Your Input: | |
| | Abm4_0001 | Cdc6 family replication initiation protein Cdc6-1; Involved in regulation of DNA replication. (385 aa) |
| | hcgA | BioB family protein HcgA. (333 aa) |
| | sdhA | Succinate dehydrogenase/fumarate reductase flavoprotein subunit SdhA. (558 aa) |
| | nudC | NADH pyrophosphatase NudC. (267 aa) |
| | albA | DNA-binding protein Alba; Binds double-stranded DNA tightly but without sequence specificity. It is distributed uniformly and abundantly on the chromosome, suggesting a role in chromatin architecture. However, it does not significantly compact DNA. Binds rRNA and mRNA in vivo. May play a role in maintaining the structural and functional stability of RNA, and, perhaps, ribosomes; Belongs to the histone-like Alba family. (92 aa) |
| | leuA | 2-isopropylmalate synthase LeuA; Belongs to the alpha-IPM synthase/homocitrate synthase family. (514 aa) |
| | Abm4_0044 | Hypothetical protein. (252 aa) |
| | ilvD | Dihydroxy-acid dehydratase IlvD; Belongs to the IlvD/Edd family. (551 aa) |
| | Abm4_0051 | Signal peptidase I. (140 aa) |
| | rps15 | Ribosomal protein S15P Rps15p. (132 aa) |
| | Abm4_0116 | Anion-transporting ATPase. (336 aa) |
| | Abm4_0119 | Metallophosphoesterase. (356 aa) |
| | Abm4_0159 | Glycosyl transferase GT2 family. (719 aa) |
| | fen | Flap endonuclease Fen; Structure-specific nuclease with 5'-flap endonuclease and 5'- 3' exonuclease activities involved in DNA replication and repair. During DNA replication, cleaves the 5'-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5'-end of a downstream Okazaki fragment. Binds the unpaired 3'-DNA end and kinks the DNA to facilitate 5' cleavage specificity. Cleaves one nucleotide into the double-stranded DNA from the junction in flap DNA, leaving a nick for ligation. Also involved in the base excision repair (BER) pathway. [...] (327 aa) |
| | aksA | Homocitrate synthase AksA; Belongs to the alpha-IPM synthase/homocitrate synthase family. (390 aa) |
| | cyaA | Adenylate cyclase CyaA. (182 aa) |
| | tbp | TATA-box binding protein Tbp; General factor that plays a role in the activation of archaeal genes transcribed by RNA polymerase. Binds specifically to the TATA box promoter element which lies close to the position of transcription initiation. (181 aa) |
| | Abm4_0186 | Oligosaccharyl transferase. (906 aa) |
| | Abm4_0193 | Hypothetical protein; Broad-specificity nucleoside monophosphate (NMP) kinase that catalyzes the reversible transfer of the terminal phosphate group between nucleoside triphosphates and monophosphates. Belongs to the adenylate kinase family. AK6 subfamily. (198 aa) |
| | rps19e | Ribosomal protein S19e Rps19e; May be involved in maturation of the 30S ribosomal subunit. Belongs to the eukaryotic ribosomal protein eS19 family. (146 aa) |
| | rpl31e | Ribosomal protein L31e Rpl31e; Belongs to the ribosomal protein L31e family. (88 aa) |
| | rplX | Ribosomal protein LX RplX. (74 aa) |
| | ftsY | Signal recognition particle receptor FtsY; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Acts as a receptor for the complex formed by the signal recognition particle (SRP) and the ribosome-nascent chain (RNC). (506 aa) |
| | Abm4_0211 | Aminotransferase class V family. (381 aa) |
| | Abm4_0213 | Cdc6 family replication initiation protein Cdc6-2; Involved in regulation of DNA replication. (372 aa) |
| | rps3ae | Ribosomal protein S3Ae Rps3ae; Belongs to the eukaryotic ribosomal protein eS1 family. (191 aa) |
| | Abm4_0222 | Hypothetical protein. (232 aa) |
| | dnlI | ATP-dependent DNA ligase DnlI; DNA ligase that seals nicks in double-stranded DNA during DNA replication, DNA recombination and DNA repair. (550 aa) |
