6 items (Methanobrevibacter sp. AbM4) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	fdhA	Formate dehydrogenase alpha subunit FdhA. (688 aa)
	fdhB	Formate dehydrogenase beta subunit FdhB. (411 aa)
	mvhD2	Methyl viologen-reducing hydrogenase delta subunit MvhD2. (129 aa)
	fdhB2	Formate dehydrogenase beta subunit FdhB2. (385 aa)
	fdhA2	Formate dehydrogenase alpha subunit FdhA2. (343 aa)
	hdrA2	CoB--CoM heterodisulfide reductase subunit A HdrA2; Part of a complex that catalyzes the reversible reduction of CoM-S-S-CoB to the thiol-coenzymes H-S-CoM (coenzyme M) and H-S-CoB (coenzyme B). (660 aa)

Your Current Organism:

Methanobrevibacter sp. AbM4

NCBI taxonomy Id: 224719
Other names: M. sp. AbM4

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
fdhA	fdhA2	Abm4_0131	Abm4_0855	Formate dehydrogenase alpha subunit FdhA.	Formate dehydrogenase alpha subunit FdhA2.	0.909
fdhA	fdhB	Abm4_0131	Abm4_0132	Formate dehydrogenase alpha subunit FdhA.	Formate dehydrogenase beta subunit FdhB.	0.998
fdhA	fdhB2	Abm4_0131	Abm4_0854	Formate dehydrogenase alpha subunit FdhA.	Formate dehydrogenase beta subunit FdhB2.	0.978
fdhA	hdrA2	Abm4_0131	Abm4_1691	Formate dehydrogenase alpha subunit FdhA.	CoB--CoM heterodisulfide reductase subunit A HdrA2; Part of a complex that catalyzes the reversible reduction of CoM-S-S-CoB to the thiol-coenzymes H-S-CoM (coenzyme M) and H-S-CoB (coenzyme B).	0.974
fdhA	mvhD2	Abm4_0131	Abm4_0853	Formate dehydrogenase alpha subunit FdhA.	Methyl viologen-reducing hydrogenase delta subunit MvhD2.	0.975
fdhA2	fdhA	Abm4_0855	Abm4_0131	Formate dehydrogenase alpha subunit FdhA2.	Formate dehydrogenase alpha subunit FdhA.	0.909
fdhA2	fdhB	Abm4_0855	Abm4_0132	Formate dehydrogenase alpha subunit FdhA2.	Formate dehydrogenase beta subunit FdhB.	0.989
fdhA2	fdhB2	Abm4_0855	Abm4_0854	Formate dehydrogenase alpha subunit FdhA2.	Formate dehydrogenase beta subunit FdhB2.	0.999
fdhA2	hdrA2	Abm4_0855	Abm4_1691	Formate dehydrogenase alpha subunit FdhA2.	CoB--CoM heterodisulfide reductase subunit A HdrA2; Part of a complex that catalyzes the reversible reduction of CoM-S-S-CoB to the thiol-coenzymes H-S-CoM (coenzyme M) and H-S-CoB (coenzyme B).	0.977
fdhA2	mvhD2	Abm4_0855	Abm4_0853	Formate dehydrogenase alpha subunit FdhA2.	Methyl viologen-reducing hydrogenase delta subunit MvhD2.	0.992
fdhB	fdhA	Abm4_0132	Abm4_0131	Formate dehydrogenase beta subunit FdhB.	Formate dehydrogenase alpha subunit FdhA.	0.998
fdhB	fdhA2	Abm4_0132	Abm4_0855	Formate dehydrogenase beta subunit FdhB.	Formate dehydrogenase alpha subunit FdhA2.	0.989
fdhB	fdhB2	Abm4_0132	Abm4_0854	Formate dehydrogenase beta subunit FdhB.	Formate dehydrogenase beta subunit FdhB2.	0.905
fdhB	hdrA2	Abm4_0132	Abm4_1691	Formate dehydrogenase beta subunit FdhB.	CoB--CoM heterodisulfide reductase subunit A HdrA2; Part of a complex that catalyzes the reversible reduction of CoM-S-S-CoB to the thiol-coenzymes H-S-CoM (coenzyme M) and H-S-CoB (coenzyme B).	0.992
fdhB	mvhD2	Abm4_0132	Abm4_0853	Formate dehydrogenase beta subunit FdhB.	Methyl viologen-reducing hydrogenase delta subunit MvhD2.	0.994
fdhB2	fdhA	Abm4_0854	Abm4_0131	Formate dehydrogenase beta subunit FdhB2.	Formate dehydrogenase alpha subunit FdhA.	0.978
fdhB2	fdhA2	Abm4_0854	Abm4_0855	Formate dehydrogenase beta subunit FdhB2.	Formate dehydrogenase alpha subunit FdhA2.	0.999
fdhB2	fdhB	Abm4_0854	Abm4_0132	Formate dehydrogenase beta subunit FdhB2.	Formate dehydrogenase beta subunit FdhB.	0.905
fdhB2	hdrA2	Abm4_0854	Abm4_1691	Formate dehydrogenase beta subunit FdhB2.	CoB--CoM heterodisulfide reductase subunit A HdrA2; Part of a complex that catalyzes the reversible reduction of CoM-S-S-CoB to the thiol-coenzymes H-S-CoM (coenzyme M) and H-S-CoB (coenzyme B).	0.995
fdhB2	mvhD2	Abm4_0854	Abm4_0853	Formate dehydrogenase beta subunit FdhB2.	Methyl viologen-reducing hydrogenase delta subunit MvhD2.	0.996