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| | dnaN | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] (367 aa) |
| | rpoZ | DNA-directed RNA polymerase, omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. (87 aa) |
| | AAO53630.1 | Conserved protein of unknown function; See PMID:20190049 for expression data; identified by match to PFAM protein family HMM PF03755. (287 aa) |
| | rph | Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation. (240 aa) |
| | tsaC | SUA5/yciO/yrdC family domain protein; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Catalyzes the conversion of L-threonine, HCO(3)(-)/CO(2) and ATP to give threonylcarbamoyl-AMP (TC-AMP) as the acyladenylate intermediate, with the release of diphosphate. (185 aa) |
| | AAO53884.1 | GGDEF domain protein; See PMID:20190049 for expression data; identified by match to TIGR protein family HMM TIGR01690. (677 aa) |
| | polI | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. (925 aa) |
| | thiI | Thiamin biosynthesis protein ThiI; Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS. (484 aa) |
| | coaD | Pantetheine-phosphate adenylyltransferase; Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate. Belongs to the bacterial CoaD family. (159 aa) |
| | AAO54014.1 | Exonuclease, putative; See PMID:20190049 for expression data. (237 aa) |
| | AAO54015.1 | Nucleotidyltransferase, putative; See PMID:20190049 for expression data. (622 aa) |
| | AAO54048.1 | GGDEF domain protein; See PMID:20190049 for expression data. (431 aa) |
| | dnaG | DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. (652 aa) |
| | cca | tRNA nucleotidyltransferase; Catalyzes the addition and repair of the essential 3'- terminal CCA sequence in tRNAs without using a nucleic acid template. Adds these three nucleotides in the order of C, C, and A to the tRNA nucleotide-73, using CTP and ATP as substrates and producing inorganic pyrophosphate. Also shows phosphatase, 2'-nucleotidase and 2',3'-cyclic phosphodiesterase activities. These phosphohydrolase activities are probably involved in the repair of the tRNA 3'-CCA terminus degraded by intracellular RNases. (409 aa) |
| | AAO54098.1 | Nucleotidyltransferase family protein; See PMID:20190049 for expression data. (210 aa) |
| | AAO54133.1 | impB/mucB/samB family protein; Similar to GB:U10552, and PID:504482; identified by sequence similarity; putative. (366 aa) |
| | rpoB | DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1357 aa) |
| | rpoC | DNA-directed RNA polymerase, beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1399 aa) |
| | rpoA | DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (333 aa) |
| | AAO54248.1 | Lipopolysaccharide biosynthesis protein, putative; Similar to GP:13274368, and GP:13274368; identified by sequence similarity; putative. (253 aa) |
| | ribF | Riboflavin biosynthesis protein RibF; See PMID:20190049 for expression data; Belongs to the ribF family. (308 aa) |
| | pcnB | poly(A) polymerase; Adds poly(A) tail to the 3' end of many RNAs, which usually targets these RNAs for decay. Plays a significant role in the global control of gene expression, through influencing the rate of transcript degradation, and in the general RNA quality control. Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family. (467 aa) |
| | AAO54537.1 | GGDEF domain protein; Similar to GB:L03357, SP:P07949, SP:P10644, PID:1658306, PID:337358, and PID:490118; identified by sequence similarity; putative. (413 aa) |
| | AAO54568.1 | Conserved protein of unknown function; See PMID:20190049 for expression data; similar to GP:15980343; identified by sequence similarity; putative. (153 aa) |
| | AAO54571.1 | Sensory box protein; See PMID:20190049 for expression data; identified by match to TIGR protein family HMM TIGR00229. (160 aa) |
| | rfbA | Glucose-1-phosphate thymidylyltransferase; Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis. Belongs to the glucose-1-phosphate thymidylyltransferase family. (296 aa) |
| | moeB | Molybdopterin biosynthesis protein MoeB; See PMID:20190049 for expression data. (259 aa) |
| | AAO54755.1 | Hypothetical protein; Similar to GB:X63522, GB:M84820, GB:X65463, GB:X66424, GB:Z65589, SP:P28702, and PID:35311; identified by sequence similarity; putative. (36 aa) |
| | algA | Alginate biosynthesis protein AlgA; Produces a precursor for alginate polymerization. The alginate layer provides a protective barrier against host immune defenses and antibiotics (By similarity). (483 aa) |
