFL_1935ABC transporter, permease/ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664; match to protein family HMM TIGR02204. (584 aa)
uupATP-binding cassette ATPase, Uup; Identified by similarity to SP:P43672; match to protein family HMM PF00005. (639 aa)
lolDLipoprotein-releasing system, ATP-binding protein LolD; Part of the ABC transporter complex LolCDE involved in the translocation of mature outer membrane-directed lipoproteins, from the inner membrane to the periplasmic chaperone, LolA. Responsible for the formation of the LolA-lipoprotein complex in an ATP-dependent manner. (232 aa)
PFL_2031ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005. (424 aa)
rbsARibose ABC transporter, ATP-binding protein; Based on sequence similarity with rbsA from E. coli (SP:P04983); identified by match to protein family HMM PF00005. (517 aa)
macB1Efflux ABC transporter, permease/ATP-binding protein; Part of the tripartite efflux system MacAB-TolC. MacB is a non-canonical ABC transporter that contains transmembrane domains (TMD), which form a pore in the inner membrane, and an ATP-binding domain (NBD), which is responsible for energy generation. Confers resistance against macrolides. (652 aa)
acoRAcetoin catabolism regulatory protein; A sigma-54 dependent transcriptional regulator; identified by similarity to SP:P28614; match to protein family HMM PF00158; match to protein family HMM PF01590; match to protein family HMM PF02954. (622 aa)
ttg2AToluene tolerance ABC efflux transporter, ATP-binding protein; Identified by similarity to GB:AAD17957.1; match to protein family HMM PF00005. (269 aa)
lptBLipopolysaccharide ABC transporter, ATP-binding protein LptB; Identified by similarity to SP:P0A9V1; match to protein family HMM PF00005. (241 aa)
PFL_0886ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF05992; match to protein family HMM PF06472. (575 aa)
dppDDipeptide ABC transporter, ATP-binding protein DppD; Identified by similarity to SP:P0AAG0; match to protein family HMM PF00005; match to protein family HMM PF08352; match to protein family HMM TIGR01727; Belongs to the ABC transporter superfamily. (322 aa)
dppFDipeptide ABC transporter, ATP-binding protein DppF; Identified by similarity to SP:P37313; match to protein family HMM PF00005; match to protein family HMM PF08352; match to protein family HMM TIGR01727; Belongs to the ABC transporter superfamily. (323 aa)
opuCAGlycine betaine/carnitine/choline ABC transporter, ATP-binding protein; Identified by similarity to SP:O34992; match to protein family HMM PF00005; match to protein family HMM PF00571; match to protein family HMM TIGR01186. (385 aa)
ftsHATP-dependent metalloprotease FtsH; Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins; Belongs to the AAA ATPase family. In the central section; belongs to the AAA ATPase family. (634 aa)
recDExodeoxyribonuclease V, alpha subunit; A helicase/nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and r [...] (693 aa)
PFL_0728ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005. (521 aa)
PFL_0695Type II/IV secretion system protein; Identified by match to protein family HMM PF00437. (424 aa)
PFL_0645Iron-chelate ABC transporter, FeCT family, ATP-binding protein; Identified by match to protein family HMM PF00005. (262 aa)
urtEUrea ABC transporter, ATP-binding protein UrtE; Identified by match to protein family HMM PF00005; match to protein family HMM TIGR03410. (232 aa)
livFHigh affinity branched-chain amino acid ABC transporter, ATP-binding protein LivF; Identified by similarity to SP:P22731; match to protein family HMM PF00005; Belongs to the ABC transporter superfamily. (238 aa)
livGHigh affinity branched-chain amino acid ABC transporter, ATP-binding protein LivG; Identified by similarity to SP:P0A9S7; match to protein family HMM PF00005. (290 aa)
msbALipid A export permease/ATP-binding protein MsbA; Involved in lipid A export and possibly also in glycerophospholipid export and for biogenesis of the outer membrane. Transmembrane domains (TMD) form a pore in the inner membrane and the ATP-binding domain (NBD) is responsible for energy generation. (601 aa)
