STRINGSTRING
ycbR ycbR sscB sscB xkdP xkdP xkdX xkdX xhlA xhlA sigI sigI yoaN yoaN bhlA bhlA ripX ripX dnaG dnaG yqxA yqxA ytxJ ytxJ sigO sigO oxdC oxdC
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
ycbRConserved hypothetical protein; Evidence 4: Homologs of previously reported genes of unknown function. (243 aa)
sscBSpore and germination protein; Evidence 1a: Function experimentally demonstrated in the studied strain; Product type f: factor. (28 aa)
xkdPPutative PBSX prophage murein binding protein; Evidence 3: Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type pf: putative factor. (219 aa)
xkdXConserved hypothetical protein; Evidence 4: Homologs of previously reported genes of unknown function; To B.subtilis YqcE. (54 aa)
xhlADefective prophage PBSX putative enzyme; Associated with cell lysis upon induction of PbsX; To B.licheniformis xpaF1 and xpaL1. (89 aa)
sigIRNA polymerase sigma factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is involved in regulation of cell wall metabolism in response to heat stress. Acts by regulating the expression of genes such as bcrC, mreBH and lytE. Also plays a role in survival at low temperatures. Belongs to the sigma-70 factor family. SigI subfamily. (251 aa)
yoaNOxalate decarboxylase; Converts oxalate to formate and CO(2); To B.subtilis OxdC. (392 aa)
bhlABacteriophage SPbeta holin-like protein; May be involved in the secretion of the autolysin BlyA. (70 aa)
ripXSite-specific tyrosine recombinase for chromosome partitioning; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids. (296 aa)
dnaGDNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. (603 aa)
yqxAConserved hypothetical protein; Evidence 4: Homologs of previously reported genes of unknown function. (112 aa)
ytxJConserved hypothetical protein; Evidence 4: Homologs of previously reported genes of unknown function; PubMedId: 8733232. (108 aa)
sigOAlternative sigma factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. Together with its coactivator RsoA, positively regulates the expression of at least three operons, including oxdC-yvrL, sigO-rsoA and yvrJ. Required for the acid stress-dependent induction of the oxalate decarboxylase oxdC. (176 aa)
oxdCOxalate decarboxylase; Converts oxalate to formate and CO(2) in an O(2)-dependent reaction. Can also catalyze minor side reactions: oxalate oxidation to produce H(2)O(2), and oxalate-dependent, H(2)O(2)-independent dye oxidations. (385 aa)
Your Current Organism:
Bacillus subtilis 168
NCBI taxonomy Id: 224308
Other names: B. subtilis subsp. subtilis str. 168, Bacillus subtilis subsp. subtilis 168, Bacillus subtilis subsp. subtilis str. 168, Bacillus subtilis subsp. subtilis str. BGSC 1A700
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