(48 nodes) HotDog domain superfamily network (Bradyrhizobium diazoefficiens)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AND93740.1	Phenylacetic acid degradation protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (169 aa)
	AND86450.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (265 aa)
	fabA	3-hydroxydecanoyl-ACP dehydratase; Necessary for the introduction of cis unsaturation into fatty acids. Catalyzes the dehydration of (3R)-3-hydroxydecanoyl-ACP to E- (2)-decenoyl-ACP and then its isomerization to Z-(3)-decenoyl-ACP. Can catalyze the dehydratase reaction for beta-hydroxyacyl-ACPs with saturated chain lengths up to 16:0, being most active on intermediate chain length. (173 aa)
	AND93752.1	Thioesterase; Derived by automated computational analysis using gene prediction method: Protein Homology. (141 aa)
	AND86998.1	acyl-CoA thioesterase; Derived by automated computational analysis using gene prediction method: Protein Homology. (257 aa)
	AND87014.1	Thioesterase; Derived by automated computational analysis using gene prediction method: Protein Homology. (142 aa)
	AND87015.1	Thioesterase; Derived by automated computational analysis using gene prediction method: Protein Homology. (158 aa)
	AND87932.1	acyl-CoA hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (143 aa)
	AND87997.1	Phenylacetic acid degradation protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (139 aa)
	AND93894.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (317 aa)
	paaI	Phenylacetic acid degradation protein PaaD; Derived by automated computational analysis using gene prediction method: Protein Homology. (149 aa)
	AND88721.1	Monoamine oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (162 aa)
	AND88728.1	Acyl dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology. (135 aa)
	AND88729.1	Acyl dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology. (143 aa)
	AND88817.1	4-hydroxybenzoyl-CoA thioesterase; Derived by automated computational analysis using gene prediction method: Protein Homology. (145 aa)
	nodN	Dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology. (152 aa)
	AND89131.1	3-hydroxyacyl-ACP dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology. (156 aa)
	AND89181.1	Dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology. (148 aa)
	AND89262.1	Phenylacetic acid degradation protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (177 aa)
	nodN-2	Nodulation protein NodN; Derived by automated computational analysis using gene prediction method: Protein Homology. (159 aa)
	AND89378.1	Phenylacetic acid degradation protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (155 aa)
	AND89456.1	Phenylacetic acid degradation protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (133 aa)
	fabA-2	3-hydroxydecanoyl-ACP dehydratase; Necessary for the introduction of cis unsaturation into fatty acids. Catalyzes the dehydration of (3R)-3-hydroxydecanoyl-ACP to E- (2)-decenoyl-ACP and then its isomerization to Z-(3)-decenoyl-ACP. Can catalyze the dehydratase reaction for beta-hydroxyacyl-ACPs with saturated chain lengths up to 16:0, being most active on intermediate chain length. (176 aa)
	fabZ	3-hydroxyacyl-ACP dehydratase; Involved in unsaturated fatty acids biosynthesis. Catalyzes the dehydration of short chain beta-hydroxyacyl-ACPs and long chain saturated and unsaturated beta-hydroxyacyl-ACPs. (153 aa)
	AND90193.1	Phenylacetic acid degradation protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (142 aa)
	AND90521.1	3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase; Derived by automated computational analysis using gene prediction method: Protein Homology. (286 aa)
	AND90753.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (139 aa)
	AND90883.1	Thioesterase; Derived by automated computational analysis using gene prediction method: Protein Homology. (159 aa)
	AND90903.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (250 aa)
	AND94234.1	Thioesterase; Derived by automated computational analysis using gene prediction method: Protein Homology. (154 aa)
	AND91034.1	Thioesterase; Derived by automated computational analysis using gene prediction method: Protein Homology. (155 aa)
	AND91451.1	3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase; Derived by automated computational analysis using gene prediction method: Protein Homology. (291 aa)
	AND91467.1	Acyl dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology. (156 aa)
	AND91603.1	Thioesterase; Derived by automated computational analysis using gene prediction method: Protein Homology. (168 aa)
	AND91812.1	Dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology. (150 aa)
	AND92189.1	acyl-CoA thioester hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (153 aa)
	AND92190.1	4-hydroxybenzoyl-CoA thioesterase; Derived by automated computational analysis using gene prediction method: Protein Homology. (132 aa)
	AND92220.1	Metal-binding domain containing of MaoC dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology. (283 aa)
	AND92255.1	Phenylacetic acid degradation protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (307 aa)
	AND92393.1	Dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology. (159 aa)
	AND92394.1	enoyl-CoA hydratase; Derived by automated computational analysis using gene prediction method: Protein Homology. (150 aa)
	AND92409.1	Thioesterase; Derived by automated computational analysis using gene prediction method: Protein Homology. (134 aa)
	AND92727.1	Thioesterase; Derived by automated computational analysis using gene prediction method: Protein Homology. (139 aa)
	AND92737.1	4-hydroxybenzoyl-CoA thioesterase; Derived by automated computational analysis using gene prediction method: Protein Homology. (139 aa)
	AND92976.1	acyl-CoA thioesterase; Derived by automated computational analysis using gene prediction method: Protein Homology. (271 aa)
	AND93369.1	Thioesterase; Derived by automated computational analysis using gene prediction method: Protein Homology. (138 aa)
	AND94574.1	Dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology. (159 aa)
	tesB	acyl-CoA thioesterase; Derived by automated computational analysis using gene prediction method: Protein Homology. (287 aa)

