STRINGSTRING
Abm4_1355 Abm4_1355 rnz rnz mutS2 mutS2 Abm4_1426 Abm4_1426 rps9p rps9p Abm4_1456 Abm4_1456 thi4 thi4 Abm4_1472 Abm4_1472 top6B top6B rps2p rps2p Abm4_1231 Abm4_1231 nth nth xth xth Abm4_1149 Abm4_1149 polB2 polB2 rps8e rps8e Abm4_1141 Abm4_1141 Abm4_1139 Abm4_1139 cobA cobA Abm4_1031 Abm4_1031 tfs1 tfs1 nac nac Abm4_0977 Abm4_0977 Abm4_0926 Abm4_0926 Abm4_0921 Abm4_0921 rpl37ae rpl37ae Abm4_0915 Abm4_0915 hmgA hmgA rpl40e rpl40e mre11 mre11 Abm4_0848 Abm4_0848 Abm4_0818 Abm4_0818 rpl37e rpl37e Abm4_0797 Abm4_0797 rfcL rfcL rfcS rfcS Abm4_0767 Abm4_0767 ubiX ubiX Abm4_0733 Abm4_0733 rps27ae rps27ae rps24e rps24e Abm4_0716 Abm4_0716 rps6e rps6e rpl24e rpl24e rps28e rps28e rpl7ae rpl7ae Abm4_0708 Abm4_0708 endA endA priA priA priB priB Abm4_0639 Abm4_0639 cbiX2 cbiX2 cbiX1 cbiX1 Abm4_0561 Abm4_0561 rps17e rps17e hel308 hel308 Abm4_0526 Abm4_0526 truA truA Abm4_0487 Abm4_0487 Abm4_0453 Abm4_0453 Abm4_0444 Abm4_0444 dnaG dnaG Abm4_0410 Abm4_0410 thgL thgL Abm4_0394 Abm4_0394 Abm4_0388 Abm4_0388 Abm4_0377 Abm4_0377 Abm4_0372 Abm4_0372 rps10 rps10 rps7 rps7 rps12 rps12 rpl30e rpl30e rpl12 rpl12 rpl10 rpl10 rpl1 rpl1 rpl11 rpl11 spt5 spt5 tfe tfe Abm4_0236 Abm4_0236 rps3ae rps3ae Abm4_0213 Abm4_0213 Abm4_0211 Abm4_0211 rplX rplX rpl31e rpl31e rpl39e rpl39e rps19e rps19e Abm4_0193 Abm4_0193 tbp tbp fen fen Abm4_0133 Abm4_0133 Abm4_0116 Abm4_0116 Abm4_0098 Abm4_0098 rps15 rps15 albA albA nudC nudC Abm4_0021 Abm4_0021 Abm4_0004 Abm4_0004 Abm4_0001 Abm4_0001 Abm4_0488 Abm4_0488 top6A top6A Abm4_1479 Abm4_1479 hemA hemA dusA2 dusA2 Abm4_1503 Abm4_1503 trm1 trm1 polB1 polB1 Abm4_1567 Abm4_1567 Abm4_1568 Abm4_1568 Abm4_1570 Abm4_1570 gatB gatB dnaK dnaK Abm4_1629 Abm4_1629 nop10 nop10 rps27e rps27e rpl44e rpl44e tfs2 tfs2 pus10 pus10 rpl21e rpl21e Abm4_1672 Abm4_1672 Abm4_1676 Abm4_1676 rpaI rpaI Abm4_1713 Abm4_1713 rpl13 rpl13 rpl18e rpl18e rps11 rps11 rps4p rps4p rps13 rps13 cbf5p cbf5p Abm4_1248 Abm4_1248 rpl34e rpl34e rpl15 rpl15 rpl30 rpl30 rps5p rps5p rpl18 rpl18 rpl19e rpl19e Abm4_1259 Abm4_1259 rpl6p rpl6p rps8p rps8p rps14 rps14 rpl5p rpl5p rps4e rps4e rpl24 rpl24 rpl14 rpl14 rps17 rps17 rpl29 rpl29 rps3p rps3p rpl22 rpl22 rps19p rps19p rpl2p rpl2p rpl23 rpl23 rpl4p rpl4p rpl3p rpl3p Abm4_1278 Abm4_1278 prmA prmA pycA pycA Abm4_1297 Abm4_1297 Abm4_1317 Abm4_1317 dusA1 dusA1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Abm4_1355Macro domain-containing protein. (262 aa)
rnzRibonuclease Z Rnz; Zinc phosphodiesterase, which displays some tRNA 3'- processing endonuclease activity. Probably involved in tRNA maturation, by removing a 3'-trailer from precursor tRNA; Belongs to the RNase Z family. (297 aa)
mutS2DNA mismatch repair ATPase MutS family; Has ATPase and non-specific DNA-binding activities. Belongs to the DNA mismatch repair MutS family. Archaeal Muts2 subfamily. (641 aa)
Abm4_1426ATPase. (282 aa)
rps9pRibosomal protein S9P Rps9p; Belongs to the universal ribosomal protein uS9 family. (132 aa)
Abm4_1456ATPase RIL. (591 aa)
thi4Thiazole biosynthesis enzyme; Involved in the biosynthesis of the thiazole moiety of thiamine. Catalyzes the conversion of NAD and glycine to adenosine diphosphate 5-(2-hydroxyethyl)-4-methylthiazole-2-carboxylate (ADT), an adenylated thiazole intermediate, using free sulfide as a source of sulfur. (262 aa)
Abm4_1472RNA-binding protein. (199 aa)
top6BDNA topoisomerase VI subunit B; Relaxes both positive and negative superturns and exhibits a strong decatenase activity. (598 aa)