hslUATP-dependent protease HslVU, ATPase subunit; ATPase subunit of a proteasome-like degradation complex; this subunit has chaperone activity. The binding of ATP and its subsequent hydrolysis by HslU are essential for unfolding of protein substrates subsequently hydrolyzed by HslV. HslU recognizes the N-terminal part of its protein substrates and unfolds these before they are guided to HslV for hydrolysis. (446 aa)
PFL_0417Amino acid ABC transporter, ATP-binding protein; Identified by similarity to SP:P0AAG3; match to protein family HMM PF00005. (244 aa)
hisVHistidine ABC transporter, ATP-binding protein; Identified by similarity to GB:AAF78099.1; match to protein family HMM PF00005. (276 aa)
glnGNitrogen regulation protein; Member of the two-component regulatory system NtrB/NtrC, which controls expression of the nitrogen-regulated (ntr) genes in response to nitrogen limitation. Phosphorylated NtrC binds directly to DNA and stimulates the formation of open promoter-sigma54-RNA polymerase complexes. (478 aa)
PFL_0343Amino acid ABC transporter, ATP-binding protein; Identified by similarity to SP:O30506; match to protein family HMM PF00005. (257 aa)
PFL_0300Sigma-54 dependent DNA-binding response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM PF07728. (468 aa)
tauBTaurine ABC transporter, ATP-binding protein; Part of the ABC transporter complex TauABC involved in taurine import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Taurine importer (TC 3.A.1.17.1) family. (264 aa)
PFL_0246Polar amino acid ABC transporter, ATP-binding protein; Identified by similarity to SP:P37774; match to protein family HMM PF00005. (253 aa)
metN1D-methionine ABC transporter, ATP-binding protein MetN; Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system. (374 aa)
PFL_0233Amino acid ABC transporter, ATP-binding protein; Identified by similarity to SP:P10346; match to protein family HMM PF00005. (260 aa)
PFL_0229Sigma-54-binding protein; Identified by similarity to SP:P17899; match to protein family HMM PF00158. (310 aa)
atsCSulfate ester ABC transporter, ATP-binding protein AtsC; Identified by similarity to GB:AAD31787.1; match to protein family HMM PF00005. (271 aa)
cysASulfate ABC transporter, ATP-binding protein CysA; Part of the ABC transporter complex CysAWTP involved in sulfate/thiosulfate import. Responsible for energy coupling to the transport system. (329 aa)
PFL_0139ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005. (286 aa)
PFL_0135Type I secretion system ATPase; Identified by match to protein family HMM PF00005; match to protein family HMM TIGR03375. (717 aa)
PFL_0099ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005. (267 aa)
algBAlginate biosynthesis transcriptional regulatory protein AlgB; Identified by similarity to SP:P23747; match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM PF07728. (448 aa)
znuCHigh-affinity zinc ABC transporter, ATP-binding protein ZnuC; Part of the ABC transporter complex ZnuABC involved in zinc import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Zinc importer (TC 3.A.1.15.5) family. (261 aa)
metN2D-methionine ABC transporter, ATP-binding protein MetN; Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system. (335 aa)
dnaAChromosomal replication initiator protein DnaA; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids. (513 aa)
tagTPutative Lol-like lipoprotein-translocating system, ATP-binding protein TagT; See Hsu et. al. 2009 (PMID: 19400797) for more information; identified by similarity to GB:AAG03463.1; match to protein family HMM PF00005. (238 aa)
clpVType VI secretion ATPase ClpV; See Hsu et. al. 2009 (PMID: 19400797) for more information; identified by similarity to SP:Q9I742; match to protein family HMM PF00004; match to protein family HMM PF02861; match to protein family HMM PF07724; match to protein family HMM PF07728; match to protein family HMM TIGR03345; Belongs to the ClpA/ClpB family. (891 aa)
