22 items (Bradyrhizobium diazoefficiens) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AND86687.1	Sortase; Derived by automated computational analysis using gene prediction method: Protein Homology. (189 aa)
	AND86688.1	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (754 aa)
	AND93714.1	XRE family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (253 aa)
	AND87833.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (224 aa)
	AND87835.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (88 aa)
	AND87836.1	Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (174 aa)
	AND93858.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (146 aa)
	AND87923.1	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (443 aa)
	AND89310.1	TetR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (194 aa)
	AND89311.1	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (195 aa)
	AND89744.1	Phage-shock protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (387 aa)
	AND89745.1	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (219 aa)
	AND89746.1	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (564 aa)
	AND89747.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (122 aa)
	AND92380.1	Antibiotic biosynthesis monooxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (107 aa)
	AND94422.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (405 aa)
	AND94423.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (520 aa)
	AND92381.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (69 aa)
	AND92547.1	YiaAB two helix domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (91 aa)
	AND92548.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (231 aa)
	AND94444.1	Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (181 aa)
	AND93016.1	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (194 aa)

Your Current Organism:

Bradyrhizobium diazoefficiens

NCBI taxonomy Id: 224911
Other names: B. diazoefficiens USDA 110, Bradyrhizobium diazoefficiens USDA 110, Bradyrhizobium japonicum USDA 110

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AND86687.1	AND86688.1	AAV28_01725	AAV28_01730	Sortase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.898
AND86687.1	AND92548.1	AAV28_01725	AAV28_35755	Sortase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.460
AND86688.1	AND86687.1	AAV28_01730	AAV28_01725	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sortase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.898
AND86688.1	AND92547.1	AAV28_01730	AAV28_35750	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	YiaAB two helix domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.541
AND86688.1	AND92548.1	AAV28_01730	AAV28_35755	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.488
AND86688.1	AND93714.1	AAV28_01730	AAV28_01735	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	XRE family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.562
AND87835.1	AND87836.1	AAV28_08510	AAV28_08515	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.535
AND87836.1	AND87835.1	AAV28_08515	AAV28_08510	Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.535
AND87836.1	AND92548.1	AAV28_08515	AAV28_35755	Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.712
AND87923.1	AND93858.1	AAV28_09010	AAV28_09005	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.563
AND89310.1	AND89311.1	AAV28_17050	AAV28_17055	TetR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.698
AND89311.1	AND89310.1	AAV28_17055	AAV28_17050	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	TetR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.698
AND89311.1	AND89744.1	AAV28_17055	AAV28_19495	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phage-shock protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.705
AND89311.1	AND89745.1	AAV28_17055	AAV28_19500	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.568
AND89311.1	AND92547.1	AAV28_17055	AAV28_35750	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	YiaAB two helix domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.401
AND89311.1	AND92548.1	AAV28_17055	AAV28_35755	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.417
AND89744.1	AND89311.1	AAV28_19495	AAV28_17055	Phage-shock protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.705
AND89744.1	AND89745.1	AAV28_19495	AAV28_19500	Phage-shock protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.972
AND89744.1	AND89746.1	AAV28_19495	AAV28_19505	Phage-shock protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.952
AND89744.1	AND92547.1	AAV28_19495	AAV28_35750	Phage-shock protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	YiaAB two helix domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.433