12 items (Methanobrevibacter sp. AbM4) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Abm4_1291	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein. (328 aa)
	fwdF	Tungsten formylmethanofuran dehydrogenase subunit F FwdF. (367 aa)
	Abm4_0376	Nitrite and sulphite reductase 4Fe-4S region. (690 aa)
	Abm4_0631	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein. (255 aa)
	Abm4_0727	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein. (54 aa)
	Abm4_0934	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein. (283 aa)
	ehaQ	Energy-converting hydrogenase A subunit Q EhaQ. (523 aa)
	ehaP	Energy-converting hydrogenase A subunit P EhaP. (351 aa)
	porE	Pyruvate ferredoxin oxidoreductase-associated PorE. (164 aa)
	ehbK	Energy-converting hydrogenase B subunit K EhbK. (469 aa)
	mvhB	Methyl viologen-reducing hydrogenase beta subunit MvhB. (415 aa)
	ehbL	Energy-converting hydrogenase B subunit L EhbL. (167 aa)

Your Current Organism:

Methanobrevibacter sp. AbM4

NCBI taxonomy Id: 224719
Other names: M. sp. AbM4

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Abm4_0376	mvhB	Abm4_0376	Abm4_1509	Nitrite and sulphite reductase 4Fe-4S region.	Methyl viologen-reducing hydrogenase beta subunit MvhB.	0.401
Abm4_0934	ehaP	Abm4_0934	Abm4_0939	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein.	Energy-converting hydrogenase A subunit P EhaP.	0.760
Abm4_0934	ehaQ	Abm4_0934	Abm4_0938	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein.	Energy-converting hydrogenase A subunit Q EhaQ.	0.756
Abm4_1291	fwdF	Abm4_1291	Abm4_0138	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein.	Tungsten formylmethanofuran dehydrogenase subunit F FwdF.	0.906
Abm4_1291	porE	Abm4_1291	Abm4_1436	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein.	Pyruvate ferredoxin oxidoreductase-associated PorE.	0.900
ehaP	Abm4_0934	Abm4_0939	Abm4_0934	Energy-converting hydrogenase A subunit P EhaP.	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein.	0.760
ehaP	ehaQ	Abm4_0939	Abm4_0938	Energy-converting hydrogenase A subunit P EhaP.	Energy-converting hydrogenase A subunit Q EhaQ.	0.827
ehaP	ehbL	Abm4_0939	Abm4_1579	Energy-converting hydrogenase A subunit P EhaP.	Energy-converting hydrogenase B subunit L EhbL.	0.441
ehaQ	Abm4_0934	Abm4_0938	Abm4_0934	Energy-converting hydrogenase A subunit Q EhaQ.	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein.	0.756
ehaQ	ehaP	Abm4_0938	Abm4_0939	Energy-converting hydrogenase A subunit Q EhaQ.	Energy-converting hydrogenase A subunit P EhaP.	0.827
ehbK	ehbL	Abm4_1580	Abm4_1579	Energy-converting hydrogenase B subunit K EhbK.	Energy-converting hydrogenase B subunit L EhbL.	0.993
ehbL	ehaP	Abm4_1579	Abm4_0939	Energy-converting hydrogenase B subunit L EhbL.	Energy-converting hydrogenase A subunit P EhaP.	0.441
ehbL	ehbK	Abm4_1579	Abm4_1580	Energy-converting hydrogenase B subunit L EhbL.	Energy-converting hydrogenase B subunit K EhbK.	0.993
ehbL	porE	Abm4_1579	Abm4_1436	Energy-converting hydrogenase B subunit L EhbL.	Pyruvate ferredoxin oxidoreductase-associated PorE.	0.780
fwdF	Abm4_1291	Abm4_0138	Abm4_1291	Tungsten formylmethanofuran dehydrogenase subunit F FwdF.	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein.	0.906
fwdF	porE	Abm4_0138	Abm4_1436	Tungsten formylmethanofuran dehydrogenase subunit F FwdF.	Pyruvate ferredoxin oxidoreductase-associated PorE.	0.900
mvhB	Abm4_0376	Abm4_1509	Abm4_0376	Methyl viologen-reducing hydrogenase beta subunit MvhB.	Nitrite and sulphite reductase 4Fe-4S region.	0.401
porE	Abm4_1291	Abm4_1436	Abm4_1291	Pyruvate ferredoxin oxidoreductase-associated PorE.	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein.	0.900
porE	ehbL	Abm4_1436	Abm4_1579	Pyruvate ferredoxin oxidoreductase-associated PorE.	Energy-converting hydrogenase B subunit L EhbL.	0.780
porE	fwdF	Abm4_1436	Abm4_0138	Pyruvate ferredoxin oxidoreductase-associated PorE.	Tungsten formylmethanofuran dehydrogenase subunit F FwdF.	0.900