(23 nodes) Mixed, incl. Alpha/beta hydrolase family, and Serine aminopeptidase, S33 network (Mycobacterium chimaera)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AOS90516.1	Alpha/beta hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (323 aa)
	APD83867.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (172 aa)
	APD84468.1	Peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (223 aa)
	APD84041.1	Alpha/beta hydrolase; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (308 aa)
	AOS91789.1	Alpha/beta hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (283 aa)
	AOS92122.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (320 aa)
	AOS92123.1	TetR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (223 aa)
	AOS92124.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (126 aa)
	AOS92127.1	MATE family efflux transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (436 aa)
	AOS93310.1	Alpha/beta hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (321 aa)
	AOS93531.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (187 aa)
	AOS93532.1	ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (195 aa)
	AOS93533.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (127 aa)
	AOS93534.1	Dynein regulation protein LC7; Derived by automated computational analysis using gene prediction method: Protein Homology. (133 aa)
	APD84373.1	Alpha/beta hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (290 aa)
	AOS94640.1	Alpha/beta hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (268 aa)
	AOS93742.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (60 aa)
	APD84548.1	Alpha/beta hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (279 aa)
	AOS94188.1	SAM-dependent methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (203 aa)
	AOS94189.1	NAD-dependent epimerase; Derived by automated computational analysis using gene prediction method: Protein Homology. (281 aa)
	AOS94190.1	Thioesterase; Derived by automated computational analysis using gene prediction method: Protein Homology. (204 aa)
	AOS94214.1	TetR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (202 aa)
	AOS94215.1	Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (276 aa)

Your Current Organism:

Mycobacterium chimaera

NCBI taxonomy Id: 222805
Other names: CCUG 50989, CIP 107892, DSM 44623, JCM 14737, M. chimaera, Mycobacterium chimaera Tortoli et al. 2004, NCTC 13781, personal::FI-01069, strain FI-01069

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AOS90516.1	AOS91789.1	AN480_02040	AN480_10575	Alpha/beta hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Alpha/beta hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.778
AOS90516.1	AOS93310.1	AN480_02040	AN480_20550	Alpha/beta hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Alpha/beta hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.647
AOS90516.1	AOS94640.1	AN480_02040	AN480_23335	Alpha/beta hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Alpha/beta hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.767
AOS90516.1	APD83867.1	AN480_02040	AN480_02045	Alpha/beta hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.887
AOS90516.1	APD84373.1	AN480_02040	AN480_23175	Alpha/beta hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Alpha/beta hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.601
AOS90516.1	APD84468.1	AN480_02040	AN480_02050	Alpha/beta hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.727
AOS91789.1	AOS90516.1	AN480_10575	AN480_02040	Alpha/beta hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Alpha/beta hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.778
AOS92122.1	AOS92123.1	AN480_12770	AN480_12775	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	TetR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.776
AOS92122.1	AOS92124.1	AN480_12770	AN480_12780	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.555
AOS92122.1	AOS94215.1	AN480_12770	AN480_26430	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.447
AOS92122.1	AOS94640.1	AN480_12770	AN480_23335	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Alpha/beta hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.501
AOS92122.1	APD84041.1	AN480_12770	AN480_09240	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Alpha/beta hydrolase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.617
AOS92123.1	AOS92122.1	AN480_12775	AN480_12770	TetR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.776
AOS92123.1	AOS92124.1	AN480_12775	AN480_12780	TetR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.559
AOS92124.1	AOS92122.1	AN480_12780	AN480_12770	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.555
AOS92124.1	AOS92123.1	AN480_12780	AN480_12775	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	TetR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.559
AOS93310.1	AOS90516.1	AN480_20550	AN480_02040	Alpha/beta hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Alpha/beta hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.647
AOS93310.1	AOS94215.1	AN480_20550	AN480_26430	Alpha/beta hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.552
AOS93310.1	APD84041.1	AN480_20550	AN480_09240	Alpha/beta hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Alpha/beta hydrolase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.431
AOS93310.1	APD84373.1	AN480_20550	AN480_23175	Alpha/beta hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Alpha/beta hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.606

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