| | tfe | Transcription initiation factor TFIIE alpha subunit Tfe; Transcription factor that plays a role in the activation of archaeal genes transcribed by RNA polymerase. Facilitates transcription initiation by enhancing TATA-box recognition by TATA-box-binding protein (Tbp), and transcription factor B (Tfb) and RNA polymerase recruitment. Not absolutely required for transcription in vitro, but particularly important in cases where Tbp or Tfb function is not optimal. It dynamically alters the nucleic acid-binding properties of RNA polymerases by stabilizing the initiation complex and destabili [...] (151 aa) |
| | rpl11 | Ribosomal protein L11P Rpl11p; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors; Belongs to the universal ribosomal protein uL11 family. (161 aa) |
| | rpl1 | Ribosomal protein L1P Rpl1p; Binds directly to 23S rRNA. Probably involved in E site tRNA release. (212 aa) |
| | rpl10 | Acidic ribosomal protein P0 RplPO; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family. (336 aa) |
| | rpl12 | Ribosomal protein L12P Rpl12p; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the eukaryotic ribosomal protein P1/P2 family. (100 aa) |
| | radB | DNA repair and recombination protein RadB; Involved in DNA repair and in homologous recombination. May regulate the cleavage reactions of the branch-structured DNA. Has a very weak ATPase activity that is not stimulated by DNA. Binds DNA but does not promote DNA strands exchange. (268 aa) |
| | neuB | N-acetyl neuramic acid synthetase NeuB. (351 aa) |
| | Abm4_0304 | Glycosyl transferase GT4 family. (396 aa) |
| | Abm4_0306 | Digeranylgeranylglyceryl phosphate synthase; Prenyltransferase that catalyzes the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C2 hydroxyl of (S)-3-O-geranylgeranylglyceryl phosphate (GGGP). This reaction is the second ether-bond-formation step in the biosynthesis of archaeal membrane lipids. (284 aa) |
| | taw1 | tRNA-modifying enzyme; Component of the wyosine derivatives biosynthesis pathway that catalyzes the condensation of N-methylguanine with 2 carbon atoms from pyruvate to form the tricyclic 4-demethylwyosine (imG-14) on guanosine-37 of tRNA(Phe). (306 aa) |
| | Abm4_0335 | Acetyltransferase GNAT family. (202 aa) |
| | rpl30e | Ribosomal protein L30e Rpl30e; Belongs to the eukaryotic ribosomal protein eL30 family. (99 aa) |
| | rps12 | Ribosomal protein S12P Rps12p; With S4 and S5 plays an important role in translational accuracy. Located at the interface of the 30S and 50S subunits. Belongs to the universal ribosomal protein uS12 family. (141 aa) |
| | rps7 | Ribosomal protein S7P Rps7p; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center; Belongs to the universal ribosomal protein uS7 family. (187 aa) |
| | rps10 | Ribosomal protein S10P Rps10p; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family. (102 aa) |
| | Abm4_0363 | Cation-translocating P-type ATPase. (882 aa) |
| | Abm4_0368 | Adhesin-like protein with PMBR domain. (379 aa) |
| | Abm4_0372 | ADP-ribosylglycohydrolase. (314 aa) |
| | Abm4_0374 | Hypothetical protein. (425 aa) |
| | Abm4_0377 | Cdc6 family replication initiation protein Cdc6-3. (275 aa) |
| | Abm4_0405 | Hypothetical protein. (138 aa) |
| | Abm4_0419 | 2-methylcitrate synthase/citrate synthase II PrpC/CitZ. (278 aa) |
| | ahaF | A1A0 archaeal ATP synthase subunit F AhaF; Produces ATP from ADP in the presence of a proton gradient across the membrane. (104 aa) |
| | dnaG | DNA primase DnaG; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. Also part of the exosome, which is a complex involved in RNA degradation. Acts as a poly(A)-binding protein that enhances the interaction between heteropolymeric, adenine-rich transcripts and the exosome. (427 aa) |
| | Abm4_0444 | H/ACA RNA-protein complex component Gar1. (93 aa) |
