(14 nodes) PAS domain superfamily network (Oceanobacillus iheyensis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	OB0588	Protein kinase; CDS_ID OB0588. (264 aa)
	OB0813	Transcriptional regulator; CDS_ID OB0813. (573 aa)
	OB1257	Methyl-accepting chemotaxis protein; CDS_ID OB1257. (302 aa)
	OB1348	Transcriptional regulator; CDS_ID OB1348. (452 aa)
	OB1359	Nitrogen fixation positive activator (partial); CDS_ID OB1359. (539 aa)
	kinC	Sporulation kinase C (sensor kinase); CDS_ID OB1680. (364 aa)
	OB1818	Two-component sensor histidine kinase; CDS_ID OB1818. (584 aa)
	OB1870	Transcriptional regulator (sigma-L-dependent); CDS_ID OB1870. (683 aa)
	OB2164	Two-component sensor histidine kinase involved in phosphate regulation; CDS_ID OB2164. (453 aa)
	OB2629	Transcriptional regulator; CDS_ID OB2629. (466 aa)
	OB2739	Transcriptional regulator; CDS_ID OB2739. (594 aa)
	OB3220	Two-component sensor histidine kinase; CDS_ID OB3220. (533 aa)
	OB3251	Two-component sensor histidine kinase; CDS_ID OB3251. (528 aa)
	OB3451	Two-component sensor histidine kinase; CDS_ID OB3451. (612 aa)

Your Current Organism:

Oceanobacillus iheyensis

NCBI taxonomy Id: 221109
Other names: O. iheyensis HTE831, Oceanobacillus iheyensis HTE831, Oceanobacillus iheyensis str. HTE831, Oceanobacillus iheyensis strain HTE831, marine firmicute HTE831

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
OB0588	OB1257	gene:10732792	gene:10733497	Protein kinase; CDS_ID OB0588.	Methyl-accepting chemotaxis protein; CDS_ID OB1257.	0.662
OB0588	OB1359	gene:10732792	gene:10733599	Protein kinase; CDS_ID OB0588.	Nitrogen fixation positive activator (partial); CDS_ID OB1359.	0.915
OB0588	OB1818	gene:10732792	gene:10734058	Protein kinase; CDS_ID OB0588.	Two-component sensor histidine kinase; CDS_ID OB1818.	0.444
OB0588	OB2164	gene:10732792	gene:10734412	Protein kinase; CDS_ID OB0588.	Two-component sensor histidine kinase involved in phosphate regulation; CDS_ID OB2164.	0.695
OB0588	OB3451	gene:10732792	gene:10735703	Protein kinase; CDS_ID OB0588.	Two-component sensor histidine kinase; CDS_ID OB3451.	0.408
OB0813	OB1359	gene:10733034	gene:10733599	Transcriptional regulator; CDS_ID OB0813.	Nitrogen fixation positive activator (partial); CDS_ID OB1359.	0.424
OB1257	OB0588	gene:10733497	gene:10732792	Methyl-accepting chemotaxis protein; CDS_ID OB1257.	Protein kinase; CDS_ID OB0588.	0.662
OB1257	OB1359	gene:10733497	gene:10733599	Methyl-accepting chemotaxis protein; CDS_ID OB1257.	Nitrogen fixation positive activator (partial); CDS_ID OB1359.	0.956
OB1348	OB1359	gene:10733588	gene:10733599	Transcriptional regulator; CDS_ID OB1348.	Nitrogen fixation positive activator (partial); CDS_ID OB1359.	0.424
OB1359	OB0588	gene:10733599	gene:10732792	Nitrogen fixation positive activator (partial); CDS_ID OB1359.	Protein kinase; CDS_ID OB0588.	0.915
OB1359	OB0813	gene:10733599	gene:10733034	Nitrogen fixation positive activator (partial); CDS_ID OB1359.	Transcriptional regulator; CDS_ID OB0813.	0.424
OB1359	OB1257	gene:10733599	gene:10733497	Nitrogen fixation positive activator (partial); CDS_ID OB1359.	Methyl-accepting chemotaxis protein; CDS_ID OB1257.	0.956
OB1359	OB1348	gene:10733599	gene:10733588	Nitrogen fixation positive activator (partial); CDS_ID OB1359.	Transcriptional regulator; CDS_ID OB1348.	0.424
OB1359	OB1818	gene:10733599	gene:10734058	Nitrogen fixation positive activator (partial); CDS_ID OB1359.	Two-component sensor histidine kinase; CDS_ID OB1818.	0.525
OB1359	OB1870	gene:10733599	gene:10734110	Nitrogen fixation positive activator (partial); CDS_ID OB1359.	Transcriptional regulator (sigma-L-dependent); CDS_ID OB1870.	0.424
OB1359	OB2164	gene:10733599	gene:10734412	Nitrogen fixation positive activator (partial); CDS_ID OB1359.	Two-component sensor histidine kinase involved in phosphate regulation; CDS_ID OB2164.	0.648
OB1359	OB2629	gene:10733599	gene:10734881	Nitrogen fixation positive activator (partial); CDS_ID OB1359.	Transcriptional regulator; CDS_ID OB2629.	0.424
OB1359	OB2739	gene:10733599	gene:10734991	Nitrogen fixation positive activator (partial); CDS_ID OB1359.	Transcriptional regulator; CDS_ID OB2739.	0.424
OB1359	OB3451	gene:10733599	gene:10735703	Nitrogen fixation positive activator (partial); CDS_ID OB1359.	Two-component sensor histidine kinase; CDS_ID OB3451.	0.525
OB1818	OB0588	gene:10734058	gene:10732792	Two-component sensor histidine kinase; CDS_ID OB1818.	Protein kinase; CDS_ID OB0588.	0.444

page 1 of 2

Server load: low (16%) [HD]

Permalink

Network

Neighborhood

Experiments

Fusion

Textmining

Cooccurrence

Databases

Coexpression

© STRING Consortium 2025

Credits

Access

Info

About