rps2pRibosomal protein S2P Rps2p; Belongs to the universal ribosomal protein uS2 family. (200 aa)
Abm4_1231Phosphomevalonate decarboxylase; Belongs to the MEMO1 family. (284 aa)
nthEndonuclease III Nth; DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N-glycosidic bond, leaving an AP (apurinic/apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'- phosphate. (215 aa)
xthExodeoxyribonuclease III Xth. (257 aa)
Abm4_1149Hydrolase HAD superfamily. (231 aa)
polB2DNA polymerase family B PolB2. (236 aa)
rps8eRibosomal protein S8e Rps8e. (125 aa)
Abm4_1141Staphylococcal nuclease domain-containing protein. (270 aa)
Abm4_1139DEAD/DEAH box helicase domain-containing protein; Belongs to the DEAD box helicase family. (432 aa)
cobAuroporphyrin-III C-methyltransferase CobA; Belongs to the precorrin methyltransferase family. (248 aa)
Abm4_1031Helicase. (973 aa)
tfs1Transcription factor S Tfs1; Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (106 aa)
nacNascent polypeptide-associated complex protein; Contacts the emerging nascent chain on the ribosome. Belongs to the NAC-alpha family. (116 aa)
Abm4_0977HTH domain-containing protein. (163 aa)
Abm4_0926Ribosomal protein L15e Rpl15e. (184 aa)
Abm4_0921Exosome subunit. (233 aa)
rpl37aeRibosomal protein L37Ae Rpl37ae; Binds to the 23S rRNA. (87 aa)
Abm4_0915Ribosomal biogenesis protein; Probably involved in the biogenesis of the ribosome. (171 aa)
hmgAhydroxymethylglutaryl-CoA reductase (NADPH) HmgA; Belongs to the HMG-CoA reductase family. (401 aa)
rpl40eRibosomal protein L40e Rpl40e; Belongs to the eukaryotic ribosomal protein eL40 family. (48 aa)
mre11DNA double-strand break repair protein Mre11; Part of the Rad50/Mre11 complex, which is involved in the early steps of DNA double-strand break (DSB) repair. The complex may facilitate opening of the processed DNA ends to aid in the recruitment of HerA and NurA. Mre11 binds to DSB ends and has both double-stranded 3'-5' exonuclease activity and single-stranded endonuclease activity. Belongs to the MRE11/RAD32 family. (380 aa)
Abm4_0848Archaeal histone. (67 aa)
Abm4_0818ATP-binding protein. (227 aa)
rpl37eRibosomal protein L37e Rpl37e; Binds to the 23S rRNA; Belongs to the eukaryotic ribosomal protein eL37 family. (61 aa)
Abm4_0797RNA-binding protein. (159 aa)
rfcLReplication factor C large subunit RfcL; Part of the RFC clamp loader complex which loads the PCNA sliding clamp onto DNA; Belongs to the activator 1 small subunits family. RfcL subfamily. (552 aa)
rfcSReplication factor C small subunit RfcS; Part of the RFC clamp loader complex which loads the PCNA sliding clamp onto DNA; Belongs to the activator 1 small subunits family. RfcS subfamily. (315 aa)
Abm4_0767HD domain-containing protein. (411 aa)
ubiX3-polyprenyl-4-hydroxybenzoate decarboxylase UbiX; Flavin prenyltransferase that catalyzes the synthesis of the prenylated FMN cofactor (prenyl-FMN) for 4-hydroxy-3-polyprenylbenzoic acid decarboxylase UbiD. The prenyltransferase is metal-independent and links a dimethylallyl moiety from dimethylallyl monophosphate (DMAP) to the flavin N5 and C6 atoms of FMN; Belongs to the UbiX/PAD1 family. (183 aa)
Abm4_07334Fe-4S iron sulfur cluster binding protein NifH/frxC family; Belongs to the NifH/BchL/ChlL family. (267 aa)
rps27aeRibosomal protein S27ae Rps27ae; Belongs to the eukaryotic ribosomal protein eS31 family. (51 aa)
rps24eRibosomal protein S24e Rps24e; Belongs to the eukaryotic ribosomal protein eS24 family. (103 aa)
Abm4_0716Hypothetical protein. (128 aa)
rps6eRibosomal protein S6e Rps6e; Belongs to the eukaryotic ribosomal protein eS6 family. (126 aa)