| | holC | DNA polymerase III, chi subunit; See PMID:20190049 for expression data. (142 aa) |
| | AAO54827.1 | Conserved protein of unknown function; See PMID:20190049 for expression data. (79 aa) |
| | AAO54829.1 | GGDEF domain protein; See PMID:20190049 for expression data. (502 aa) |
| | AAO55020.1 | Response regulator/GGDEF domain protein; See PMID:20190049 for expression data. (334 aa) |
| | glnD | [protein-pII] uridylyltransferase; Modifies, by uridylylation and deuridylylation, the PII regulatory proteins (GlnB and homologs), in response to the nitrogen status of the cell that GlnD senses through the glutamine level. Under low glutamine levels, catalyzes the conversion of the PII proteins and UTP to PII-UMP and PPi, while under higher glutamine levels, GlnD hydrolyzes PII-UMP to PII and UMP (deuridylylation). Thus, controls uridylylation state and activity of the PII proteins, and plays an important role in the regulation of nitrogen assimilation and metabolism. (898 aa) |
| | cdsA-1 | Phosphatidate cytidylyltransferase; See PMID:20190049 for expression data; Belongs to the CDS family. (271 aa) |
| | dnaE | DNA polymerase III, alpha subunit; See PMID:20190049 for expression data. (1173 aa) |
| | ispD | 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; Catalyzes the formation of 4-diphosphocytidyl-2-C-methyl-D- erythritol from CTP and 2-C-methyl-D-erythritol 4-phosphate (MEP). (236 aa) |
| | AAO55136.1 | GGDEF domain protein; Similar to GB:X59244, GB:X52358, SP:P17038, SP:P17040, SP:P28160, PID:184450, PID:38032, PID:930090, and PID:930092; identified by sequence similarity; putative. (358 aa) |
| | cobP | Cobinamide kinase/cobinamide phosphate guanylyltransferase; Catalyzes ATP-dependent phosphorylation of adenosylcobinamide and addition of GMP to adenosylcobinamide phosphate. (173 aa) |
| | AAO55259.1 | GGDEF domain protein; Identified by match to TIGR protein family HMM TIGR00254. (308 aa) |
| | fliA | Motility sigma factor FliA; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor controls the expression of flagella-related genes; Belongs to the sigma-70 factor family. FliA subfamily. (246 aa) |
| | AAO55593.1 | Hypothetical protein; Similar to GP:2688957; identified by sequence similarity; putative. (81 aa) |
| | AAO55682.1 | Group II intron, maturase; This gene assignment is based in part on extensive secondary structures observed for the flanking sequences using the nucleic acid folding program MFOLD; similar to GP:2317798; identified by sequence similarity; putative. (455 aa) |
| | mobA | Molybdopterin-guanine dinucleotide biosynthesis protein A; Transfers a GMP moiety from GTP to Mo-molybdopterin (Mo-MPT) cofactor (Moco or molybdenum cofactor) to form Mo-molybdopterin guanine dinucleotide (Mo-MGD) cofactor; Belongs to the MobA family. (201 aa) |
| | moaB | Molybdenum cofactor biosynthesis protein B; May be involved in the biosynthesis of molybdopterin. Belongs to the MoaB/Mog family. (179 aa) |
| | polB | DNA polymerase II; Similar to SP:P21189; identified by sequence similarity; putative. (787 aa) |
| | AAO56160.1 | Conserved hypothetical protein; Similar to GP:17430796, and GP:17430796; identified by sequence similarity; putative. (197 aa) |
| | AAO56294.1 | Conserved hypothetical protein; Identified by match to PFAM protein family HMM PF00817. (487 aa) |
| | dnaE2 | DNA polymerase III, alpha subunit, putative; DNA polymerase involved in damage-induced mutagenesis and translesion synthesis (TLS). It is not the major replicative DNA polymerase. (1031 aa) |
| | AAO56307.1 | GGDEF domain protein; Identified by match to PFAM protein family HMM PF04186. (385 aa) |
| | galU | UTP-glucose-1-phosphate uridylyltransferase; See PMID:20190049 for expression data. (279 aa) |
| | AAO56630.1 | Nicotinamide-nucleotide adenylyltransferase, putative; Similar to GB:M60018, and PID:143949; identified by sequence similarity; putative. (178 aa) |
| | AAO56678.1 | Sensor histidine kinase; See PMID:20190049 for expression data; identified by match to PFAM protein family HMM PF00512. (438 aa) |
| | AAO56722.1 | GGDEF domain protein; Identified by match to TIGR protein family HMM TIGR00254. (304 aa) |
| | AAO56804.1 | Group II intron, maturase; This gene assignment is based in part on extensive secondary structures observed for the flanking sequences using the nucleic acid folding program MFOLD; similar to GP:15141190, and GP:2317798; identified by sequence similarity; putative. (455 aa) |
| | AAO56939.1 | DNA ligase, ATP-dependent, putative; Similar to GP:15158571; identified by sequence similarity; putative. (851 aa) |
