Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| acdA | etfA | BSU37170 | BSU28520 | acyl-CoA dehydrogenase; Involved in the degradation of long-chain fatty acids. | Electron transfer flavoprotein (alpha subunit); The electron transfer flavoprotein serves as a specific electron acceptor for other dehydrogenases. It transfers the electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase (ETF dehydrogenase) (By similarity). | 0.998 |
| acdA | etfB | BSU37170 | BSU28530 | acyl-CoA dehydrogenase; Involved in the degradation of long-chain fatty acids. | Electron transfer flavoprotein (beta subunit); The electron transfer flavoprotein serves as a specific electron acceptor for other dehydrogenases. It transfers the electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase (ETF dehydrogenase) (By similarity). | 0.994 |
| acdA | fadA | BSU37170 | BSU32830 | acyl-CoA dehydrogenase; Involved in the degradation of long-chain fatty acids. | acetyl-CoA C-acyltransferase; Involved in the degradation of long-chain fatty acids; Belongs to the thiolase-like superfamily. Thiolase family. | 0.975 |
| acdA | fadB | BSU37170 | BSU28540 | acyl-CoA dehydrogenase; Involved in the degradation of long-chain fatty acids. | enoyl-CoA hydratase; Involved in the degradation of long-chain fatty acids. | 0.979 |
| acdA | fadE | BSU37170 | BSU32820 | acyl-CoA dehydrogenase; Involved in the degradation of long-chain fatty acids. | acyl-CoA dehydrogenase (FAD dependent); Involved in the degradation of long-chain fatty acids. | 0.699 |
| acdA | fadF | BSU37170 | BSU37180 | acyl-CoA dehydrogenase; Involved in the degradation of long-chain fatty acids. | Putative iron-sulphur-binding reductase; Evidence 3: Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. | 0.973 |
| acdA | fadH | BSU37170 | BSU14060 | acyl-CoA dehydrogenase; Involved in the degradation of long-chain fatty acids. | Putative 2,4-dienoyl-CoA reductase; Auxiliary enzyme of beta-oxidation. It participates in the metabolism of unsaturated fatty enoyl-CoA esters having double bonds in both even- and odd-numbered positions. Catalyzes the NADP-dependent reduction of 2,4-dienoyl-CoA to yield trans-3-enoyl-CoA (By similarity); Belongs to the short-chain dehydrogenases/reductases (SDR) family. 2,4-dienoyl-CoA reductase subfamily. | 0.893 |
| acdA | fadN | BSU37170 | BSU32840 | acyl-CoA dehydrogenase; Involved in the degradation of long-chain fatty acids. | enoyl-CoA hydratase / 3-hydroxyacyl-CoA dehydrogenase; Involved in the degradation of long-chain fatty acids; Belongs to the 3-hydroxyacyl-CoA dehydrogenase family. | 0.998 |
| acdA | fadR | BSU37170 | BSU28550 | acyl-CoA dehydrogenase; Involved in the degradation of long-chain fatty acids. | Transcriptional regulator of fatty acids degradation (TetR/AcrR family); Transcriptional regulator in fatty acid degradation. Represses transcription of genes required for fatty acid transport and beta-oxidation, including acdA, fadA, fadB, fadE, fadF, fadG, fadH, fadM, fadN, lcfA and lcfB. Binding of FadR to DNA is specifically inhibited by long chain fatty acyl-CoA compounds of 14-20 carbon atoms in length. | 0.862 |
| acdA | lcfA | BSU37170 | BSU28560 | acyl-CoA dehydrogenase; Involved in the degradation of long-chain fatty acids. | Long chain acyl-CoA ligase (degradative); Evidence 1a: Function experimentally demonstrated in the studied strain; Product type e: enzyme. | 0.890 |
| acdA | lcfB | BSU37170 | BSU10270 | acyl-CoA dehydrogenase; Involved in the degradation of long-chain fatty acids. | Long-chain fatty-acid-CoA ligase (degradative); Involved in the degradation of long-chain fatty acids; Belongs to the ATP-dependent AMP-binding enzyme family. | 0.952 |
| acdA | rpoE | BSU37170 | BSU37160 | acyl-CoA dehydrogenase; Involved in the degradation of long-chain fatty acids. | RNA polymerase (delta subunit); Participates in both the initiation and recycling phases of transcription. In the presence of the delta subunit, RNAP displays an increased specificity of transcription, a decreased affinity for nucleic acids, and an increased efficiency of RNA synthesis because of enhanced recycling. May function in sigma factor switching. It displaces RNA bound to RNA polymerase in a binary complex; Belongs to the RpoE family. | 0.725 |
