(3 nodes) Acyl transferase domain network (Bradyrhizobium diazoefficiens)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AND93357.1	ACP S-malonyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (312 aa)
	fabD	ACP S-malonyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (319 aa)
	mdcH	Malonyl CoA-ACP transacylase; Derived by automated computational analysis using gene prediction method: Protein Homology. (307 aa)

Your Current Organism:

Bradyrhizobium diazoefficiens

NCBI taxonomy Id: 224911
Other names: B. diazoefficiens USDA 110, Bradyrhizobium diazoefficiens USDA 110, Bradyrhizobium japonicum USDA 110

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AND93357.1	fabD	AAV28_40560	AAV28_17440	ACP S-malonyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	ACP S-malonyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.920
AND93357.1	mdcH	AAV28_40560	AAV28_03240	ACP S-malonyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Malonyl CoA-ACP transacylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.918
fabD	AND93357.1	AAV28_17440	AAV28_40560	ACP S-malonyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	ACP S-malonyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.920
fabD	mdcH	AAV28_17440	AAV28_03240	ACP S-malonyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Malonyl CoA-ACP transacylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.948
mdcH	AND93357.1	AAV28_03240	AAV28_40560	Malonyl CoA-ACP transacylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	ACP S-malonyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.918
mdcH	fabD	AAV28_03240	AAV28_17440	Malonyl CoA-ACP transacylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	ACP S-malonyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.948