| | Abm4_0468 | Transcriptional regulator TrmB family. (261 aa) |
| | Abm4_0483 | Transporter. (300 aa) |
| | Abm4_0487 | GTP-binding protein. (345 aa) |
| | Abm4_0488 | AMMECR1 domain-containing protein. (187 aa) |
| | argC | N-acetyl-gamma-glutamyl-phosphate reductase ArgC; Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde. Belongs to the NAGSA dehydrogenase family. Type 1 subfamily. (347 aa) |
| | truA | tRNA pseudouridine synthase A TruA; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs; Belongs to the tRNA pseudouridine synthase TruA family. (296 aa) |
| | Abm4_0525 | MiaB-like tRNA modifying enzyme. (429 aa) |
| | Abm4_0526 | Archaeal histone. (66 aa) |
| | Abm4_0531 | Hypothetical protein. (74 aa) |
| | hel308 | DEAD/DEAH box helicase domain-containing protein; DNA-dependent ATPase and 3'-5' DNA helicase that may be involved in repair of stalled replication forks. (694 aa) |
| | Abm4_0536 | Cupin domain-containing protein. (138 aa) |
| | Abm4_0537 | Glycosyl transferase GT4 family. (363 aa) |
| | rps17e | Ribosomal protein S17e Rps17e; Belongs to the eukaryotic ribosomal protein eS17 family. (64 aa) |
| | Abm4_0563 | hydroxymethylglutaryl-CoA synthase; Belongs to the thiolase-like superfamily. UPF0219 family. (346 aa) |
| | Abm4_0573 | Response regulator/glycosyl transferase GT2 family. (682 aa) |
| | Abm4_0589 | Response regulator/glycosyl transferase GT2 family. (797 aa) |
| | cbiX1 | Cobalamin biosynthesis protein CbiX1; Catalyzes the insertion of Co(2+) into sirohydrochlorin as part of the anaerobic pathway to cobalamin biosynthesis. Involved in the biosynthesis of the unique nickel-containing tetrapyrrole coenzyme F430, the prosthetic group of methyl-coenzyme M reductase (MCR), which plays a key role in methanogenesis and anaerobic methane oxidation. Catalyzes the insertion of Ni(2+) into sirohydrochlorin to yield Ni- sirohydrochlorin. (152 aa) |
| | cbiX2 | Cobalamin biosynthesis protein CbiX2. (307 aa) |
| | priB | DNA primase large subunit PriB; Regulatory subunit of DNA primase, an RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. Stabilizes and modulates the activity of the small subunit, increasing the rate of DNA synthesis, and conferring RNA synthesis capability. The DNA polymerase activity may enable DNA primase to also catalyze primer extension after primer synthesis. May also play a role in DNA repair. (452 aa) |
| | priA | DNA primase small subunit PriA; Catalytic subunit of DNA primase, an RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. The small subunit contains the primase catalytic core and has DNA synthesis activity on its own. Binding to the large subunit stabilizes and modulates the activity, increasing the rate of DNA synthesis while decreasing the length of the DNA fragments, and conferring RNA synthesis capability. The DNA polymerase activity may enable DNA primase to also catalyze primer extension after primer synthe [...] (334 aa) |
| | npdG1 | NADPH-dependent F420 reductase NpdG1. (227 aa) |
| | hisD | Histidinol dehydrogenase HisD; Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine. (427 aa) |
| | Abm4_0702 | Adhesin-like protein with transglutaminase and PMBR domains. (1324 aa) |
| | endA | tRNA intron endonuclease EndA. (171 aa) |
| | Abm4_0708 | Archaeal histone. (67 aa) |
| | rps28e | Ribosomal protein S28e Rps28e; Belongs to the eukaryotic ribosomal protein eS28 family. (68 aa) |
| | rpl24e | Ribosomal protein L24e Rpl24e; Binds to the 23S rRNA. (53 aa) |
| | rps6e | Ribosomal protein S6e Rps6e; Belongs to the eukaryotic ribosomal protein eS6 family. (126 aa) |
| | rps24e | Ribosomal protein S24e Rps24e; Belongs to the eukaryotic ribosomal protein eS24 family. (103 aa) |
