Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| ffh | flhF | BSU15980 | BSU16400 | Signal recognition particle-like (SRP) GTPase; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY. Interaction with FtsY leads to the transfer of the RNC complex to the Sec translocase for insertion into the membrane, the hydrolysis of GTP by both Ffh and FtsY, and the dissociation of the SRP-FtsY complex into the individua [...] | GTPase involved in the export of flagella; Necessary for flagellar biosynthesis. May be involved in translocation of the flagellum. | 0.635 |
| ffh | fliF | BSU15980 | BSU16210 | Signal recognition particle-like (SRP) GTPase; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY. Interaction with FtsY leads to the transfer of the RNC complex to the Sec translocase for insertion into the membrane, the hydrolysis of GTP by both Ffh and FtsY, and the dissociation of the SRP-FtsY complex into the individua [...] | Flagellar basal-body M-ring protein; The M ring may be actively involved in energy transduction. | 0.450 |
| flhA | flhB | BSU16390 | BSU16380 | Component of the flagellar export machinery; Involved in the export of flagellum proteins. | Component of the flagellar export machinery; May be involved in the export of flagellum proteins; Belongs to the type III secretion exporter family. | 0.999 |
| flhA | flhF | BSU16390 | BSU16400 | Component of the flagellar export machinery; Involved in the export of flagellum proteins. | GTPase involved in the export of flagella; Necessary for flagellar biosynthesis. May be involved in translocation of the flagellum. | 0.999 |
| flhA | fliF | BSU16390 | BSU16210 | Component of the flagellar export machinery; Involved in the export of flagellum proteins. | Flagellar basal-body M-ring protein; The M ring may be actively involved in energy transduction. | 0.999 |
| flhA | fliP | BSU16390 | BSU16350 | Component of the flagellar export machinery; Involved in the export of flagellum proteins. | Component of the flagellar export machinery; Plays a role in the flagellum-specific transport system. Belongs to the FliP/MopC/SpaP family. | 0.999 |
| flhA | fliR | BSU16390 | BSU16370 | Component of the flagellar export machinery; Involved in the export of flagellum proteins. | Component of the flagellar export machinery; Role in flagellar biosynthesis; Belongs to the FliR/MopE/SpaR family. | 0.999 |
| flhA | hag | BSU16390 | BSU35360 | Component of the flagellar export machinery; Involved in the export of flagellum proteins. | Flagellin protein; Flagellin is the subunit which polymerizes to form the filaments of bacterial flagella. Assembly into flagella requires FliW. Acts as a homeostatic autoinhibitory regulator to control its own cytoplasmic levels. Partner switching by flagellin between FliW and CsrA provides a flagellar assembly checkpoint to tightly control the timing of flagellin synthesis. Flagellin binds to assembly factor FliW, freeing translation regulator CsrA to repress translation of the flagellin mRNA. When the flagellar hook is assembled flagellin is secreted, depleting intracellular flagell [...] | 0.994 |
| flhA | sigD | BSU16390 | BSU16470 | Component of the flagellar export machinery; Involved in the export of flagellum proteins. | RNA polymerase sigma-28 factor (sigma-D); Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This alternative sigma factor is required for the transcription of the flagellin and motility genes as well as for wild- type chemotaxis. | 0.985 |
| flhB | flhA | BSU16380 | BSU16390 | Component of the flagellar export machinery; May be involved in the export of flagellum proteins; Belongs to the type III secretion exporter family. | Component of the flagellar export machinery; Involved in the export of flagellum proteins. | 0.999 |
| flhB | flhF | BSU16380 | BSU16400 | Component of the flagellar export machinery; May be involved in the export of flagellum proteins; Belongs to the type III secretion exporter family. | GTPase involved in the export of flagella; Necessary for flagellar biosynthesis. May be involved in translocation of the flagellum. | 0.998 |
| flhB | fliF | BSU16380 | BSU16210 | Component of the flagellar export machinery; May be involved in the export of flagellum proteins; Belongs to the type III secretion exporter family. | Flagellar basal-body M-ring protein; The M ring may be actively involved in energy transduction. | 0.998 |
| flhB | fliP | BSU16380 | BSU16350 | Component of the flagellar export machinery; May be involved in the export of flagellum proteins; Belongs to the type III secretion exporter family. | Component of the flagellar export machinery; Plays a role in the flagellum-specific transport system. Belongs to the FliP/MopC/SpaP family. | 0.999 |
| flhB | fliR | BSU16380 | BSU16370 | Component of the flagellar export machinery; May be involved in the export of flagellum proteins; Belongs to the type III secretion exporter family. | Component of the flagellar export machinery; Role in flagellar biosynthesis; Belongs to the FliR/MopE/SpaR family. | 0.999 |
| flhB | hag | BSU16380 | BSU35360 | Component of the flagellar export machinery; May be involved in the export of flagellum proteins; Belongs to the type III secretion exporter family. | Flagellin protein; Flagellin is the subunit which polymerizes to form the filaments of bacterial flagella. Assembly into flagella requires FliW. Acts as a homeostatic autoinhibitory regulator to control its own cytoplasmic levels. Partner switching by flagellin between FliW and CsrA provides a flagellar assembly checkpoint to tightly control the timing of flagellin synthesis. Flagellin binds to assembly factor FliW, freeing translation regulator CsrA to repress translation of the flagellin mRNA. When the flagellar hook is assembled flagellin is secreted, depleting intracellular flagell [...] | 0.981 |
| flhB | sigD | BSU16380 | BSU16470 | Component of the flagellar export machinery; May be involved in the export of flagellum proteins; Belongs to the type III secretion exporter family. | RNA polymerase sigma-28 factor (sigma-D); Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This alternative sigma factor is required for the transcription of the flagellin and motility genes as well as for wild- type chemotaxis. | 0.969 |
| flhF | ffh | BSU16400 | BSU15980 | GTPase involved in the export of flagella; Necessary for flagellar biosynthesis. May be involved in translocation of the flagellum. | Signal recognition particle-like (SRP) GTPase; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY. Interaction with FtsY leads to the transfer of the RNC complex to the Sec translocase for insertion into the membrane, the hydrolysis of GTP by both Ffh and FtsY, and the dissociation of the SRP-FtsY complex into the individua [...] | 0.635 |
| flhF | flhA | BSU16400 | BSU16390 | GTPase involved in the export of flagella; Necessary for flagellar biosynthesis. May be involved in translocation of the flagellum. | Component of the flagellar export machinery; Involved in the export of flagellum proteins. | 0.999 |
| flhF | flhB | BSU16400 | BSU16380 | GTPase involved in the export of flagella; Necessary for flagellar biosynthesis. May be involved in translocation of the flagellum. | Component of the flagellar export machinery; May be involved in the export of flagellum proteins; Belongs to the type III secretion exporter family. | 0.998 |
| flhF | fliF | BSU16400 | BSU16210 | GTPase involved in the export of flagella; Necessary for flagellar biosynthesis. May be involved in translocation of the flagellum. | Flagellar basal-body M-ring protein; The M ring may be actively involved in energy transduction. | 0.996 |
page 1 of 3