Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| antE | yfhS | BSU25220 | BSU08640 | Hypothetical protein; Evidence 5: No homology to any previously reported sequences; PubMedId: 9864351. | Conserved hypothetical protein; Evidence 4: Homologs of previously reported genes of unknown function; PubMedId: 10463184. | 0.919 |
| antE | yqfU | BSU25220 | BSU25110 | Hypothetical protein; Evidence 5: No homology to any previously reported sequences; PubMedId: 9864351. | Putative integral inner membrane protein; Evidence 3: Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type pm: putative membrane component. | 0.911 |
| antE | yqxD | BSU25220 | BSU25230 | Hypothetical protein; Evidence 5: No homology to any previously reported sequences; PubMedId: 9864351. | Conserved hypothetical protein; Evidence 4: Homologs of previously reported genes of unknown function; PubMedId: 9387153; Belongs to the UPF0178 family. | 0.848 |
| antE | yxlG | BSU25220 | BSU38650 | Hypothetical protein; Evidence 5: No homology to any previously reported sequences; PubMedId: 9864351. | Putative ABC-transporter (permease); Evidence 3: Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type pt: putative transporter. | 0.757 |
| antE | yxlH | BSU25220 | BSU38640 | Hypothetical protein; Evidence 5: No homology to any previously reported sequences; PubMedId: 9864351. | Putative efflux transporter; Evidence 3: Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type pt: putative transporter. | 0.696 |
| fabL | yfhS | BSU08650 | BSU08640 | Enoyl-acyl carrier protein reductase III; Catalyzes the reduction of a carbon-carbon double bond in an enoyl moiety that is covalently linked to an acyl carrier protein (ACP). It confers resistance to triclosan. Belongs to the short-chain dehydrogenases/reductases (SDR) family. | Conserved hypothetical protein; Evidence 4: Homologs of previously reported genes of unknown function; PubMedId: 10463184. | 0.938 |
| naiP | yceF | BSU02950 | BSU02920 | Niacin permease; Probably involved in the uptake of amidated and deamidated forms of niacin. Increases the growth rate of E.coli that is unable to make niacin de novo; confers increased sensitivity to the toxic niacin analog 6-amino-nicotinamide to wild-type E.coli. There is probably another mechanism for niacin uptake. | Putative stress adaptation transporter; Evidence 3: Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type pt: putative transporter. | 0.461 |
| naiP | yceG | BSU02950 | BSU02930 | Niacin permease; Probably involved in the uptake of amidated and deamidated forms of niacin. Increases the growth rate of E.coli that is unable to make niacin de novo; confers increased sensitivity to the toxic niacin analog 6-amino-nicotinamide to wild-type E.coli. There is probably another mechanism for niacin uptake. | Conserved hypothetical protein; Evidence 4: Homologs of previously reported genes of unknown function. | 0.909 |
| naiP | yceH | BSU02950 | BSU02940 | Niacin permease; Probably involved in the uptake of amidated and deamidated forms of niacin. Increases the growth rate of E.coli that is unable to make niacin de novo; confers increased sensitivity to the toxic niacin analog 6-amino-nicotinamide to wild-type E.coli. There is probably another mechanism for niacin uptake. | Conserved hypothetical protein; Evidence 4: Homologs of previously reported genes of unknown function; Belongs to the TelA family. | 0.872 |
| pbpE | pspA | BSU34440 | BSU06180 | Penicillin-binding protein 4*; Probably involved in peptidoglycan modification during cortex synthesis. | Phage shock protein A homolog; Evidence 1a: Function experimentally demonstrated in the studied strain; Product type h: extrachromosomal origin. | 0.459 |
| pbpE | racX | BSU34440 | BSU34430 | Penicillin-binding protein 4*; Probably involved in peptidoglycan modification during cortex synthesis. | Amino acid racemase; Amino-acid racemase able to utilize a broad range of substrates. Preferentially catalyzes the epimerization of LL- diaminopimelate, as well as the racemization of D-lysine, L-arginine, L-ornithine, L-lysine and D-arginine. Has lower activity against D- ornithine, L-histidine, L-alanine, L-tyrosine, L-phenylalanine, L- serine, L-glutamine, L-methionine, L-asparagine and L-homoserine. Has weak activity against L-norleucine, L-aminobutyric acid and L- norvaline. Has no activity toward nine L-amino acids (Thr, Glu, Asp, Val, Leu, Ile, Trp, Cit and Aad). D-amino acids m [...] | 0.996 |
| pbpE | rsiW | BSU34440 | BSU01740 | Penicillin-binding protein 4*; Probably involved in peptidoglycan modification during cortex synthesis. | anti-sigma(W) factor; The anti-sigma factor for extracytoplasmic function (ECF) sigma factor sigma-W (SigW). Holds SigW, its cognate ECF sigma factor, in an inactive form until released by regulated intramembrane proteolysis (RIP). SigW and RsiW mediate cell response to cell wall stress. RIP occurs when an extracytoplasmic signal triggers a concerted proteolytic cascade to transmit information and elicit cellular responses. The membrane-spanning regulatory substrate protein is first cut periplasmically (site-1 protease, S1P, PrsW) , then within the membrane itself (site-2 protease, S2P [...] | 0.540 |
| pbpE | sigW | BSU34440 | BSU01730 | Penicillin-binding protein 4*; Probably involved in peptidoglycan modification during cortex synthesis. | RNA polymerase ECF(extracytoplasmic function)-type sigma factor W; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. Sigma-W controls genes involved in response to cell envelope stress such as antimicrobial peptides , alkaline pH , transport processes and detoxification. | 0.843 |
| pbpE | sppA | BSU34440 | BSU29530 | Penicillin-binding protein 4*; Probably involved in peptidoglycan modification during cortex synthesis. | Signal peptide peptidase; Digestion of cleaved signal peptides (By similarity). Required for efficient processing of precursors under conditions of hyper-secretion. Has a preference for leucine-rich substrate peptides. Belongs to the peptidase S49 family. | 0.676 |
| pbpE | ybfO | BSU34440 | BSU02310 | Penicillin-binding protein 4*; Probably involved in peptidoglycan modification during cortex synthesis. | Putative exported hydrolase; Evidence 3: Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type pe: putative enzyme. | 0.810 |
| pbpE | yceC | BSU34440 | BSU02890 | Penicillin-binding protein 4*; Probably involved in peptidoglycan modification during cortex synthesis. | Putative stress adaptation protein; Evidence 3: Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type pf: putative factor; Belongs to the CAPAB/TerDEXZ family. | 0.726 |
| pbpE | yceE | BSU34440 | BSU02910 | Penicillin-binding protein 4*; Probably involved in peptidoglycan modification during cortex synthesis. | Putative stress adaptation protein; Evidence 3: Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type pf: putative factor; Belongs to the CAPAB/TerDEXZ family. | 0.442 |
| pbpE | ydjG | BSU34440 | BSU06190 | Penicillin-binding protein 4*; Probably involved in peptidoglycan modification during cortex synthesis. | Putative phage replication protein; Evidence 3: Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type h: extrachromosomal origin. | 0.428 |
| pbpE | ydjP | BSU34440 | BSU06280 | Penicillin-binding protein 4*; Probably involved in peptidoglycan modification during cortex synthesis. | Putative peroxydase; Evidence 3: Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. | 0.820 |
| pbpE | yjoB | BSU34440 | BSU12420 | Penicillin-binding protein 4*; Probably involved in peptidoglycan modification during cortex synthesis. | ATPase possibly involved in protein degradation; Shows ATPase activity. | 0.507 |
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