| | Abm4_0728 | Geranylgeranyl reductase family protein; Is involved in the reduction of 2,3- digeranylgeranylglycerophospholipids (unsaturated archaeols) into 2,3- diphytanylglycerophospholipids (saturated archaeols) in the biosynthesis of archaeal membrane lipids. Catalyzes the formation of archaetidic acid (2,3-di-O-phytanyl-sn-glyceryl phosphate) from 2,3-di- O-geranylgeranylglyceryl phosphate (DGGGP) via the hydrogenation of each double bond of the isoprenoid chains. (399 aa) |
| | Abm4_0733 | 4Fe-4S iron sulfur cluster binding protein NifH/frxC family; Belongs to the NifH/BchL/ChlL family. (267 aa) |
| | pyrF | Orotidine 5'-phosphate decarboxylase PyrF; Catalyzes the decarboxylation of orotidine 5'-monophosphate (OMP) to uridine 5'-monophosphate (UMP); Belongs to the OMP decarboxylase family. Type 1 subfamily. (213 aa) |
| | ubiX | 3-polyprenyl-4-hydroxybenzoate decarboxylase UbiX; Flavin prenyltransferase that catalyzes the synthesis of the prenylated FMN cofactor (prenyl-FMN) for 4-hydroxy-3-polyprenylbenzoic acid decarboxylase UbiD. The prenyltransferase is metal-independent and links a dimethylallyl moiety from dimethylallyl monophosphate (DMAP) to the flavin N5 and C6 atoms of FMN; Belongs to the UbiX/PAD1 family. (183 aa) |
| | Abm4_0767 | HD domain-containing protein. (411 aa) |
| | rfcS | Replication factor C small subunit RfcS; Part of the RFC clamp loader complex which loads the PCNA sliding clamp onto DNA; Belongs to the activator 1 small subunits family. RfcS subfamily. (315 aa) |
| | rfcL | Replication factor C large subunit RfcL; Part of the RFC clamp loader complex which loads the PCNA sliding clamp onto DNA; Belongs to the activator 1 small subunits family. RfcL subfamily. (552 aa) |
| | Abm4_0797 | RNA-binding protein. (159 aa) |
| | Abm4_0804 | O-acetylhomoserine/O-acetylserine sulfhydrylase. (429 aa) |
| | Abm4_0846 | Archaeal ATPase. (388 aa) |
| | Abm4_0848 | Archaeal histone. (67 aa) |
| | rad50 | DNA double-strand break repair protein Rad50; Part of the Rad50/Mre11 complex, which is involved in the early steps of DNA double-strand break (DSB) repair. The complex may facilitate opening of the processed DNA ends to aid in the recruitment of HerA and NurA. Rad50 controls the balance between DNA end bridging and DNA resection via ATP-dependent structural rearrangements of the Rad50/Mre11 complex; Belongs to the SMC family. RAD50 subfamily. (925 aa) |
| | mre11 | DNA double-strand break repair protein Mre11; Part of the Rad50/Mre11 complex, which is involved in the early steps of DNA double-strand break (DSB) repair. The complex may facilitate opening of the processed DNA ends to aid in the recruitment of HerA and NurA. Mre11 binds to DSB ends and has both double-stranded 3'-5' exonuclease activity and single-stranded endonuclease activity. Belongs to the MRE11/RAD32 family. (380 aa) |
| | rpl40e | Ribosomal protein L40e Rpl40e; Belongs to the eukaryotic ribosomal protein eL40 family. (48 aa) |
| | hmgA | hydroxymethylglutaryl-CoA reductase (NADPH) HmgA; Belongs to the HMG-CoA reductase family. (401 aa) |
| | pdxS | Pyridoxal biosynthesis lyase PdxS; Catalyzes the formation of pyridoxal 5'-phosphate from ribose 5-phosphate (RBP), glyceraldehyde 3-phosphate (G3P) and ammonia. The ammonia is provided by the PdxT subunit. Can also use ribulose 5- phosphate and dihydroxyacetone phosphate as substrates, resulting from enzyme-catalyzed isomerization of RBP and G3P, respectively. Belongs to the PdxS/SNZ family. (293 aa) |
| | Abm4_0915 | Ribosomal biogenesis protein; Probably involved in the biogenesis of the ribosome. (171 aa) |
| | rpl37ae | Ribosomal protein L37Ae Rpl37ae; Binds to the 23S rRNA. (87 aa) |
| | Abm4_0921 | Exosome subunit. (233 aa) |
| | Abm4_0926 | Ribosomal protein L15e Rpl15e. (184 aa) |
