10 items (Bradyrhizobium diazoefficiens) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	tonB	Energy transducer TonB; Derived by automated computational analysis using gene prediction method: Protein Homology. (276 aa)
	exbD	Biopolymer transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (148 aa)
	exbB-2	Biopolymer transporter ExbB; Derived by automated computational analysis using gene prediction method: Protein Homology. (258 aa)
	AND94394.1	Coproporphyrinogen III oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (167 aa)
	AND92064.1	Antibiotic biosynthesis monooxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (110 aa)
	hmuR	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. (770 aa)
	AND92066.1	Hemin transporter HemP; Derived by automated computational analysis using gene prediction method: Protein Homology. (65 aa)
	hmuT	Hemin ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (317 aa)
	hmuU	Iron ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily. (363 aa)
	hmuV	Iron ABC transporter; Part of the ABC transporter complex HmuTUV involved in hemin import. Responsible for energy coupling to the transport system. (268 aa)

Your Current Organism:

Bradyrhizobium diazoefficiens

NCBI taxonomy Id: 224911
Other names: B. diazoefficiens USDA 110, Bradyrhizobium diazoefficiens USDA 110, Bradyrhizobium japonicum USDA 110

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AND92064.1	AND94394.1	AAV28_33015	AAV28_33010	Antibiotic biosynthesis monooxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Coproporphyrinogen III oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.829
AND92064.1	exbB-2	AAV28_33015	AAV28_33005	Antibiotic biosynthesis monooxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Biopolymer transporter ExbB; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.649
AND92064.1	exbD	AAV28_33015	AAV28_33000	Antibiotic biosynthesis monooxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Biopolymer transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.639
AND92064.1	hmuR	AAV28_33015	AAV28_33020	Antibiotic biosynthesis monooxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.758
AND92064.1	hmuT	AAV28_33015	AAV28_33030	Antibiotic biosynthesis monooxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hemin ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.647
AND92064.1	hmuU	AAV28_33015	AAV28_33035	Antibiotic biosynthesis monooxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Iron ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.	0.547
AND92064.1	hmuV	AAV28_33015	AAV28_33040	Antibiotic biosynthesis monooxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Iron ABC transporter; Part of the ABC transporter complex HmuTUV involved in hemin import. Responsible for energy coupling to the transport system.	0.518
AND92064.1	tonB	AAV28_33015	AAV28_32995	Antibiotic biosynthesis monooxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Energy transducer TonB; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.653
AND92066.1	exbB-2	AAV28_33025	AAV28_33005	Hemin transporter HemP; Derived by automated computational analysis using gene prediction method: Protein Homology.	Biopolymer transporter ExbB; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.415
AND92066.1	exbD	AAV28_33025	AAV28_33000	Hemin transporter HemP; Derived by automated computational analysis using gene prediction method: Protein Homology.	Biopolymer transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.467
AND92066.1	hmuR	AAV28_33025	AAV28_33020	Hemin transporter HemP; Derived by automated computational analysis using gene prediction method: Protein Homology.	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.604
AND92066.1	hmuT	AAV28_33025	AAV28_33030	Hemin transporter HemP; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hemin ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.809
AND92066.1	hmuU	AAV28_33025	AAV28_33035	Hemin transporter HemP; Derived by automated computational analysis using gene prediction method: Protein Homology.	Iron ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.	0.821
AND92066.1	hmuV	AAV28_33025	AAV28_33040	Hemin transporter HemP; Derived by automated computational analysis using gene prediction method: Protein Homology.	Iron ABC transporter; Part of the ABC transporter complex HmuTUV involved in hemin import. Responsible for energy coupling to the transport system.	0.808
AND94394.1	AND92064.1	AAV28_33010	AAV28_33015	Coproporphyrinogen III oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Antibiotic biosynthesis monooxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.829
AND94394.1	exbB-2	AAV28_33010	AAV28_33005	Coproporphyrinogen III oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Biopolymer transporter ExbB; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.748
AND94394.1	exbD	AAV28_33010	AAV28_33000	Coproporphyrinogen III oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Biopolymer transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.787
AND94394.1	hmuR	AAV28_33010	AAV28_33020	Coproporphyrinogen III oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.872
AND94394.1	hmuT	AAV28_33010	AAV28_33030	Coproporphyrinogen III oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hemin ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.588
AND94394.1	hmuU	AAV28_33010	AAV28_33035	Coproporphyrinogen III oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Iron ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.	0.610