rpl24eRibosomal protein L24e Rpl24e; Binds to the 23S rRNA. (53 aa)
rps28eRibosomal protein S28e Rps28e; Belongs to the eukaryotic ribosomal protein eS28 family. (68 aa)
rpl7aeRibosomal protein L7Ae Rpl7ae; Multifunctional RNA-binding protein that recognizes the K- turn motif in ribosomal RNA, the RNA component of RNase P, box H/ACA, box C/D and box C'/D' sRNAs. (123 aa)
Abm4_0708Archaeal histone. (67 aa)
endAtRNA intron endonuclease EndA. (171 aa)
priADNA primase small subunit PriA; Catalytic subunit of DNA primase, an RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. The small subunit contains the primase catalytic core and has DNA synthesis activity on its own. Binding to the large subunit stabilizes and modulates the activity, increasing the rate of DNA synthesis while decreasing the length of the DNA fragments, and conferring RNA synthesis capability. The DNA polymerase activity may enable DNA primase to also catalyze primer extension after primer synthe [...] (334 aa)
priBDNA primase large subunit PriB; Regulatory subunit of DNA primase, an RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. Stabilizes and modulates the activity of the small subunit, increasing the rate of DNA synthesis, and conferring RNA synthesis capability. The DNA polymerase activity may enable DNA primase to also catalyze primer extension after primer synthesis. May also play a role in DNA repair. (452 aa)
Abm4_0639SAM-dependent methyltransferase. (198 aa)
cbiX2Cobalamin biosynthesis protein CbiX2. (307 aa)
cbiX1Cobalamin biosynthesis protein CbiX1; Catalyzes the insertion of Co(2+) into sirohydrochlorin as part of the anaerobic pathway to cobalamin biosynthesis. Involved in the biosynthesis of the unique nickel-containing tetrapyrrole coenzyme F430, the prosthetic group of methyl-coenzyme M reductase (MCR), which plays a key role in methanogenesis and anaerobic methane oxidation. Catalyzes the insertion of Ni(2+) into sirohydrochlorin to yield Ni- sirohydrochlorin. (152 aa)
Abm4_0561SAM-dependent methyltransferase UbiE family. (226 aa)
rps17eRibosomal protein S17e Rps17e; Belongs to the eukaryotic ribosomal protein eS17 family. (64 aa)
hel308DEAD/DEAH box helicase domain-containing protein; DNA-dependent ATPase and 3'-5' DNA helicase that may be involved in repair of stalled replication forks. (694 aa)
Abm4_0526Archaeal histone. (66 aa)
truAtRNA pseudouridine synthase A TruA; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs; Belongs to the tRNA pseudouridine synthase TruA family. (296 aa)
Abm4_0487GTP-binding protein. (345 aa)
Abm4_0453Hypothetical protein; Belongs to the UPF0145 family. (107 aa)
Abm4_0444H/ACA RNA-protein complex component Gar1. (93 aa)
dnaGDNA primase DnaG; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. Also part of the exosome, which is a complex involved in RNA degradation. Acts as a poly(A)-binding protein that enhances the interaction between heteropolymeric, adenine-rich transcripts and the exosome. (427 aa)
Abm4_0410Hypothetical protein; Belongs to the UPF0145 family. (113 aa)
thgLtRNA(His) guanylyltransferase ThgL. (282 aa)
Abm4_0394CBS domain-containing protein. (281 aa)
Abm4_0388Hypothetical protein. (417 aa)
Abm4_0377Cdc6 family replication initiation protein Cdc6-3. (275 aa)
Abm4_0372ADP-ribosylglycohydrolase. (314 aa)
rps10Ribosomal protein S10P Rps10p; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family. (102 aa)