| | cimA | Citramalate synthase CimA; Belongs to the alpha-IPM synthase/homocitrate synthase family. (496 aa) |
| | Abm4_0971 | Geranylgeranyl reductase family protein. (399 aa) |
| | Abm4_0977 | HTH domain-containing protein. (163 aa) |
| | gltA | Glutamate synthase alpha subunit GltA; Belongs to the glutamate synthase family. (497 aa) |
| | Abm4_1000 | AMP-binding enzyme. (414 aa) |
| | argB | Acetylglutamate kinase ArgB; Catalyzes the ATP-dependent phosphorylation of N-acetyl-L- glutamate; Belongs to the acetylglutamate kinase family. ArgB subfamily. (293 aa) |
| | Abm4_1004 | Archaeal ATPase. (400 aa) |
| | Abm4_1005 | Na+/H+ antiporter. (357 aa) |
| | argJ | Bifunctional ornithine acetyltransferase/N-acetylglutamate synthase protein ArgJ; Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis: the synthesis of N-acetylglutamate from glutamate and acetyl-CoA as the acetyl donor, and of ornithine by transacetylation between N(2)-acetylornithine and glutamate. Belongs to the ArgJ family. (418 aa) |
| | Abm4_1031 | Helicase. (973 aa) |
| | Abm4_1139 | DEAD/DEAH box helicase domain-containing protein; Belongs to the DEAD box helicase family. (432 aa) |
| | Abm4_1146 | CobN/magnesium chelatase family protein. (1609 aa) |
| | rps8e | Ribosomal protein S8e Rps8e. (125 aa) |
| | polB2 | DNA polymerase family B PolB2. (236 aa) |
| | Abm4_1149 | Hydrolase HAD superfamily. (231 aa) |
| | Abm4_1169 | Geranylgeranyl reductase family protein; Is involved in the reduction of 2,3- digeranylgeranylglycerophospholipids (unsaturated archaeols) into 2,3- diphytanylglycerophospholipids (saturated archaeols) in the biosynthesis of archaeal membrane lipids. Catalyzes the formation of archaetidic acid (2,3-di-O-phytanyl-sn-glyceryl phosphate) from 2,3-di- O-geranylgeranylglyceryl phosphate (DGGGP) via the hydrogenation of each double bond of the isoprenoid chains. (396 aa) |
| | Abm4_1182 | Metallo-beta-lactamase superfamily protein. (283 aa) |
| | Abm4_1183 | NifU-like FeS cluster assembly scaffold protein. (127 aa) |
| | Abm4_1185 | O-acetylhomoserine/O-acetylserine sulfhydrylase. (451 aa) |
| | nth | Endonuclease III Nth; DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N-glycosidic bond, leaving an AP (apurinic/apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'- phosphate. (215 aa) |
| | Abm4_1202 | Hypothetical protein. (136 aa) |
| | nox | NADH oxidase Nox. (443 aa) |
| | fni | Isopentenyl diphosphate delta-isomerase Fni; Involved in the biosynthesis of isoprenoids. Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its allylic isomer, dimethylallyl diphosphate (DMAPP). (353 aa) |
| | rps2p | Ribosomal protein S2P Rps2p; Belongs to the universal ribosomal protein uS2 family. (200 aa) |
| | rps9p | Ribosomal protein S9P Rps9p; Belongs to the universal ribosomal protein uS9 family. (132 aa) |
| | rpl18e | Ribosomal protein L18e Rpl18e; Belongs to the eukaryotic ribosomal protein eL18 family. (121 aa) |
| | rps4p | Ribosomal protein S4P Rps4p; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. (180 aa) |
| | rps13 | Ribosomal protein S13P Rps13p; Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits; these bridges are implicated in subunit movement; Belongs to the universal ribosomal protein uS13 family. (153 aa) |
| | cbf5p | H/ACA RNA-protein complex component Cbf5p; Could be responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs; Belongs to the pseudouridine synthase TruB family. Type 2 subfamily. (320 aa) |
| | Abm4_1248 | Ribosomal protein L14e Rpl14e. (73 aa) |
| | rpl34e | Ribosomal protein L34e Rpl34e; Belongs to the eukaryotic ribosomal protein eL34 family. (88 aa) |
| | rps5p | Ribosomal protein S5P Rps5p; With S4 and S12 plays an important role in translational accuracy. (214 aa) |
