(14 nodes) Structural molecule activity network (Methanobrevibacter sp. AbM4)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	rps19e	Ribosomal protein S19e Rps19e; May be involved in maturation of the 30S ribosomal subunit. Belongs to the eukaryotic ribosomal protein eS19 family. (146 aa)
	rpl31e	Ribosomal protein L31e Rpl31e; Belongs to the ribosomal protein L31e family. (88 aa)
	rps3ae	Ribosomal protein S3Ae Rps3ae; Belongs to the eukaryotic ribosomal protein eS1 family. (191 aa)
	rpl1	Ribosomal protein L1P Rpl1p; Binds directly to 23S rRNA. Probably involved in E site tRNA release. (212 aa)
	rpl12	Ribosomal protein L12P Rpl12p; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the eukaryotic ribosomal protein P1/P2 family. (100 aa)
	rpl30e	Ribosomal protein L30e Rpl30e; Belongs to the eukaryotic ribosomal protein eL30 family. (99 aa)
	rps17e	Ribosomal protein S17e Rps17e; Belongs to the eukaryotic ribosomal protein eS17 family. (64 aa)
	rpl24e	Ribosomal protein L24e Rpl24e; Binds to the 23S rRNA. (53 aa)
	Abm4_0926	Ribosomal protein L15e Rpl15e. (184 aa)
	Abm4_1248	Ribosomal protein L14e Rpl14e. (73 aa)
	rpl6p	Ribosomal protein L6P Rpl6p; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family. (178 aa)
	rpl5p	Ribosomal protein L5P Rpl5p; This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. May contact the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs. (171 aa)
	rpl14	Ribosomal protein L14P Rpl14p; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family. (132 aa)
	rpl21e	Ribosomal protein L21e Rpl21e; Belongs to the eukaryotic ribosomal protein eL21 family. (96 aa)

Your Current Organism:

Methanobrevibacter sp. AbM4

NCBI taxonomy Id: 224719
Other names: M. sp. AbM4

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Abm4_0926	Abm4_1248	Abm4_0926	Abm4_1248	Ribosomal protein L15e Rpl15e.	Ribosomal protein L14e Rpl14e.	0.998
Abm4_0926	rpl1	Abm4_0926	Abm4_0257	Ribosomal protein L15e Rpl15e.	Ribosomal protein L1P Rpl1p; Binds directly to 23S rRNA. Probably involved in E site tRNA release.	0.999
Abm4_0926	rpl12	Abm4_0926	Abm4_0259	Ribosomal protein L15e Rpl15e.	Ribosomal protein L12P Rpl12p; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the eukaryotic ribosomal protein P1/P2 family.	0.999
Abm4_0926	rpl14	Abm4_0926	Abm4_1266	Ribosomal protein L15e Rpl15e.	Ribosomal protein L14P Rpl14p; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family.	0.999
Abm4_0926	rpl21e	Abm4_0926	Abm4_1658	Ribosomal protein L15e Rpl15e.	Ribosomal protein L21e Rpl21e; Belongs to the eukaryotic ribosomal protein eL21 family.	0.999
Abm4_0926	rpl24e	Abm4_0926	Abm4_0711	Ribosomal protein L15e Rpl15e.	Ribosomal protein L24e Rpl24e; Binds to the 23S rRNA.	0.999
Abm4_0926	rpl30e	Abm4_0926	Abm4_0350	Ribosomal protein L15e Rpl15e.	Ribosomal protein L30e Rpl30e; Belongs to the eukaryotic ribosomal protein eL30 family.	0.999
Abm4_0926	rpl31e	Abm4_0926	Abm4_0200	Ribosomal protein L15e Rpl15e.	Ribosomal protein L31e Rpl31e; Belongs to the ribosomal protein L31e family.	0.999
Abm4_0926	rpl5p	Abm4_0926	Abm4_1263	Ribosomal protein L15e Rpl15e.	Ribosomal protein L5P Rpl5p; This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. May contact the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs.	0.999
Abm4_0926	rpl6p	Abm4_0926	Abm4_1260	Ribosomal protein L15e Rpl15e.	Ribosomal protein L6P Rpl6p; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family.	0.999
Abm4_0926	rps17e	Abm4_0926	Abm4_0545	Ribosomal protein L15e Rpl15e.	Ribosomal protein S17e Rps17e; Belongs to the eukaryotic ribosomal protein eS17 family.	0.999
Abm4_0926	rps19e	Abm4_0926	Abm4_0196	Ribosomal protein L15e Rpl15e.	Ribosomal protein S19e Rps19e; May be involved in maturation of the 30S ribosomal subunit. Belongs to the eukaryotic ribosomal protein eS19 family.	0.999
Abm4_0926	rps3ae	Abm4_0926	Abm4_0221	Ribosomal protein L15e Rpl15e.	Ribosomal protein S3Ae Rps3ae; Belongs to the eukaryotic ribosomal protein eS1 family.	0.999
Abm4_1248	Abm4_0926	Abm4_1248	Abm4_0926	Ribosomal protein L14e Rpl14e.	Ribosomal protein L15e Rpl15e.	0.998
Abm4_1248	rpl1	Abm4_1248	Abm4_0257	Ribosomal protein L14e Rpl14e.	Ribosomal protein L1P Rpl1p; Binds directly to 23S rRNA. Probably involved in E site tRNA release.	0.999
Abm4_1248	rpl12	Abm4_1248	Abm4_0259	Ribosomal protein L14e Rpl14e.	Ribosomal protein L12P Rpl12p; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the eukaryotic ribosomal protein P1/P2 family.	0.998
Abm4_1248	rpl14	Abm4_1248	Abm4_1266	Ribosomal protein L14e Rpl14e.	Ribosomal protein L14P Rpl14p; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family.	0.999
Abm4_1248	rpl21e	Abm4_1248	Abm4_1658	Ribosomal protein L14e Rpl14e.	Ribosomal protein L21e Rpl21e; Belongs to the eukaryotic ribosomal protein eL21 family.	0.999
Abm4_1248	rpl24e	Abm4_1248	Abm4_0711	Ribosomal protein L14e Rpl14e.	Ribosomal protein L24e Rpl24e; Binds to the 23S rRNA.	0.999
Abm4_1248	rpl30e	Abm4_1248	Abm4_0350	Ribosomal protein L14e Rpl14e.	Ribosomal protein L30e Rpl30e; Belongs to the eukaryotic ribosomal protein eL30 family.	0.999