(14 nodes) Ribosome network (Neorickettsia sennetsu)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	rpsP	Ribosomal protein S16; Identified by match to protein family HMM PF00886; match to protein family HMM TIGR00002; Belongs to the bacterial ribosomal protein bS16 family. (85 aa)
	rpmI	Ribosomal protein L35; Belongs to the bacterial ribosomal protein bL35 family. (68 aa)
	rplT	Ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. (117 aa)
	rpsJ	Ribosomal protein S10; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family. (103 aa)
	rplD	Ribosomal protein L4; One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome. (214 aa)
	rpsQ	Ribosomal protein S17; Identified by match to protein family HMM PF00366. (74 aa)
	rplN	Ribosomal protein L14; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family. (119 aa)
	rplQ	Ribosomal protein L17; Identified by similarity to SP:P02416; match to protein family HMM PF01196; match to protein family HMM TIGR00059. (117 aa)
	rplY	Ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5; This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance. Belongs to the bacterial ribosomal protein bL25 family. CTC subfamily. (194 aa)
	rpmB	Ribosomal protein L28; Identified by match to protein family HMM PF00830; match to protein family HMM TIGR00009; Belongs to the bacterial ribosomal protein bL28 family. (102 aa)
	rplJ	50S ribosomal protein L10; Identified by match to protein family HMM PF00466. (174 aa)
	rpsG	Ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family. (175 aa)
	rpsT	Ribosomal protein S20; Binds directly to 16S ribosomal RNA. (87 aa)
	NSE_0927	Conserved hypothetical protein; Identified by similarity to GB:AAS14072.1. (44 aa)

Your Current Organism:

Neorickettsia sennetsu

NCBI taxonomy Id: 222891
Other names: N. sennetsu str. Miyayama, Neorickettsia sennetsu Miyayama, Neorickettsia sennetsu str. Miyayama

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
NSE_0927	rplD	NSE_0927	NSE_0267	Conserved hypothetical protein; Identified by similarity to GB:AAS14072.1.	Ribosomal protein L4; One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome.	0.999
NSE_0927	rplJ	NSE_0927	NSE_0680	Conserved hypothetical protein; Identified by similarity to GB:AAS14072.1.	50S ribosomal protein L10; Identified by match to protein family HMM PF00466.	0.999
NSE_0927	rplN	NSE_0927	NSE_0276	Conserved hypothetical protein; Identified by similarity to GB:AAS14072.1.	Ribosomal protein L14; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family.	0.999
NSE_0927	rplQ	NSE_0927	NSE_0290	Conserved hypothetical protein; Identified by similarity to GB:AAS14072.1.	Ribosomal protein L17; Identified by similarity to SP:P02416; match to protein family HMM PF01196; match to protein family HMM TIGR00059.	0.999
NSE_0927	rplT	NSE_0927	NSE_0215	Conserved hypothetical protein; Identified by similarity to GB:AAS14072.1.	Ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.	0.999
NSE_0927	rplY	NSE_0927	NSE_0306	Conserved hypothetical protein; Identified by similarity to GB:AAS14072.1.	Ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5; This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance. Belongs to the bacterial ribosomal protein bL25 family. CTC subfamily.	0.999
NSE_0927	rpmB	NSE_0927	NSE_0321	Conserved hypothetical protein; Identified by similarity to GB:AAS14072.1.	Ribosomal protein L28; Identified by match to protein family HMM PF00830; match to protein family HMM TIGR00009; Belongs to the bacterial ribosomal protein bL28 family.	0.999
NSE_0927	rpmI	NSE_0927	NSE_0214	Conserved hypothetical protein; Identified by similarity to GB:AAS14072.1.	Ribosomal protein L35; Belongs to the bacterial ribosomal protein bL35 family.	0.999
NSE_0927	rpsG	NSE_0927	NSE_0688	Conserved hypothetical protein; Identified by similarity to GB:AAS14072.1.	Ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family.	0.999
NSE_0927	rpsJ	NSE_0927	NSE_0265	Conserved hypothetical protein; Identified by similarity to GB:AAS14072.1.	Ribosomal protein S10; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family.	0.999
NSE_0927	rpsP	NSE_0927	NSE_0123	Conserved hypothetical protein; Identified by similarity to GB:AAS14072.1.	Ribosomal protein S16; Identified by match to protein family HMM PF00886; match to protein family HMM TIGR00002; Belongs to the bacterial ribosomal protein bS16 family.	0.999
NSE_0927	rpsQ	NSE_0927	NSE_0275	Conserved hypothetical protein; Identified by similarity to GB:AAS14072.1.	Ribosomal protein S17; Identified by match to protein family HMM PF00366.	0.999
NSE_0927	rpsT	NSE_0927	NSE_0792	Conserved hypothetical protein; Identified by similarity to GB:AAS14072.1.	Ribosomal protein S20; Binds directly to 16S ribosomal RNA.	0.999
rplD	NSE_0927	NSE_0267	NSE_0927	Ribosomal protein L4; One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome.	Conserved hypothetical protein; Identified by similarity to GB:AAS14072.1.	0.999
rplD	rplJ	NSE_0267	NSE_0680	Ribosomal protein L4; One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome.	50S ribosomal protein L10; Identified by match to protein family HMM PF00466.	0.999
rplD	rplN	NSE_0267	NSE_0276	Ribosomal protein L4; One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome.	Ribosomal protein L14; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family.	0.999
rplD	rplQ	NSE_0267	NSE_0290	Ribosomal protein L4; One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome.	Ribosomal protein L17; Identified by similarity to SP:P02416; match to protein family HMM PF01196; match to protein family HMM TIGR00059.	0.999
rplD	rplT	NSE_0267	NSE_0215	Ribosomal protein L4; One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome.	Ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.	0.999
rplD	rplY	NSE_0267	NSE_0306	Ribosomal protein L4; One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome.	Ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5; This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance. Belongs to the bacterial ribosomal protein bL25 family. CTC subfamily.	0.999
rplD	rpmB	NSE_0267	NSE_0321	Ribosomal protein L4; One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome.	Ribosomal protein L28; Identified by match to protein family HMM PF00830; match to protein family HMM TIGR00009; Belongs to the bacterial ribosomal protein bL28 family.	0.999