Your Current Organism:

Bradyrhizobium diazoefficiens

NCBI taxonomy Id: 224911
Other names: B. diazoefficiens USDA 110, Bradyrhizobium diazoefficiens USDA 110, Bradyrhizobium japonicum USDA 110

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AND86450.1	AND91812.1	AAV28_00405	AAV28_31580	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.429
AND86450.1	AND92976.1	AAV28_00405	AAV28_38395	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	acyl-CoA thioesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.608
AND86450.1	nodN	AAV28_00405	AAV28_14330	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.476
AND86450.1	nodN-2	AAV28_00405	AAV28_16810	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Nodulation protein NodN; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.414
AND86998.1	AND91812.1	AAV28_03535	AAV28_31580	acyl-CoA thioesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.438
AND86998.1	AND92976.1	AAV28_03535	AAV28_38395	acyl-CoA thioesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.	acyl-CoA thioesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.407
AND86998.1	nodN	AAV28_03535	AAV28_14330	acyl-CoA thioesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.469
AND86998.1	nodN-2	AAV28_03535	AAV28_16810	acyl-CoA thioesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Nodulation protein NodN; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.416
AND87014.1	AND87015.1	AAV28_03630	AAV28_03635	Thioesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Thioesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.848
AND87015.1	AND87014.1	AAV28_03635	AAV28_03630	Thioesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Thioesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.848
AND87015.1	AND89262.1	AAV28_03635	AAV28_16770	Thioesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phenylacetic acid degradation protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.400
AND87997.1	AND92727.1	AAV28_09425	AAV28_36885	Phenylacetic acid degradation protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Thioesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.426
AND87997.1	AND93740.1	AAV28_09425	AAV28_02915	Phenylacetic acid degradation protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phenylacetic acid degradation protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.713
AND88721.1	AND88728.1	AAV28_13515	AAV28_13555	Monoamine oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Acyl dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.774
AND88721.1	AND88729.1	AAV28_13515	AAV28_13560	Monoamine oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Acyl dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.858
AND88721.1	AND92393.1	AAV28_13515	AAV28_34870	Monoamine oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.719
AND88721.1	AND92394.1	AAV28_13515	AAV28_34875	Monoamine oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	enoyl-CoA hydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.716
AND88728.1	AND88721.1	AAV28_13555	AAV28_13515	Acyl dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Monoamine oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.774
AND88728.1	AND88729.1	AAV28_13555	AAV28_13560	Acyl dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Acyl dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.946
AND88729.1	AND88721.1	AAV28_13560	AAV28_13515	Acyl dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Monoamine oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.858