(14 nodes) Cytosolic ribosome network (Methanobrevibacter sp. AbM4)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	rpl24e	Ribosomal protein L24e Rpl24e; Binds to the 23S rRNA. (53 aa)
	rps19e	Ribosomal protein S19e Rps19e; May be involved in maturation of the 30S ribosomal subunit. Belongs to the eukaryotic ribosomal protein eS19 family. (146 aa)
	rpl31e	Ribosomal protein L31e Rpl31e; Belongs to the ribosomal protein L31e family. (88 aa)
	rps3ae	Ribosomal protein S3Ae Rps3ae; Belongs to the eukaryotic ribosomal protein eS1 family. (191 aa)
	rpl30e	Ribosomal protein L30e Rpl30e; Belongs to the eukaryotic ribosomal protein eL30 family. (99 aa)
	rps17e	Ribosomal protein S17e Rps17e; Belongs to the eukaryotic ribosomal protein eS17 family. (64 aa)
	rps24e	Ribosomal protein S24e Rps24e; Belongs to the eukaryotic ribosomal protein eS24 family. (103 aa)
	rpl37ae	Ribosomal protein L37Ae Rpl37ae; Binds to the 23S rRNA. (87 aa)
	Abm4_0926	Ribosomal protein L15e Rpl15e. (184 aa)
	rpl34e	Ribosomal protein L34e Rpl34e; Belongs to the eukaryotic ribosomal protein eL34 family. (88 aa)
	rpl19e	Ribosomal protein L19e Rpl19e; Binds to the 23S rRNA; Belongs to the eukaryotic ribosomal protein eL19 family. (149 aa)
	Abm4_1259	Ribosomal protein L32e Rpl32e. (108 aa)
	rps19p	Ribosomal protein S19P Rps19p; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA. (136 aa)
	rpl21e	Ribosomal protein L21e Rpl21e; Belongs to the eukaryotic ribosomal protein eL21 family. (96 aa)

Your Current Organism:

Methanobrevibacter sp. AbM4

NCBI taxonomy Id: 224719
Other names: M. sp. AbM4

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Abm4_0926	Abm4_1259	Abm4_0926	Abm4_1259	Ribosomal protein L15e Rpl15e.	Ribosomal protein L32e Rpl32e.	0.999
Abm4_0926	rpl19e	Abm4_0926	Abm4_1258	Ribosomal protein L15e Rpl15e.	Ribosomal protein L19e Rpl19e; Binds to the 23S rRNA; Belongs to the eukaryotic ribosomal protein eL19 family.	0.999
Abm4_0926	rpl21e	Abm4_0926	Abm4_1658	Ribosomal protein L15e Rpl15e.	Ribosomal protein L21e Rpl21e; Belongs to the eukaryotic ribosomal protein eL21 family.	0.999
Abm4_0926	rpl24e	Abm4_0926	Abm4_0711	Ribosomal protein L15e Rpl15e.	Ribosomal protein L24e Rpl24e; Binds to the 23S rRNA.	0.999
Abm4_0926	rpl30e	Abm4_0926	Abm4_0350	Ribosomal protein L15e Rpl15e.	Ribosomal protein L30e Rpl30e; Belongs to the eukaryotic ribosomal protein eL30 family.	0.999
Abm4_0926	rpl31e	Abm4_0926	Abm4_0200	Ribosomal protein L15e Rpl15e.	Ribosomal protein L31e Rpl31e; Belongs to the ribosomal protein L31e family.	0.999
Abm4_0926	rpl34e	Abm4_0926	Abm4_1250	Ribosomal protein L15e Rpl15e.	Ribosomal protein L34e Rpl34e; Belongs to the eukaryotic ribosomal protein eL34 family.	0.999
Abm4_0926	rpl37ae	Abm4_0926	Abm4_0917	Ribosomal protein L15e Rpl15e.	Ribosomal protein L37Ae Rpl37ae; Binds to the 23S rRNA.	0.999
Abm4_0926	rps17e	Abm4_0926	Abm4_0545	Ribosomal protein L15e Rpl15e.	Ribosomal protein S17e Rps17e; Belongs to the eukaryotic ribosomal protein eS17 family.	0.999
Abm4_0926	rps19e	Abm4_0926	Abm4_0196	Ribosomal protein L15e Rpl15e.	Ribosomal protein S19e Rps19e; May be involved in maturation of the 30S ribosomal subunit. Belongs to the eukaryotic ribosomal protein eS19 family.	0.999
Abm4_0926	rps19p	Abm4_0926	Abm4_1273	Ribosomal protein L15e Rpl15e.	Ribosomal protein S19P Rps19p; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA.	0.999
Abm4_0926	rps24e	Abm4_0926	Abm4_0720	Ribosomal protein L15e Rpl15e.	Ribosomal protein S24e Rps24e; Belongs to the eukaryotic ribosomal protein eS24 family.	0.999
Abm4_0926	rps3ae	Abm4_0926	Abm4_0221	Ribosomal protein L15e Rpl15e.	Ribosomal protein S3Ae Rps3ae; Belongs to the eukaryotic ribosomal protein eS1 family.	0.999
Abm4_1259	Abm4_0926	Abm4_1259	Abm4_0926	Ribosomal protein L32e Rpl32e.	Ribosomal protein L15e Rpl15e.	0.999
Abm4_1259	rpl19e	Abm4_1259	Abm4_1258	Ribosomal protein L32e Rpl32e.	Ribosomal protein L19e Rpl19e; Binds to the 23S rRNA; Belongs to the eukaryotic ribosomal protein eL19 family.	0.999
Abm4_1259	rpl21e	Abm4_1259	Abm4_1658	Ribosomal protein L32e Rpl32e.	Ribosomal protein L21e Rpl21e; Belongs to the eukaryotic ribosomal protein eL21 family.	0.999
Abm4_1259	rpl24e	Abm4_1259	Abm4_0711	Ribosomal protein L32e Rpl32e.	Ribosomal protein L24e Rpl24e; Binds to the 23S rRNA.	0.999
Abm4_1259	rpl30e	Abm4_1259	Abm4_0350	Ribosomal protein L32e Rpl32e.	Ribosomal protein L30e Rpl30e; Belongs to the eukaryotic ribosomal protein eL30 family.	0.999
Abm4_1259	rpl31e	Abm4_1259	Abm4_0200	Ribosomal protein L32e Rpl32e.	Ribosomal protein L31e Rpl31e; Belongs to the ribosomal protein L31e family.	0.999
Abm4_1259	rpl34e	Abm4_1259	Abm4_1250	Ribosomal protein L32e Rpl32e.	Ribosomal protein L34e Rpl34e; Belongs to the eukaryotic ribosomal protein eL34 family.	0.999