| acdA | ykuG | BSU37170 | BSU14071 | acyl-CoA dehydrogenase; Involved in the degradation of long-chain fatty acids. | Putative cell wall protein; Evidence 3: Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative membrane component. | 0.758 |
| ccpA | scoC | BSU29740 | BSU09990 | Transcriptional regulator (Lacl family); Global transcriptional regulator of carbon catabolite repression (CCR) and carbon catabolite activation (CCA), which ensures optimal energy usage under diverse conditions. Interacts with either P- Ser-HPr or P-Ser-Crh, leading to the formation of a complex that binds to DNA at the catabolite-response elements (cre). Binding to DNA allows activation or repression of many different genes and operons. | HTH-type transcriptional regulator Hpr; Negative regulator of protease production and sporulation. Acts by binding directly to the promoter of protease genes (aprE and nprE), and by repressing oligopeptide permease operons (appABCDF and oppABCDF), thereby preventing uptake of oligopeptides required for initiation of sporulation. Acts with SinR as a corepressor of epr expression. | 0.986 |
| etfA | acdA | BSU28520 | BSU37170 | Electron transfer flavoprotein (alpha subunit); The electron transfer flavoprotein serves as a specific electron acceptor for other dehydrogenases. It transfers the electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase (ETF dehydrogenase) (By similarity). | acyl-CoA dehydrogenase; Involved in the degradation of long-chain fatty acids. | 0.998 |
| etfA | etfB | BSU28520 | BSU28530 | Electron transfer flavoprotein (alpha subunit); The electron transfer flavoprotein serves as a specific electron acceptor for other dehydrogenases. It transfers the electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase (ETF dehydrogenase) (By similarity). | Electron transfer flavoprotein (beta subunit); The electron transfer flavoprotein serves as a specific electron acceptor for other dehydrogenases. It transfers the electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase (ETF dehydrogenase) (By similarity). | 0.999 |
| etfA | fadA | BSU28520 | BSU32830 | Electron transfer flavoprotein (alpha subunit); The electron transfer flavoprotein serves as a specific electron acceptor for other dehydrogenases. It transfers the electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase (ETF dehydrogenase) (By similarity). | acetyl-CoA C-acyltransferase; Involved in the degradation of long-chain fatty acids; Belongs to the thiolase-like superfamily. Thiolase family. | 0.924 |
| etfA | fadB | BSU28520 | BSU28540 | Electron transfer flavoprotein (alpha subunit); The electron transfer flavoprotein serves as a specific electron acceptor for other dehydrogenases. It transfers the electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase (ETF dehydrogenase) (By similarity). | enoyl-CoA hydratase; Involved in the degradation of long-chain fatty acids. | 0.987 |
| etfA | fadE | BSU28520 | BSU32820 | Electron transfer flavoprotein (alpha subunit); The electron transfer flavoprotein serves as a specific electron acceptor for other dehydrogenases. It transfers the electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase (ETF dehydrogenase) (By similarity). | acyl-CoA dehydrogenase (FAD dependent); Involved in the degradation of long-chain fatty acids. | 0.995 |
| etfA | fadF | BSU28520 | BSU37180 | Electron transfer flavoprotein (alpha subunit); The electron transfer flavoprotein serves as a specific electron acceptor for other dehydrogenases. It transfers the electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase (ETF dehydrogenase) (By similarity). | Putative iron-sulphur-binding reductase; Evidence 3: Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. | 0.903 |
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