Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| pbpE | pspA | BSU34440 | BSU06180 | Penicillin-binding protein 4*; Probably involved in peptidoglycan modification during cortex synthesis. | Phage shock protein A homolog; Evidence 1a: Function experimentally demonstrated in the studied strain; Product type h: extrachromosomal origin. | 0.459 |
| pbpE | racX | BSU34440 | BSU34430 | Penicillin-binding protein 4*; Probably involved in peptidoglycan modification during cortex synthesis. | Amino acid racemase; Amino-acid racemase able to utilize a broad range of substrates. Preferentially catalyzes the epimerization of LL- diaminopimelate, as well as the racemization of D-lysine, L-arginine, L-ornithine, L-lysine and D-arginine. Has lower activity against D- ornithine, L-histidine, L-alanine, L-tyrosine, L-phenylalanine, L- serine, L-glutamine, L-methionine, L-asparagine and L-homoserine. Has weak activity against L-norleucine, L-aminobutyric acid and L- norvaline. Has no activity toward nine L-amino acids (Thr, Glu, Asp, Val, Leu, Ile, Trp, Cit and Aad). D-amino acids m [...] | 0.996 |
| pbpE | ybfO | BSU34440 | BSU02310 | Penicillin-binding protein 4*; Probably involved in peptidoglycan modification during cortex synthesis. | Putative exported hydrolase; Evidence 3: Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type pe: putative enzyme. | 0.810 |
| pbpE | ydjG | BSU34440 | BSU06190 | Penicillin-binding protein 4*; Probably involved in peptidoglycan modification during cortex synthesis. | Putative phage replication protein; Evidence 3: Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type h: extrachromosomal origin. | 0.428 |
| pbpE | ydjP | BSU34440 | BSU06280 | Penicillin-binding protein 4*; Probably involved in peptidoglycan modification during cortex synthesis. | Putative peroxydase; Evidence 3: Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. | 0.820 |
| pbpE | yqeZ | BSU34440 | BSU25390 | Penicillin-binding protein 4*; Probably involved in peptidoglycan modification during cortex synthesis. | Putative membrane bound hydrolase; Evidence 3: Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type pe: putative enzyme. | 0.774 |
| pbpE | yqfA | BSU34440 | BSU25380 | Penicillin-binding protein 4*; Probably involved in peptidoglycan modification during cortex synthesis. | Conserved hypothetical protein; Evidence 4: Homologs of previously reported genes of unknown function; Product type cp: cell process. | 0.503 |
| pbpE | yqfB | BSU34440 | BSU25370 | Penicillin-binding protein 4*; Probably involved in peptidoglycan modification during cortex synthesis. | Conserved hypothetical protein; Evidence 4: Homologs of previously reported genes of unknown function. | 0.524 |
| pbpE | ythP | BSU34440 | BSU30010 | Penicillin-binding protein 4*; Probably involved in peptidoglycan modification during cortex synthesis. | Putative ABC transporter (ATP-binding protein); Evidence 3: Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type pt: putative transporter; Belongs to the ABC transporter superfamily. | 0.672 |
| pbpE | ythQ | BSU34440 | BSU30000 | Penicillin-binding protein 4*; Probably involved in peptidoglycan modification during cortex synthesis. | Putative ABC transporter (permease); Evidence 3: Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type pt: putative transporter. | 0.539 |
| pbpE | yuaF | BSU34440 | BSU31020 | Penicillin-binding protein 4*; Probably involved in peptidoglycan modification during cortex synthesis. | Putative membrane integrity integral membrane protein; Evidence 3: Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type pm: putative membrane component. | 0.740 |
| pbpE | yuaG | BSU34440 | BSU31010 | Penicillin-binding protein 4*; Probably involved in peptidoglycan modification during cortex synthesis. | Putative flotillin-like protein; Evidence 3: Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type pf: putative factor. | 0.598 |
| pbpE | yvlA | BSU34440 | BSU35130 | Penicillin-binding protein 4*; Probably involved in peptidoglycan modification during cortex synthesis. | Conserved hypothetical protein; Evidence 4: Homologs of previously reported genes of unknown function. | 0.693 |
| pbpE | yvlB | BSU34440 | BSU35120 | Penicillin-binding protein 4*; Probably involved in peptidoglycan modification during cortex synthesis. | Conserved hypothetical protein; Evidence 4: Homologs of previously reported genes of unknown function. | 0.540 |
| pspA | pbpE | BSU06180 | BSU34440 | Phage shock protein A homolog; Evidence 1a: Function experimentally demonstrated in the studied strain; Product type h: extrachromosomal origin. | Penicillin-binding protein 4*; Probably involved in peptidoglycan modification during cortex synthesis. | 0.459 |
| pspA | racX | BSU06180 | BSU34430 | Phage shock protein A homolog; Evidence 1a: Function experimentally demonstrated in the studied strain; Product type h: extrachromosomal origin. | Amino acid racemase; Amino-acid racemase able to utilize a broad range of substrates. Preferentially catalyzes the epimerization of LL- diaminopimelate, as well as the racemization of D-lysine, L-arginine, L-ornithine, L-lysine and D-arginine. Has lower activity against D- ornithine, L-histidine, L-alanine, L-tyrosine, L-phenylalanine, L- serine, L-glutamine, L-methionine, L-asparagine and L-homoserine. Has weak activity against L-norleucine, L-aminobutyric acid and L- norvaline. Has no activity toward nine L-amino acids (Thr, Glu, Asp, Val, Leu, Ile, Trp, Cit and Aad). D-amino acids m [...] | 0.560 |
| pspA | spo0M | BSU06180 | BSU08760 | Phage shock protein A homolog; Evidence 1a: Function experimentally demonstrated in the studied strain; Product type h: extrachromosomal origin. | Sporulation-control gene; Controls the expression of spo0A and is required to pass the morphological stage 0 of sporulation; Belongs to the spo0M family. | 0.499 |
| pspA | ydbS | BSU06180 | BSU04590 | Phage shock protein A homolog; Evidence 1a: Function experimentally demonstrated in the studied strain; Product type h: extrachromosomal origin. | Conserved hypothetical protein; Evidence 4: Homologs of previously reported genes of unknown function. | 0.627 |
| pspA | ydbT | BSU06180 | BSU04600 | Phage shock protein A homolog; Evidence 1a: Function experimentally demonstrated in the studied strain; Product type h: extrachromosomal origin. | Conserved hypothetical protein; Evidence 4: Homologs of previously reported genes of unknown function. | 0.514 |
| pspA | ydjG | BSU06180 | BSU06190 | Phage shock protein A homolog; Evidence 1a: Function experimentally demonstrated in the studied strain; Product type h: extrachromosomal origin. | Putative phage replication protein; Evidence 3: Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type h: extrachromosomal origin. | 0.992 |
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