rps7Ribosomal protein S7P Rps7p; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center; Belongs to the universal ribosomal protein uS7 family. (187 aa)
rps12Ribosomal protein S12P Rps12p; With S4 and S5 plays an important role in translational accuracy. Located at the interface of the 30S and 50S subunits. Belongs to the universal ribosomal protein uS12 family. (141 aa)
rpl30eRibosomal protein L30e Rpl30e; Belongs to the eukaryotic ribosomal protein eL30 family. (99 aa)
rpl12Ribosomal protein L12P Rpl12p; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the eukaryotic ribosomal protein P1/P2 family. (100 aa)
rpl10Acidic ribosomal protein P0 RplPO; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family. (336 aa)
rpl1Ribosomal protein L1P Rpl1p; Binds directly to 23S rRNA. Probably involved in E site tRNA release. (212 aa)
rpl11Ribosomal protein L11P Rpl11p; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors; Belongs to the universal ribosomal protein uL11 family. (161 aa)
spt5Ribosomal protein L24 family; Stimulates transcription elongation; Belongs to the archaeal Spt5 family. (160 aa)
tfeTranscription initiation factor TFIIE alpha subunit Tfe; Transcription factor that plays a role in the activation of archaeal genes transcribed by RNA polymerase. Facilitates transcription initiation by enhancing TATA-box recognition by TATA-box-binding protein (Tbp), and transcription factor B (Tfb) and RNA polymerase recruitment. Not absolutely required for transcription in vitro, but particularly important in cases where Tbp or Tfb function is not optimal. It dynamically alters the nucleic acid-binding properties of RNA polymerases by stabilizing the initiation complex and destabili [...] (151 aa)
Abm4_0236AAA family ATPase CDC48 subfamily. (738 aa)
rps3aeRibosomal protein S3Ae Rps3ae; Belongs to the eukaryotic ribosomal protein eS1 family. (191 aa)
Abm4_0213Cdc6 family replication initiation protein Cdc6-2; Involved in regulation of DNA replication. (372 aa)
Abm4_0211Aminotransferase class V family. (381 aa)
rplXRibosomal protein LX RplX. (74 aa)
rpl31eRibosomal protein L31e Rpl31e; Belongs to the ribosomal protein L31e family. (88 aa)
rpl39eRibosomal protein L39e Rpl39e; Belongs to the eukaryotic ribosomal protein eL39 family. (51 aa)
rps19eRibosomal protein S19e Rps19e; May be involved in maturation of the 30S ribosomal subunit. Belongs to the eukaryotic ribosomal protein eS19 family. (146 aa)
Abm4_0193Hypothetical protein; Broad-specificity nucleoside monophosphate (NMP) kinase that catalyzes the reversible transfer of the terminal phosphate group between nucleoside triphosphates and monophosphates. Belongs to the adenylate kinase family. AK6 subfamily. (198 aa)
tbpTATA-box binding protein Tbp; General factor that plays a role in the activation of archaeal genes transcribed by RNA polymerase. Binds specifically to the TATA box promoter element which lies close to the position of transcription initiation. (181 aa)
fenFlap endonuclease Fen; Structure-specific nuclease with 5'-flap endonuclease and 5'- 3' exonuclease activities involved in DNA replication and repair. During DNA replication, cleaves the 5'-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5'-end of a downstream Okazaki fragment. Binds the unpaired 3'-DNA end and kinks the DNA to facilitate 5' cleavage specificity. Cleaves one nucleotide into the double-stranded DNA from the junction in flap DNA, leaving a nick for ligation. Also involved in the base excision repair (BER) pathway. [...] (327 aa)
Abm4_0133SAM-dependent methyltransferase. (203 aa)
