STRINGSTRING
yopT yopT yopS yopS yopR yopR yopQ yopQ yopP yopP yopO yopO yopN yopN yopM yopM yopK yopK yopJ yopJ yopH yopH yopE yopE yopD yopD yopB yopB
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
yopTHypothetical protein; Evidence 5: No homology to any previously reported sequences. (72 aa)
yopSPutative transcriptional regulator; Evidence 3: Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type pr: putative regulator. (74 aa)
yopRPutative integrase; Evidence 3: Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type pe: putative enzyme. (325 aa)
yopQConserved hypothetical protein; Evidence 4: Homologs of previously reported genes of unknown function. (460 aa)
yopPPutative phage integrase; Probable recombinase that does not seem to have a role in chromosome dimer resolution per se but rather may have some facilitative role during chromosome partitioning in general. Belongs to the 'phage' integrase family. (358 aa)
yopOPutative transcriptional regulator; Evidence 3: Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type pr: putative regulator. (70 aa)
yopNHypothetical protein; Evidence 5: No homology to any previously reported sequences. (105 aa)
yopMHypothetical protein; Evidence 5: No homology to any previously reported sequences. (66 aa)
yopKConserved hypothetical protein; Evidence 4: Homologs of previously reported genes of unknown function. (386 aa)
yopJPutative nucleotide binding protein; Evidence 3: Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type pf: putative factor. (138 aa)
yopHConserved hypothetical protein; Evidence 4: Homologs of previously reported genes of unknown function. (178 aa)
yopEHypothetical protein; Evidence 5: No homology to any previously reported sequences. (83 aa)
yopDPutative conserved hypothetical membrane protein; Evidence 3: Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type pm: putative membrane component. (131 aa)
yopBPutative transcriptional regulator; May be the antitoxin component of a type II toxin-antitoxin (TA) system. Neutralizes the activity of cognate toxin YopC. (75 aa)
Your Current Organism:
Bacillus subtilis 168
NCBI taxonomy Id: 224308
Other names: B. subtilis subsp. subtilis str. 168, Bacillus subtilis subsp. subtilis 168, Bacillus subtilis subsp. subtilis str. 168, Bacillus subtilis subsp. subtilis str. BGSC 1A700
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.