STRINGSTRING
choS choS choQ choQ gshR1 gshR1 opuA opuA opuB opuB opuC opuC opuD opuD rluA rluA cfa2 cfa2 gshR4 gshR4 bsh1 bsh1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
choSGlycine betaine/carnitine/choline ABC transporter, substrate binding and permease protein. (508 aa)
choQGlycine betaine/carnitine/choline ABC transporter, ATP-binding protein. (323 aa)
gshR1Glutathione reductase. (443 aa)
opuAGlycine betaine/carnitine/choline ABC transporter, ATP-binding protein. (398 aa)
opuBGlycine betaine/carnitine/choline ABC transporter, permease protein. (209 aa)
opuCGlycine betaine/carnitine/choline ABC transporter, substrate binding protein. (311 aa)
opuDGlycine betaine/carnitine/choline ABC transporter, permease protein. (217 aa)
rluARibosomal large subunit pseudouridylate synthase. (300 aa)
cfa2Cyclopropane-fatty-acyl-phospholipid synthase. (397 aa)
gshR4Glutathione reductase. (444 aa)
bsh1Choloylglycine hydrolase; The enzyme catalyzes the degradation of conjugated bile acids in the mammalian gut; Belongs to the peptidase C59 family. (324 aa)
Your Current Organism:
Lactobacillus plantarum
NCBI taxonomy Id: 220668
Other names: L. plantarum WCFS1, Lactobacillus plantarum WCFS1, Lactobacillus plantarum str. WCFS1, Lactobacillus plantarum strain WCFS1
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