Abm4_0116Anion-transporting ATPase. (336 aa)
Abm4_0098Hef nuclease. (788 aa)
rps15Ribosomal protein S15P Rps15p. (132 aa)
albADNA-binding protein Alba; Binds double-stranded DNA tightly but without sequence specificity. It is distributed uniformly and abundantly on the chromosome, suggesting a role in chromatin architecture. However, it does not significantly compact DNA. Binds rRNA and mRNA in vivo. May play a role in maintaining the structural and functional stability of RNA, and, perhaps, ribosomes; Belongs to the histone-like Alba family. (92 aa)
nudCNADH pyrophosphatase NudC. (267 aa)
Abm4_0021Staphylococcal nuclease domain-containing protein. (168 aa)
Abm4_0004Fumarylacetoacetate hydrolase family protein. (260 aa)
Abm4_0001Cdc6 family replication initiation protein Cdc6-1; Involved in regulation of DNA replication. (385 aa)
Abm4_0488AMMECR1 domain-containing protein. (187 aa)
top6ADNA topoisomerase VI subunit A; Relaxes both positive and negative superturns and exhibits a strong decatenase activity; Belongs to the TOP6A family. (371 aa)
Abm4_1479Endonuclease IV. (277 aa)
hemAglutamyl-tRNA reductase HemA; Catalyzes the NADPH-dependent reduction of glutamyl-tRNA(Glu) to glutamate 1-semialdehyde (GSA). (412 aa)
dusA2tRNA-dihydrouridine synthase DusA2. (236 aa)
Abm4_1503Ribosomal protein L10e Rpl10e. (160 aa)
trm1N2,N2-dimethylguanosine tRNA methyltransferase Trm1; Dimethylates a single guanine residue at position 26 of a number of tRNAs using S-adenosyl-L-methionine as donor of the methyl groups; Belongs to the class I-like SAM-binding methyltransferase superfamily. Trm1 family. (398 aa)
polB1DNA polymerase family B PolB1. (615 aa)
Abm4_1567CBS domain-containing protein. (274 aa)
Abm4_1568CBS domain-containing protein. (314 aa)
Abm4_15706-pyruvoyl tetrahydropterin synthase/QueD family protein. (171 aa)
gatBAsp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit B GatB; Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl- tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp- tRNA(Asn) or phospho-Glu-tRNA(Gln); Belongs to the GatB/GatE family. GatB subfamily. (450 aa)
dnaKMolecular chaperone DnaK; Acts as a chaperone. (632 aa)
Abm4_1629Iron-containing alcohol dehydrogenase. (393 aa)
nop10H/ACA RNA-protein complex component Nop10p; Involved in ribosome biogenesis; more specifically in 18S rRNA pseudouridylation and in cleavage of pre-rRNA. (53 aa)
rps27eRibosomal protein S27e Rps27e. (59 aa)
rpl44eRibosomal protein L44e Rpl44e; Binds to the 23S rRNA. (92 aa)
tfs2Transcription factor S Tfs2; Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (105 aa)
pus10Pseudouridylate synthase; Responsible for synthesis of pseudouridine from uracil-54 and uracil-55 in the psi GC loop of transfer RNAs. (409 aa)
rpl21eRibosomal protein L21e Rpl21e; Belongs to the eukaryotic ribosomal protein eL21 family. (96 aa)
Abm4_1672Peptidyl-prolyl cis-trans isomerase. (142 aa)
Abm4_1676ATP-dependent DNA helicase. (621 aa)
rpaIReplication factor A RpaI. (789 aa)
Abm4_1713Nucleotide sugar dehydrogenase. (442 aa)
rpl13Ribosomal protein L13P Rpl13p; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. (140 aa)
rpl18eRibosomal protein L18e Rpl18e; Belongs to the eukaryotic ribosomal protein eL18 family. (121 aa)
rps11Ribosomal protein S11P Rps11p; Located on the platform of the 30S subunit. Belongs to the universal ribosomal protein uS11 family. (130 aa)
rps4pRibosomal protein S4P Rps4p; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. (180 aa)