| | rpl18 | Ribosomal protein L18P Rpl18p; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. (193 aa) |
| | rpl19e | Ribosomal protein L19e Rpl19e; Binds to the 23S rRNA; Belongs to the eukaryotic ribosomal protein eL19 family. (149 aa) |
| | Abm4_1259 | Ribosomal protein L32e Rpl32e. (108 aa) |
| | rpl6p | Ribosomal protein L6P Rpl6p; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family. (178 aa) |
| | rps8p | Ribosomal protein S8P Rps8p; One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; Belongs to the universal ribosomal protein uS8 family. (130 aa) |
| | rps14 | Ribosomal protein S14P Rps14p; Binds 16S rRNA, required for the assembly of 30S particles. (47 aa) |
| | rpl5p | Ribosomal protein L5P Rpl5p; This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. May contact the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs. (171 aa) |
| | rps4e | Ribosomal protein S4e Rps4e; Belongs to the eukaryotic ribosomal protein eS4 family. (241 aa) |
| | rpl24 | Ribosomal protein L24P Rpl24p; Located at the polypeptide exit tunnel on the outside of the subunit. (116 aa) |
| | rpl14 | Ribosomal protein L14P Rpl14p; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family. (132 aa) |
| | rps17 | Ribosomal protein S17P Rps17p; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA. (105 aa) |
| | rpl29 | Ribosomal protein L29P Rpl29p; Belongs to the universal ribosomal protein uL29 family. (68 aa) |
| | rps3p | Ribosomal protein S3P Rps3p; Binds the lower part of the 30S subunit head. Belongs to the universal ribosomal protein uS3 family. (254 aa) |
| | rpl22 | Ribosomal protein L22P Rpl22p; The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome. (154 aa) |
| | rps19p | Ribosomal protein S19P Rps19p; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA. (136 aa) |
| | rpl23 | Ribosomal protein L23P Rpl23p; Binds to 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Belongs to the universal ribosomal protein uL23 family. (86 aa) |
| | rpl3p | Ribosomal protein L3P Rpl3p; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. (336 aa) |
| | Abm4_1278 | Hypothetical protein. (272 aa) |
| | Abm4_1296 | Transporter CDF family. (304 aa) |
| | Abm4_1297 | Iron-containing alcohol dehydrogenase. (398 aa) |
| | Abm4_1316 | Met-10+ like-protein. (361 aa) |
| | Abm4_1329 | PRC-barrel domain-containing protein. (78 aa) |
| | Abm4_1355 | Macro domain-containing protein. (262 aa) |
| | Abm4_1363 | ZPR1 zinc-finger domain-containing protein. (194 aa) |
| | rnz | Ribonuclease Z Rnz; Zinc phosphodiesterase, which displays some tRNA 3'- processing endonuclease activity. Probably involved in tRNA maturation, by removing a 3'-trailer from precursor tRNA; Belongs to the RNase Z family. (297 aa) |
| | Abm4_1380 | Hydrolase alpha/beta fold family. (322 aa) |
| | Abm4_1392 | NMD3 family protein. (352 aa) |
| | ubiB | 2-polyprenylphenol 6-hydroxylase UbiB. (546 aa) |
| | Abm4_1426 | ATPase. (282 aa) |
| | Abm4_1451 | Metallophosphoesterase. (346 aa) |
| | top6A | DNA topoisomerase VI subunit A; Relaxes both positive and negative superturns and exhibits a strong decatenase activity; Belongs to the TOP6A family. (371 aa) |
| | Abm4_1479 | Endonuclease IV. (277 aa) |
| | hemA | glutamyl-tRNA reductase HemA; Catalyzes the NADPH-dependent reduction of glutamyl-tRNA(Glu) to glutamate 1-semialdehyde (GSA). (412 aa) |
| | Abm4_1503 | Ribosomal protein L10e Rpl10e. (160 aa) |
| | sufBD | FeS assembly protein SufBD. (418 aa) |
| | Abm4_1515 | PRC-barrel domain-containing protein. (89 aa) |
| | Abm4_1532 | Metallophosphoesterase. (383 aa) |
| | Abm4_1536 | TraB family protein. (390 aa) |
