10 items (Bradyrhizobium diazoefficiens) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AND87271.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (268 aa)
	AND87324.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (1441 aa)
	AND87627.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (936 aa)
	AND87882.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (243 aa)
	AND87883.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (1453 aa)
	AND94488.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (2734 aa)
	AND93063.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (1441 aa)
	AND93198.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (462 aa)
	AND93455.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (368 aa)
	AND93660.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (292 aa)

Your Current Organism:

Bradyrhizobium diazoefficiens

NCBI taxonomy Id: 224911
Other names: B. diazoefficiens USDA 110, Bradyrhizobium diazoefficiens USDA 110, Bradyrhizobium japonicum USDA 110

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AND87271.1	AND87324.1	AAV28_05125	AAV28_05465	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.772
AND87271.1	AND87627.1	AAV28_05125	AAV28_07265	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.759
AND87271.1	AND87882.1	AAV28_05125	AAV28_08765	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.735
AND87271.1	AND87883.1	AAV28_05125	AAV28_08770	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.776
AND87271.1	AND93063.1	AAV28_05125	AAV28_38910	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.772
AND87271.1	AND93198.1	AAV28_05125	AAV28_39670	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.778
AND87271.1	AND93455.1	AAV28_05125	AAV28_41115	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.770
AND87271.1	AND93660.1	AAV28_05125	AAV28_42305	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.731
AND87271.1	AND94488.1	AAV28_05125	AAV28_37340	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.806
AND87324.1	AND87271.1	AAV28_05465	AAV28_05125	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.772
AND87324.1	AND87627.1	AAV28_05465	AAV28_07265	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.772
AND87324.1	AND87882.1	AAV28_05465	AAV28_08765	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.763
AND87324.1	AND87883.1	AAV28_05465	AAV28_08770	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.771
AND87324.1	AND93198.1	AAV28_05465	AAV28_39670	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.770
AND87324.1	AND93455.1	AAV28_05465	AAV28_41115	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.774
AND87324.1	AND93660.1	AAV28_05465	AAV28_42305	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.768
AND87324.1	AND94488.1	AAV28_05465	AAV28_37340	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.773
AND87627.1	AND87271.1	AAV28_07265	AAV28_05125	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.759
AND87627.1	AND87324.1	AAV28_07265	AAV28_05465	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.772
AND87627.1	AND87882.1	AAV28_07265	AAV28_08765	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.724