5 items (Bradyrhizobium diazoefficiens) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AND89287.1	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (265 aa)
	AND89288.1	Amino acid ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (242 aa)
	AND89289.1	Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (216 aa)
	AND89290.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (219 aa)
	dsd	Amino acid deaminase; Derived by automated computational analysis using gene prediction method: Protein Homology. (431 aa)

Your Current Organism:

Bradyrhizobium diazoefficiens

NCBI taxonomy Id: 224911
Other names: B. diazoefficiens USDA 110, Bradyrhizobium diazoefficiens USDA 110, Bradyrhizobium japonicum USDA 110

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AND89287.1	AND89288.1	AAV28_16905	AAV28_16910	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Amino acid ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.940
AND89287.1	AND89289.1	AAV28_16905	AAV28_16915	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.944
AND89287.1	AND89290.1	AAV28_16905	AAV28_16920	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.942
AND89287.1	dsd	AAV28_16905	AAV28_16925	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Amino acid deaminase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.715
AND89288.1	AND89287.1	AAV28_16910	AAV28_16905	Amino acid ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.940
AND89288.1	AND89289.1	AAV28_16910	AAV28_16915	Amino acid ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.997
AND89288.1	AND89290.1	AAV28_16910	AAV28_16920	Amino acid ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.997
AND89288.1	dsd	AAV28_16910	AAV28_16925	Amino acid ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Amino acid deaminase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.775
AND89289.1	AND89287.1	AAV28_16915	AAV28_16905	Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.944
AND89289.1	AND89288.1	AAV28_16915	AAV28_16910	Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Amino acid ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.997
AND89289.1	AND89290.1	AAV28_16915	AAV28_16920	Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.982
AND89289.1	dsd	AAV28_16915	AAV28_16925	Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Amino acid deaminase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.775
AND89290.1	AND89287.1	AAV28_16920	AAV28_16905	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.942
AND89290.1	AND89288.1	AAV28_16920	AAV28_16910	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Amino acid ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.997
AND89290.1	AND89289.1	AAV28_16920	AAV28_16915	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.982
AND89290.1	dsd	AAV28_16920	AAV28_16925	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Amino acid deaminase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.784
dsd	AND89287.1	AAV28_16925	AAV28_16905	Amino acid deaminase; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.715
dsd	AND89288.1	AAV28_16925	AAV28_16910	Amino acid deaminase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Amino acid ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.775
dsd	AND89289.1	AAV28_16925	AAV28_16915	Amino acid deaminase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.775
dsd	AND89290.1	AAV28_16925	AAV28_16920	Amino acid deaminase; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.784