pstBPhosphate ABC transporter, ATP-binding protein PstB; Part of the ABC transporter complex PstSACB involved in phosphate import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Phosphate importer (TC 3.A.1.7) family. (277 aa)
mntAmanganese(II)/zinc(II) ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005. (221 aa)
atpDATP synthase F1, beta subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits; Belongs to the ATPase alpha/beta chains family. (458 aa)
pltJABC transporter, ATP binding/permease protein PltJ; Previously identified and sequenced (PMID 16269724; Brodhagen et al., 2005) called pltI in Pseudomonas sp. M18 (PMID: 16581203); identified by similarity to GB:AAY59067.1; match to protein family HMM PF00005. (589 aa)
gspEGeneral secretory pathway protein E; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins. (473 aa)
PFL_2623Branched-chain amino acid ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005. (255 aa)
PFL_2619Branched-chain amino acid ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005. (258 aa)
PFL_2594Ribose ABC transporter, ATP-binding protein; Part of an ABC transporter complex involved in carbohydrate import. Could be involved in ribose, galactose and/or methyl galactoside import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Carbohydrate importer 2 (CUT2) (TC 3.A.1.2) family. (515 aa)
PFL_2566Sigma-54 dependent transcriptional regulator; Identified by similarity to GB:AAF18103.1; match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM PF07728; match to protein family HMM PF08448. (437 aa)
PFL_2553Identified by match to protein family HMM PF00005; match to protein family HMM PF00528. (690 aa)
PFL_2357Amino acid ABC transporter, ATP-binding protein; Identified by similarity to SP:P27675; match to protein family HMM PF00005. (254 aa)
potG2Putrescine ABC transporter, ATP-binding protein; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system. (380 aa)
rtcRSigma-54 dependent transcriptional regulator RtcR; Identified by similarity to SP:P38035; match to protein family HMM PF00158; match to protein family HMM PF06956; match to protein family HMM PF07728. (530 aa)
recARecA protein; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. (350 aa)
hisPHistidine ABC transporter, ATP-binding protein HisP; Identified by similarity to SP:P07109; match to protein family HMM PF00005. (251 aa)
braGBranched-chain amino acid ABC transporter, ATP-binding protein BraG; Identified by similarity to SP:P21630; match to protein family HMM PF00005; Belongs to the ABC transporter superfamily. (233 aa)
braFBranched-chain amino acid ABC transporter, ATP-binding protein BraF; Identified by similarity to SP:P21629; match to protein family HMM PF00005. (255 aa)
ssuB2Aliphatic sulfonates ABC transporter, ATP-binding protein; Part of the ABC transporter complex SsuABC involved in aliphatic sulfonates import. Responsible for energy coupling to the transport system. (259 aa)
PFL_1517ATPase, AAA family; Identified by match to protein family HMM PF00004; match to protein family HMM PF07728. (281 aa)
hrpAATP-dependent helicase HrpA; Identified by similarity to SP:P43329; match to protein family HMM PF00271; match to protein family HMM PF04408; match to protein family HMM PF07717; match to protein family HMM TIGR01967. (1303 aa)
PFL_1541ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005. (610 aa)
phhRSigma-54 dependent transcriptional regulator PhhR; Identified by similarity to GB:AAC44635.1; match to protein family HMM PF00158; match to protein family HMM PF01842. (522 aa)
fleQSigma 54 dependent transcriptional regulator FleQ; Identified by similarity to GB:AAG47964.1; match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM PF06490. (491 aa)
PFL_2284Amino acid ABC transporter, ATP-binding protein; Identified by similarity to SP:P37774; match to protein family HMM PF00005. (248 aa)
Your Current Organism:
Pseudomonas protegens
NCBI taxonomy Id: 220664
Other names: P. protegens Pf-5, Pseudomonas fluorescens Pf-5, Pseudomonas protegens Pf-5, Pseudomonas protegens str. Pf-5, Pseudomonas protegens strain Pf-5, Pseudomonas sp. Pf-5
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