rps13Ribosomal protein S13P Rps13p; Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits; these bridges are implicated in subunit movement; Belongs to the universal ribosomal protein uS13 family. (153 aa)
cbf5pH/ACA RNA-protein complex component Cbf5p; Could be responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs; Belongs to the pseudouridine synthase TruB family. Type 2 subfamily. (320 aa)
Abm4_1248Ribosomal protein L14e Rpl14e. (73 aa)
rpl34eRibosomal protein L34e Rpl34e; Belongs to the eukaryotic ribosomal protein eL34 family. (88 aa)
rpl15Ribosomal protein L15P Rpl15p; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family. (145 aa)
rpl30Ribosomal protein L30P Rpl30p. (152 aa)
rps5pRibosomal protein S5P Rps5p; With S4 and S12 plays an important role in translational accuracy. (214 aa)
rpl18Ribosomal protein L18P Rpl18p; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. (193 aa)
rpl19eRibosomal protein L19e Rpl19e; Binds to the 23S rRNA; Belongs to the eukaryotic ribosomal protein eL19 family. (149 aa)
Abm4_1259Ribosomal protein L32e Rpl32e. (108 aa)
rpl6pRibosomal protein L6P Rpl6p; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family. (178 aa)
rps8pRibosomal protein S8P Rps8p; One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; Belongs to the universal ribosomal protein uS8 family. (130 aa)
rps14Ribosomal protein S14P Rps14p; Binds 16S rRNA, required for the assembly of 30S particles. (47 aa)
rpl5pRibosomal protein L5P Rpl5p; This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. May contact the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs. (171 aa)
rps4eRibosomal protein S4e Rps4e; Belongs to the eukaryotic ribosomal protein eS4 family. (241 aa)
rpl24Ribosomal protein L24P Rpl24p; Located at the polypeptide exit tunnel on the outside of the subunit. (116 aa)
rpl14Ribosomal protein L14P Rpl14p; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family. (132 aa)
rps17Ribosomal protein S17P Rps17p; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA. (105 aa)
rpl29Ribosomal protein L29P Rpl29p; Belongs to the universal ribosomal protein uL29 family. (68 aa)
rps3pRibosomal protein S3P Rps3p; Binds the lower part of the 30S subunit head. Belongs to the universal ribosomal protein uS3 family. (254 aa)
rpl22Ribosomal protein L22P Rpl22p; The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome. (154 aa)
rps19pRibosomal protein S19P Rps19p; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA. (136 aa)
rpl2pRibosomal protein L2P Rpl2p; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family. (241 aa)
rpl23Ribosomal protein L23P Rpl23p; Binds to 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Belongs to the universal ribosomal protein uL23 family. (86 aa)
rpl4pRibosomal protein L4p Rpl4p; Forms part of the polypeptide exit tunnel. (254 aa)
rpl3pRibosomal protein L3P Rpl3p; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. (336 aa)
Abm4_1278Hypothetical protein. (272 aa)
prmARibosomal protein L11 methyltransferase PrmA. (224 aa)
pycAPyruvate carboxylase subunit A PycA. (495 aa)
Abm4_1297Iron-containing alcohol dehydrogenase. (398 aa)
Abm4_1317Translation initiation factor aIF-2B alpha subunit; Catalyzes the interconversion of methylthioribose-1-phosphate (MTR-1-P) into methylthioribulose-1-phosphate (MTRu-1-P). Belongs to the EIF-2B alpha/beta/delta subunits family. MtnA subfamily. (309 aa)
dusA1tRNA-dihydrouridine synthase DusA1. (329 aa)
Your Current Organism:
Methanobrevibacter sp. AbM4
NCBI taxonomy Id: 224719
Other names: M. sp. AbM4
Server load: low (30%) [HD]