| | taw2 | Met-10+ like-protein; S-adenosyl-L-methionine-dependent transferase that acts as a component of the wyosine derivatives biosynthesis pathway. Catalyzes the transfer of the alpha-amino-alpha-carboxypropyl (acp) group from S- adenosyl-L-methionine to 4-demethylwyosine (imG-14), forming 7- aminocarboxypropyl-demethylwyosine (wybutosine-86) at position 37 of tRNA(Phe). (251 aa) |
| | Abm4_1553 | Cupin domain-containing protein. (109 aa) |
| | hcp | Hydroxylamine reductase Hcp; Catalyzes the reduction of hydroxylamine to form NH(3) and H(2)O. (439 aa) |
| | polB1 | DNA polymerase family B PolB1. (615 aa) |
| | pyrK | Dihydroorotate dehydrogenase electron transfer subunit PyrK. (265 aa) |
| | Abm4_1560 | pre-mRNA splicing ribonucleoprotein PRP31. (405 aa) |
| | flpA | Fibrillarin FlpA; Involved in pre-rRNA and tRNA processing. Utilizes the methyl donor S-adenosyl-L-methionine to catalyze the site-specific 2'-hydroxyl methylation of ribose moieties in rRNA and tRNA. Site specificity is provided by a guide RNA that base pairs with the substrate. Methylation occurs at a characteristic distance from the sequence involved in base pairing with the guide RNA; Belongs to the methyltransferase superfamily. Fibrillarin family. (216 aa) |
| | pheA | Prephenate dehydratase PheA. (234 aa) |
| | cobB | NAD-dependent protein deacetylase; NAD-dependent protein deacetylase which modulates the activities of several enzymes which are inactive in their acetylated form. Deacetylates the N-terminal lysine residue of Alba, the major archaeal chromatin protein and that, in turn, increases Alba's DNA binding affinity, thereby repressing transcription; Belongs to the sirtuin family. Class U subfamily. (245 aa) |
| | Abm4_1608 | Radical SAM domain-containing protein. (333 aa) |
| | grpE | Molecular chaperone GrpE; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP [...] (184 aa) |
| | dnaK | Molecular chaperone DnaK; Acts as a chaperone. (632 aa) |
| | npdG2 | NADPH-dependent F420 reductase NpdG2. (224 aa) |
| | Abm4_1629 | Iron-containing alcohol dehydrogenase. (393 aa) |
| | nop10 | H/ACA RNA-protein complex component Nop10p; Involved in ribosome biogenesis; more specifically in 18S rRNA pseudouridylation and in cleavage of pre-rRNA. (53 aa) |
| | rpl44e | Ribosomal protein L44e Rpl44e; Binds to the 23S rRNA. (92 aa) |
| | rpl21e | Ribosomal protein L21e Rpl21e; Belongs to the eukaryotic ribosomal protein eL21 family. (96 aa) |
| | ksgA | Dimethyladenosine transferase KsgA; Specifically dimethylates two adjacent adenosines in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits. Belongs to the class I-like SAM-binding methyltransferase superfamily. rRNA adenine N(6)-methyltransferase family. RsmA subfamily. (287 aa) |
| | lysA | Diaminopimelate decarboxylase LysA; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine. (427 aa) |
| | argD | Acetylornithine aminotransferase ArgD; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. ArgD subfamily. (390 aa) |
| | Abm4_1676 | ATP-dependent DNA helicase. (621 aa) |
| | glyA | Serine hydroxymethyltransferase GlyA; Catalyzes the reversible interconversion of serine and glycine with tetrahydromethanopterin (H4MPT) serving as the one-carbon carrier. Also exhibits a pteridine-independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro- aldol mechanism; Belongs to the SHMT family. (422 aa) |
| | Abm4_1692 | Transporter. (300 aa) |
| | radA | DNA repair and recombination protein RadA; Involved in DNA repair and in homologous recombination. Binds and assemble on single-stranded DNA to form a nucleoprotein filament. Hydrolyzes ATP in a ssDNA-dependent manner and promotes DNA strand exchange between homologous DNA molecules. (311 aa) |
| | rpaI | Replication factor A RpaI. (789 aa) |
| | Abm4_1726 | Hypothetical protein. (132 aa) |
