47 items (Bradyrhizobium diazoefficiens) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AND86644.1	Aminoglycoside phosphotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (363 aa)
	AND87271.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (268 aa)
	AND87300.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (620 aa)
	AND87313.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (1716 aa)
	AND87324.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (1441 aa)
	AND93805.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (602 aa)
	AND87489.1	E3 ubiquitin--protein ligase; Derived by automated computational analysis using gene prediction method: Protein Homology. (585 aa)
	AND87545.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (518 aa)
	AND87546.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (212 aa)
	AND87547.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (1144 aa)
	AND87548.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (389 aa)
	noeI	Methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (215 aa)
	AND87627.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (936 aa)
	AND87882.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (243 aa)
	AND87883.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (1453 aa)
	AND88314.1	Exonuclease VII large subunit; Derived by automated computational analysis using gene prediction method: Protein Homology. (658 aa)
	AND88442.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (114 aa)
	AND88507.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (442 aa)
	AND88682.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (5685 aa)
	AND88683.1	Hemolysin activation/secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (561 aa)
	AND94035.1	Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (228 aa)
	AND89369.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (272 aa)
	AND90688.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (180 aa)
	AND90763.1	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (555 aa)
	AND90846.1	Calcium sensor EFh; Derived by automated computational analysis using gene prediction method: Protein Homology. (260 aa)
	AND90912.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (331 aa)
	AND91045.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (465 aa)
	AND91256.1	LexA repressor; Derived by automated computational analysis using gene prediction method: Protein Homology. (202 aa)
	AND91541.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (149 aa)
	AND91660.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (296 aa)
	AND91894.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (272 aa)
	AND92206.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (172 aa)
	AND94416.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (317 aa)
	AND92377.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (267 aa)
	AND94428.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (174 aa)
	metA	SAM-dependent methlyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (266 aa)
	AND94468.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (260 aa)
	AND92743.1	C4-dicarboxylate ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (481 aa)
	AND94488.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (2734 aa)
	AND94512.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (362 aa)
	AND92985.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (541 aa)
	AND93063.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (1441 aa)
	AND93198.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (462 aa)
	AND93217.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (283 aa)
	AND93455.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (368 aa)
	AND93480.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (387 aa)
	AND93660.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (292 aa)

Your Current Organism:

Bradyrhizobium diazoefficiens

NCBI taxonomy Id: 224911
Other names: B. diazoefficiens USDA 110, Bradyrhizobium diazoefficiens USDA 110, Bradyrhizobium japonicum USDA 110

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... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AND86644.1	AND87271.1	AAV28_01490	AAV28_05125	Aminoglycoside phosphotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.667
AND86644.1	AND87300.1	AAV28_01490	AAV28_05300	Aminoglycoside phosphotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.528
AND86644.1	AND87313.1	AAV28_01490	AAV28_05395	Aminoglycoside phosphotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.737
AND86644.1	AND87324.1	AAV28_01490	AAV28_05465	Aminoglycoside phosphotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.736
AND86644.1	AND87489.1	AAV28_01490	AAV28_06425	Aminoglycoside phosphotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	E3 ubiquitin--protein ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.476
AND86644.1	AND87545.1	AAV28_01490	AAV28_06795	Aminoglycoside phosphotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.534
AND86644.1	AND87547.1	AAV28_01490	AAV28_06805	Aminoglycoside phosphotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.476
AND86644.1	AND87548.1	AAV28_01490	AAV28_06810	Aminoglycoside phosphotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.683
AND86644.1	AND87627.1	AAV28_01490	AAV28_07265	Aminoglycoside phosphotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.623
AND86644.1	AND87882.1	AAV28_01490	AAV28_08765	Aminoglycoside phosphotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.574
AND86644.1	AND87883.1	AAV28_01490	AAV28_08770	Aminoglycoside phosphotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.635
AND86644.1	AND88507.1	AAV28_01490	AAV28_12325	Aminoglycoside phosphotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.646
AND86644.1	AND88682.1	AAV28_01490	AAV28_13295	Aminoglycoside phosphotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.669
AND86644.1	AND90912.1	AAV28_01490	AAV28_26280	Aminoglycoside phosphotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.432
AND86644.1	AND91045.1	AAV28_01490	AAV28_27020	Aminoglycoside phosphotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.465
AND86644.1	AND91256.1	AAV28_01490	AAV28_28210	Aminoglycoside phosphotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	LexA repressor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.483
AND86644.1	AND91660.1	AAV28_01490	AAV28_30710	Aminoglycoside phosphotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.522
AND86644.1	AND91894.1	AAV28_01490	AAV28_32050	Aminoglycoside phosphotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.445
AND86644.1	AND92206.1	AAV28_01490	AAV28_33810	Aminoglycoside phosphotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.609
AND86644.1	AND92377.1	AAV28_01490	AAV28_34770	Aminoglycoside phosphotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.525