| | AAO57005.1 | Mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase PslB; See PMID:20190049 for expression data; similar to GP:3510759; identified by sequence similarity; putative; Belongs to the mannose-6-phosphate isomerase type 2 family. (485 aa) |
| | dnaZX | DNA polymerase III, subunits gamma and tau; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. (743 aa) |
| | dnaQ | DNA polymerase III, epsilon subunit; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'- 5' exonuclease. (257 aa) |
| | AAO57265.1 | GGDEF domain protein; See PMID:20190049 for expression data; identified by match to TIGR protein family HMM TIGR00254. (355 aa) |
| | holB | DNA polymerase III, delta prime subunit; See PMID:20190049 for expression data; similar to SP:P28631, GB:Z32564, GB:U08470, GB:U08471, GB:Z32633, SP:P14207, SP:P41439, PID:473236, PID:474061, PID:478885, and PID:478887; identified by sequence similarity; putative. (328 aa) |
| | kdsB | 3-deoxy-D-manno-octulosonate cytidylyltransferase; Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria. (254 aa) |
| | AAO57394.1 | Retron reverse transcriptase; This ORF may be part of multicopy single-stranded DNA (msDNA)-producing retroelement or retron - RM; see PMID:20190049 for expression data; similar to GP:8100799, GB:X00493, and PID:39088; identified by sequence similarity; putative. (393 aa) |
| | dinP | DNA polymerase IV; Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII. (353 aa) |
| | cysN/C | Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; May be the GTPase, regulating ATP sulfurylase activity. Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. CysN/NodQ subfamily. (632 aa) |
| | cysD | Sulfate adenylate transferase, subunit 2; Similar to GP:11992146, and SP:P21156; identified by sequence similarity; putative; see PMID:20190049 for expression data; similar to GP:11992146, and SP:P21156, identified by sequence similarity, putative. (305 aa) |
| | rpoN | RNA polymerase sigma-54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. (497 aa) |
| | pnp | Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction. (701 aa) |
| | AAO58111.1 | Exonuclease, putative; See PMID:20190049 for expression data. (204 aa) |
| | AAO58214.1 | GGDEF domain protein; Similar to GP:15156086; identified by sequence similarity; putative. (366 aa) |
| | holA | DNA polymerase III, delta subunit; See PMID:20190049 for expression data. (345 aa) |
| | nadD | Nicotinate (nicotinamide) nucleotide adenylyltransferase; Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD). (222 aa) |
| | AAO58266.1 | Response regulator; See PMID:20190049 for expression data. (551 aa) |
| | hldE | Lipopolysaccharide biosynthesis protein RfaE; Catalyzes the phosphorylation of D-glycero-D-manno-heptose 7- phosphate at the C-1 position to selectively form D-glycero-beta-D- manno-heptose-1,7-bisphosphate; In the C-terminal section; belongs to the cytidylyltransferase family. (474 aa) |
| | glnE | Glutamate-ammonia-ligase adenylyltransferase; Involved in the regulation of glutamine synthetase GlnA, a key enzyme in the process to assimilate ammonia. When cellular nitrogen levels are high, the C-terminal adenylyl transferase (AT) inactivates GlnA by covalent transfer of an adenylyl group from ATP to specific tyrosine residue of GlnA, thus reducing its activity. Conversely, when nitrogen levels are low, the N-terminal adenylyl removase (AR) activates GlnA by removing the adenylyl group by phosphorolysis, increasing its activity. The regulatory region of GlnE binds the signal transd [...] (985 aa) |
| | selO | Conserved hypothetical protein; Catalyzes the transfer of adenosine 5'-monophosphate (AMP) to Ser, Thr or Tyr residues of target proteins (AMPylation). (487 aa) |
| | mdcG | Malonate decarboxylase subunit, putative; Transfers 2'-(5-triphosphoribosyl)-3'-dephosphocoenzyme-A to the apo-[acyl-carrier-protein] of the malonate decarboxylase to yield holo-[acyl-carrier-protein]; Belongs to the MdcG family. (211 aa) |
| | cdsA-2 | Phosphatidate cytidylyltransferase; Identified by match to PFAM protein family HMM PF01148. (309 aa) |
| | glmU | UDP-N-acetylglucosamine pyrophosphorylase; Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP-GlcNAc). The C- terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N- acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5-monophosphate (from uridine 5- triphosphate), a reaction catalyzed by the N-terminal domain. In the C-terminal section; belongs to the transferase hexapeptide repeat family. (455 aa) |
