(6 nodes) Large ribosomal subunit rRNA binding network (Methanobrevibacter sp. AbM4)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	rplX	Ribosomal protein LX RplX. (74 aa)
	rpl11	Ribosomal protein L11P Rpl11p; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors; Belongs to the universal ribosomal protein uL11 family. (161 aa)
	rpl10	Acidic ribosomal protein P0 RplPO; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family. (336 aa)
	rpl37ae	Ribosomal protein L37Ae Rpl37ae; Binds to the 23S rRNA. (87 aa)
	rpl19e	Ribosomal protein L19e Rpl19e; Binds to the 23S rRNA; Belongs to the eukaryotic ribosomal protein eL19 family. (149 aa)
	rpl44e	Ribosomal protein L44e Rpl44e; Binds to the 23S rRNA. (92 aa)

Your Current Organism:

Methanobrevibacter sp. AbM4

NCBI taxonomy Id: 224719
Other names: M. sp. AbM4

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
rpl10	rpl11	Abm4_0258	Abm4_0256	Acidic ribosomal protein P0 RplPO; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family.	Ribosomal protein L11P Rpl11p; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors; Belongs to the universal ribosomal protein uL11 family.	0.999
rpl10	rpl19e	Abm4_0258	Abm4_1258	Acidic ribosomal protein P0 RplPO; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family.	Ribosomal protein L19e Rpl19e; Binds to the 23S rRNA; Belongs to the eukaryotic ribosomal protein eL19 family.	0.999
rpl10	rpl37ae	Abm4_0258	Abm4_0917	Acidic ribosomal protein P0 RplPO; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family.	Ribosomal protein L37Ae Rpl37ae; Binds to the 23S rRNA.	0.994
rpl10	rpl44e	Abm4_0258	Abm4_1644	Acidic ribosomal protein P0 RplPO; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family.	Ribosomal protein L44e Rpl44e; Binds to the 23S rRNA.	0.994
rpl10	rplX	Abm4_0258	Abm4_0202	Acidic ribosomal protein P0 RplPO; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family.	Ribosomal protein LX RplX.	0.995
rpl11	rpl10	Abm4_0256	Abm4_0258	Ribosomal protein L11P Rpl11p; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors; Belongs to the universal ribosomal protein uL11 family.	Acidic ribosomal protein P0 RplPO; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family.	0.999
rpl11	rpl19e	Abm4_0256	Abm4_1258	Ribosomal protein L11P Rpl11p; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors; Belongs to the universal ribosomal protein uL11 family.	Ribosomal protein L19e Rpl19e; Binds to the 23S rRNA; Belongs to the eukaryotic ribosomal protein eL19 family.	0.994
rpl11	rpl37ae	Abm4_0256	Abm4_0917	Ribosomal protein L11P Rpl11p; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors; Belongs to the universal ribosomal protein uL11 family.	Ribosomal protein L37Ae Rpl37ae; Binds to the 23S rRNA.	0.991
rpl11	rpl44e	Abm4_0256	Abm4_1644	Ribosomal protein L11P Rpl11p; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors; Belongs to the universal ribosomal protein uL11 family.	Ribosomal protein L44e Rpl44e; Binds to the 23S rRNA.	0.987
rpl11	rplX	Abm4_0256	Abm4_0202	Ribosomal protein L11P Rpl11p; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors; Belongs to the universal ribosomal protein uL11 family.	Ribosomal protein LX RplX.	0.994
rpl19e	rpl10	Abm4_1258	Abm4_0258	Ribosomal protein L19e Rpl19e; Binds to the 23S rRNA; Belongs to the eukaryotic ribosomal protein eL19 family.	Acidic ribosomal protein P0 RplPO; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family.	0.999
rpl19e	rpl11	Abm4_1258	Abm4_0256	Ribosomal protein L19e Rpl19e; Binds to the 23S rRNA; Belongs to the eukaryotic ribosomal protein eL19 family.	Ribosomal protein L11P Rpl11p; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors; Belongs to the universal ribosomal protein uL11 family.	0.994
rpl19e	rpl37ae	Abm4_1258	Abm4_0917	Ribosomal protein L19e Rpl19e; Binds to the 23S rRNA; Belongs to the eukaryotic ribosomal protein eL19 family.	Ribosomal protein L37Ae Rpl37ae; Binds to the 23S rRNA.	0.999
rpl19e	rpl44e	Abm4_1258	Abm4_1644	Ribosomal protein L19e Rpl19e; Binds to the 23S rRNA; Belongs to the eukaryotic ribosomal protein eL19 family.	Ribosomal protein L44e Rpl44e; Binds to the 23S rRNA.	0.999
rpl19e	rplX	Abm4_1258	Abm4_0202	Ribosomal protein L19e Rpl19e; Binds to the 23S rRNA; Belongs to the eukaryotic ribosomal protein eL19 family.	Ribosomal protein LX RplX.	0.999
rpl37ae	rpl10	Abm4_0917	Abm4_0258	Ribosomal protein L37Ae Rpl37ae; Binds to the 23S rRNA.	Acidic ribosomal protein P0 RplPO; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family.	0.994
rpl37ae	rpl11	Abm4_0917	Abm4_0256	Ribosomal protein L37Ae Rpl37ae; Binds to the 23S rRNA.	Ribosomal protein L11P Rpl11p; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors; Belongs to the universal ribosomal protein uL11 family.	0.991
rpl37ae	rpl19e	Abm4_0917	Abm4_1258	Ribosomal protein L37Ae Rpl37ae; Binds to the 23S rRNA.	Ribosomal protein L19e Rpl19e; Binds to the 23S rRNA; Belongs to the eukaryotic ribosomal protein eL19 family.	0.999
rpl37ae	rpl44e	Abm4_0917	Abm4_1644	Ribosomal protein L37Ae Rpl37ae; Binds to the 23S rRNA.	Ribosomal protein L44e Rpl44e; Binds to the 23S rRNA.	0.999
rpl37ae	rplX	Abm4_0917	Abm4_0202	Ribosomal protein L37Ae Rpl37ae; Binds to the 23S rRNA.	Ribosomal protein LX RplX.	0.997